genome.fa.s9.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  128  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41303760--41303853	25	3.8	25	71	20	81	23	22	20	34	1.97
41303747--41303859	49	2.3	50	81	7	133	25	22	20	31	1.98
41306351--41306384	17	1.9	18	94	5	61	55	0	11	32	1.36
41307110--41307162	10	5.3	10	80	8	54	66	3	5	24	1.31
41322408--41322475	33	2.1	33	100	0	136	60	8	5	25	1.49
41323335--41323414	25	3.2	24	68	19	65	22	20	20	37	1.94
41326147--41326453	154	2.0	149	84	9	392	41	4	9	44	1.57
41326180--41326613	154	2.8	149	78	14	391	40	5	10	43	1.62
41326584--41326641	19	3.0	20	76	11	59	46	3	12	37	1.58
41328174--41328200	4	6.8	4	100	0	54	0	22	0	77	0.76
41332108--41332439	47	7.1	47	94	0	547	32	12	29	26	1.92
41332108--41332485	141	2.7	141	90	1	571	32	11	29	26	1.92
41339669--41339702	10	3.3	10	91	4	50	82	5	0	11	0.83
41341353--41341414	13	4.8	13	77	0	61	33	16	8	41	1.77
41341352--41341408	26	2.1	27	90	3	89	29	15	7	47	1.72
41342655--41342685	3	10.3	3	100	0	62	0	32	0	67	0.91
41367444--41367478	15	2.4	15	90	4	54	34	0	0	65	0.93
41367438--41367478	20	2.1	19	86	4	55	31	0	0	68	0.90
41374133--41374191	10	5.9	10	80	7	66	64	1	10	23	1.34
41374133--41374190	30	1.9	30	82	6	73	63	1	10	24	1.35
41380453--41380542	47	2.0	45	86	2	117	27	20	30	22	1.98
41382616--41383186	285	2.0	284	96	0	1061	36	12	26	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41389120--41389298	47	3.8	49	78	12	187	27	20	29	22	1.98
41392895--41393029	42	3.2	42	80	2	146	43	15	21	19	1.87
41392900--41392976	21	3.7	21	67	0	64	42	15	22	19	1.88
41393012--41393058	20	2.3	21	82	14	62	40	12	19	27	1.88
41400246--41400310	23	3.0	21	79	18	78	75	10	3	10	1.15
41400775--41400799	8	3.1	8	100	0	50	76	0	0	24	0.80
41404014--41404206	91	2.1	91	80	2	217	44	11	10	32	1.76
41404520--41404551	15	2.1	15	94	0	55	28	9	37	25	1.87
41405370--41405453	38	2.2	37	84	12	109	54	0	0	45	0.99
41405399--41405463	28	2.2	29	74	12	71	58	0	0	41	0.98
41405673--41405799	66	1.9	66	90	0	200	33	11	10	44	1.75
41423222--41423263	16	2.5	17	84	11	59	38	0	0	61	0.96
41423221--41423271	23	2.2	24	85	3	68	35	0	1	62	1.06
41423650--41423709	31	1.9	31	86	0	84	18	16	11	53	1.72
41428374--41428430	26	2.2	26	87	0	78	56	14	7	22	1.62
41429448--41429492	21	2.1	22	87	4	65	60	4	4	31	1.37
41441766--41441807	18	2.2	20	87	8	61	61	0	2	35	1.09
41444306--41444352	23	2.0	23	100	0	94	29	17	17	36	1.92
41445119--41445157	11	3.5	11	93	6	62	25	35	0	38	1.56
41445151--41445190	22	1.9	21	85	10	55	25	20	7	47	1.75
41446337--41446368	7	4.6	7	92	0	55	28	0	9	62	1.26
41447271--41447328	21	2.8	21	79	10	57	32	46	13	6	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41447434--41447948	132	3.9	131	94	1	870	35	4	4	56	1.39
41447434--41447948	265	2.0	263	93	3	883	35	4	4	56	1.39
41447902--41447986	39	2.2	38	81	6	100	41	5	5	47	1.52
41447974--41448004	9	3.4	9	90	0	53	38	3	0	58	1.15
41450110--41450148	19	2.0	20	85	14	55	53	5	2	38	1.37
41450738--41450788	22	2.3	21	87	9	75	29	31	0	39	1.57
41450738--41450788	11	4.7	10	86	13	66	29	31	0	39	1.57
41450781--41450820	22	1.9	21	85	10	55	25	20	7	47	1.75
41451707--41452225	265	2.0	265	93	0	896	38	14	12	33	1.85
41452880--41452917	18	2.1	18	90	0	58	21	26	10	42	1.85
41453147--41453197	21	2.4	21	73	0	57	27	47	17	7	1.75
41453303--41453798	132	3.8	131	93	2	836	35	3	4	55	1.39
41453304--41453815	263	1.9	263	92	2	859	36	3	4	55	1.39
41453841--41453871	9	3.4	9	90	0	53	38	3	0	58	1.15
41457855--41457909	20	2.8	20	80	0	56	70	3	3	21	1.18
