genome.fa.s9.2.7.7.80.10.50.1000.137.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  137  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44196722--44196826	27	3.9	27	74	9	88	23	18	17	40	1.90
44196738--44196849	27	4.1	27	77	2	82	24	15	19	41	1.90
44204735--44204789	27	2.0	27	92	0	92	23	23	14	38	1.92
44220274--44220379	42	2.5	42	79	0	122	32	25	11	31	1.91
44227908--44227984	40	1.9	40	89	5	120	25	24	18	31	1.97
44230312--44230464	42	3.7	42	74	1	137	26	24	16	31	1.97
44238993--44239108	58	2.0	58	96	0	214	42	19	6	31	1.76
44242667--44242765	36	2.6	37	88	6	146	35	7	21	36	1.81
44255897--44255925	14	2.1	14	100	0	58	48	0	13	37	1.43
44258397--44258446	26	1.9	26	91	0	82	18	28	24	30	1.97
44261029--44261170	40	3.5	40	81	7	171	26	26	21	26	1.99
44271651--44271675	12	2.1	12	100	0	50	60	0	24	16	1.36
44276433--44276490	27	2.1	27	80	0	62	24	22	13	39	1.90
44276877--44277003	68	1.9	68	88	3	193	38	26	10	24	1.87
44277049--44277110	17	3.6	17	76	4	54	51	20	8	19	1.72
44282816--44283018	42	4.7	42	77	4	156	28	26	17	28	1.97
44282816--44282988	84	2.1	84	80	2	186	28	26	16	28	1.97
44307001--44308302	659	2.0	647	82	4	1562	32	13	19	35	1.90
44315173--44315425	40	6.4	40	91	3	322	24	28	23	22	1.99
44322290--44322387	28	3.5	28	87	2	126	31	27	13	27	1.94
44330562--44330659	27	3.5	28	87	4	126	31	28	13	26	1.94
44335080--44335376	40	7.5	40	89	2	370	25	27	23	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44338741--44338796	22	2.6	21	81	10	60	35	16	10	37	1.83
44339486--44339578	46	2.0	48	89	4	145	40	25	11	21	1.87
44341137--44341169	17	2.0	17	88	5	50	42	6	18	33	1.75
44342512--44342557	16	2.9	16	83	6	58	43	0	4	52	1.21
44345806--44345869	32	2.0	32	100	0	128	34	15	9	40	1.80
44349801--44349844	20	2.2	20	88	4	63	29	15	27	27	1.96
44349866--44349949	27	2.8	29	73	23	84	25	19	28	27	1.98
44349866--44350010	61	2.4	61	85	8	179	26	19	26	28	1.99
44354435--44354575	27	5.2	27	82	11	182	18	24	22	34	1.96
44354432--44354575	54	2.7	54	94	2	245	18	25	22	34	1.96
44358011--44358046	18	2.0	18	88	0	54	25	25	13	36	1.93
44362556--44362612	28	2.0	28	100	0	114	40	21	3	35	1.70
44362831--44363099	49	5.6	47	74	8	136	23	27	19	29	1.98
44362874--44363095	98	2.3	94	80	3	237	23	27	19	29	1.98
44362874--44363137	49	5.5	48	76	5	176	23	26	19	30	1.98
44362874--44363125	94	2.6	96	82	2	274	23	26	19	30	1.98
44371138--44371180	21	2.0	21	95	0	77	27	0	37	34	1.57
44371161--44371193	16	2.1	16	94	0	57	33	0	36	30	1.58
44371172--44371266	45	2.1	44	88	1	136	34	5	27	32	1.79
44371428--44371462	18	2.0	17	88	5	52	54	0	0	45	0.99
44371386--44371458	27	2.7	27	76	8	76	52	2	0	45	1.15
44371347--44371618	144	1.9	147	93	3	478	47	2	2	47	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44371550--44371736	44	4.3	44	67	19	113	51	4	1	42	1.31
44371572--44371606	18	2.0	18	88	5	54	54	0	0	45	0.99
44371555--44371788	129	1.8	130	94	0	416	49	5	2	42	1.38
44371701--44371735	18	2.0	17	88	5	52	60	0	0	40	0.97
44371776--44371822	17	2.9	16	78	18	53	46	2	6	44	1.40
44371795--44371828	17	2.0	17	94	0	59	50	0	5	44	1.26
44371861--44372054	92	2.1	91	88	5	284	46	4	4	44	1.41
44373395--44373446	12	4.4	12	90	4	88	67	15	0	17	1.24
44373441--44373467	11	2.5	11	100	0	54	51	18	7	22	1.70
44375648--44375678	15	2.1	15	100	0	62	45	0	19	35	1.51
44384993--44385058	26	2.5	26	73	9	62	28	13	24	33	1.93
44386931--44386984	27	2.0	27	82	7	65	57	7	0	35	1.27
44389747--44389787	15	3.1	14	83	16	52	63	0	0	36	0.95
44394221--44394356	44	3.2	41	82	9	139	33	25	15	25	1.95
44402227--44402394	44	3.7	46	82	7	155	23	29	19	27	1.98
44403111--44403135	12	2.1	12	100	0	50	60	16	8	16	1.58