41457883--41457949	21	3.1	21	75	12	73	65	1	2	29	1.16
41457883--41457949	22	3.1	22	82	4	91	65	1	2	29	1.16
41458376--41458543	29	5.6	30	72	17	118	33	2	0	63	1.14
41458376--41458507	29	4.4	29	77	9	124	32	2	0	64	1.11
41458376--41458506	61	2.2	61	86	8	182	32	2	0	64	1.12
41458493--41458529	12	3.5	11	89	10	51	24	0	0	75	0.80
41459347--41459391	23	2.0	23	91	4	74	46	17	4	31	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41459344--41459407	22	3.0	21	82	12	78	43	18	4	32	1.71
41465562--41465586	7	3.6	7	100	0	50	28	0	0	72	0.86
41467114--41467158	23	2.0	23	86	4	65	48	17	2	31	1.59
41467111--41467167	22	2.6	21	83	8	69	45	19	1	33	1.61
41468209--41468250	16	2.7	16	81	3	50	59	2	35	2	1.23
41473398--41473426	14	2.1	14	100	0	58	41	0	6	51	1.28
41473369--41473598	62	3.7	62	94	0	397	48	8	7	36	1.61
41473454--41473488	14	2.5	14	90	0	52	42	2	5	48	1.41
41477696--41477843	72	2.1	71	88	3	217	19	5	23	51	1.67
41478322--41478366	13	3.4	13	81	3	54	17	8	11	62	1.53
41481594--41481667	9	8.0	9	76	8	51	59	4	0	36	1.16
41481640--41481749	29	3.8	29	70	17	86	57	4	3	34	1.37
41484972--41485143	46	3.7	44	73	14	134	29	20	26	23	1.99
41490036--41490078	21	2.1	20	83	12	52	37	23	18	20	1.94
41493925--41494139	46	4.6	45	74	10	150	27	20	28	23	1.99
41497253--41497311	21	2.9	20	83	11	59	35	0	5	59	1.20
41497253--41497299	21	2.2	21	92	3	76	34	0	6	59	1.23
41497296--41497346	9	5.7	9	77	13	52	29	0	1	68	1.00
41497393--41497431	17	2.3	18	86	8	55	28	0	2	69	1.02
41497367--41497450	25	3.3	25	78	9	64	32	1	3	63	1.19
41505314--41505470	44	3.7	42	75	9	113	33	24	17	24	1.97
41517252--41517769	259	2.0	258	91	1	840	30	20	11	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41520784--41520835	20	2.6	20	81	0	68	34	19	19	26	1.95
41530487--41530521	18	2.0	17	94	5	61	57	0	0	42	0.99
41541138--41541180	20	2.0	22	91	8	72	48	0	0	51	1.00
41541152--41541247	29	3.2	29	75	7	95	58	1	1	39	1.12
41541167--41541247	20	4.1	20	72	15	69	59	1	1	38	1.13
41541158--41541235	9	8.3	9	68	13	50	57	1	1	39	1.15
41541669--41541699	14	2.1	15	94	5	55	41	0	0	58	0.98
41542223--41542288	10	6.8	10	71	13	57	31	0	1	66	1.01
41543787--41543843	9	6.2	9	76	9	53	54	0	1	43	1.10
41543775--41543855	29	2.8	29	79	9	101	53	1	1	44	1.16
41543792--41543838	20	2.3	20	92	0	76	57	0	2	40	1.11
41544059--41544092	18	1.9	18	88	5	52	38	2	2	55	1.30
41553669--41553727	18	3.5	18	75	15	63	42	0	3	54	1.17
41553689--41553986	146	2.0	147	94	1	526	50	10	1	37	1.45
41553974--41554062	38	2.2	41	84	5	112	40	2	5	51	1.38
41558714--41558744	2	15.5	2	100	0	62	0	0	48	51	1.00
41564011--41564085	26	2.9	26	85	0	96	38	10	17	33	1.84
41578774--41578806	3	11.0	3	100	0	66	33	0	33	33	1.58
41598193--41598235	22	2.0	21	86	4	59	39	0	4	55	1.20
41598628--41598837	42	5.0	42	80	4	163	30	18	21	29	1.97
41602340--41602951	240	2.5	241	84	7	769	44	11	11	32	1.77
41602964--41602991	12	2.3	12	100	0	56	78	7	0	14	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41604245--41604348	51	2.1	49	85	3	136	44	8	18	28	1.79
41604328--41604352	13	1.9	13	100	0	50	68	0	16	16	1.22
41604603--41604678	37	2.1	37	100	0	152	32	13	23	30	1.93
41612994--41613052	26	2.3	26	87	0	82	38	11	15	33	1.84
41624768--41624894	56	2.2	59	73	4	134	55	5	0	38	1.23
41624773--41624883	28	4.0	27	72	16	82	56	4	0	38	1.20
41627460--41627542	41	2.0	41	92	0	139	18	18	7	56	1.63
41631753--41631812	30	2.0	30	90	0	93	30	25	5	40	1.77
41633135--41633176	22	2.0	22	90	4	68	35	26	11	26	1.91
41637459--41637518	30	2.0	30	90	0	93	28	25	8	38	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250