44408118--44408163	22	2.1	22	92	8	76	41	34	6	17	1.75
44409735--44410052	47	6.8	45	77	12	252	25	28	18	27	1.98
44409735--44410051	141	2.2	140	81	6	345	24	28	18	27	1.98
44409735--44410052	94	3.4	91	77	11	311	25	28	18	27	1.98
44410769--44410793	12	2.1	12	100	0	50	60	16	8	16	1.58
44414930--44415015	43	2.0	43	82	13	106	24	18	29	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44418975--44419019	21	2.1	21	100	0	90	40	24	8	26	1.84
44424300--44424359	23	2.6	22	77	15	68	46	20	15	18	1.84
44428550--44428765	47	4.6	46	71	16	131	27	19	27	25	1.99
44436003--44436224	47	4.7	46	71	9	155	25	21	30	22	1.99
44440898--44441017	27	4.4	27	89	4	188	40	16	17	25	1.90
44441376--44441485	33	3.3	34	76	10	104	23	22	24	29	1.99
44447395--44447505	43	2.6	42	77	8	127	31	16	25	27	1.96
44471127--44471192	26	2.5	26	73	9	62	28	13	24	33	1.93
44475876--44475916	15	3.1	14	83	16	52	63	0	0	36	0.95
44551857--44551891	17	2.1	17	89	10	54	68	0	2	28	1.04
44562926--44562972	19	2.5	19	85	0	67	57	0	0	42	0.98
44563333--44563386	26	2.1	26	85	0	72	31	3	3	61	1.31
44565078--44565109	16	2.0	16	93	0	55	34	0	0	65	0.93
44568209--44568296	46	1.9	46	100	0	176	22	19	20	37	1.94
44569390--44569436	25	1.9	26	87	12	73	46	0	0	53	1.00
44572068--44572105	20	1.9	20	88	0	58	36	31	13	18	1.89
44578590--44578632	21	2.0	21	100	0	86	37	0	9	53	1.33
44602484--44602910	216	2.0	215	97	0	800	43	14	15	26	1.85
44606315--44606542	49	4.7	49	74	7	185	22	27	21	28	1.99
44606268--44606542	98	2.8	98	82	6	344	23	27	21	28	1.99
44606586--44606708	46	2.7	46	83	5	133	26	27	18	26	1.98
44614198--44614472	49	5.6	50	77	6	251	23	27	21	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44614242--44614472	98	2.4	98	86	2	347	22	27	22	28	1.99
44614532--44614642	46	2.4	46	90	0	168	23	29	17	29	1.97
44615009--44615049	22	1.9	22	90	5	66	19	21	43	14	1.87
44616140--44616361	46	4.8	47	74	13	176	22	29	19	27	1.98
44619879--44620127	45	5.4	45	78	8	218	35	14	19	30	1.92
44619879--44620085	89	2.3	89	81	5	233	36	14	19	29	1.91
44620031--44620127	51	1.9	51	91	0	158	36	14	18	30	1.91
44621839--44622054	27	7.7	28	65	21	96	24	10	3	62	1.41
44621796--44622028	113	2.1	114	96	0	432	24	9	3	62	1.42
44621984--44622073	31	3.0	31	64	23	84	23	6	4	65	1.35
44621844--44622073	58	4.0	58	79	9	283	24	9	3	62	1.42
44621984--44622073	27	3.2	27	69	27	87	23	6	4	65	1.35
44622092--44622118	4	6.8	4	100	0	54	25	0	0	74	0.83
44622149--44622197	18	2.7	18	90	0	71	18	4	2	75	1.06
44622149--44622207	21	2.8	21	81	2	64	18	3	1	76	1.02
44624140--44624207	29	2.4	28	74	13	68	41	0	0	58	0.98
44634956--44635406	44	10.2	45	68	11	182	35	22	21	21	1.96
44637386--44637427	15	2.8	15	81	0	57	30	4	2	61	1.29
44639303--44639350	15	3.3	14	80	8	60	37	0	10	52	1.36
44640065--44640095	16	1.9	16	93	0	53	29	0	9	61	1.28
44643115--44643327	106	2.0	106	85	5	288	38	11	16	32	1.85
44644841--44644886	24	1.9	24	82	8	58	17	8	8	65	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44645785--44645811	6	4.5	6	100	0	54	14	0	0	85	0.61
44646570--44646594	5	5.0	5	100	0	50	0	40	40	20	1.52
44650057--44650097	13	3.0	14	83	13	50	58	0	0	41	0.98
44650978--44651022	17	2.6	18	89	10	76	51	8	8	31	1.64
44651621--44651652	15	2.0	17	88	11	50	62	6	0	31	1.20
44652160--44652201	11	3.9	11	75	6	50	66	0	33	0	0.92
44653427--44654689	74	15.9	78	70	14	340	32	19	15	31	1.93
44653676--44654693	164	6.4	163	74	18	484	33	19	15	31	1.93
44653421--44654691	238	5.3	239	84	9	1409	33	19	15	31	1.93
44654078--44654687	73	7.9	73	78	15	482	32	19	15	31	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250