genome.fa.s9.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  162  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52088490--52088527	14	2.9	13	81	11	51	18	13	10	57	1.63
52093502--52093568	20	3.3	20	93	4	109	37	10	19	32	1.86
52093513--52093568	11	5.5	11	71	16	57	37	10	19	32	1.86
52093618--52093712	26	3.7	26	94	1	156	27	22	23	27	1.99
52097680--52097849	46	3.7	46	73	13	168	28	28	19	23	1.98
52097685--52097855	93	1.8	93	89	0	270	28	28	19	22	1.98
52100245--52100292	15	3.2	15	80	11	62	58	14	14	12	1.64
52103753--52103968	39	5.5	40	90	4	325	23	23	28	25	2.00
52103749--52103968	79	2.8	80	88	5	333	24	22	27	25	2.00
52176728--52176791	31	2.1	31	93	0	110	23	23	15	37	1.93
52177006--52177077	23	3.1	23	100	0	144	29	20	20	29	1.98
52177127--52177193	20	3.3	20	93	0	116	32	20	11	34	1.90
52177127--52177182	11	5.5	11	71	16	57	32	19	12	35	1.89
52177230--52177277	25	1.9	25	86	0	69	25	16	25	33	1.96
52184649--52184720	23	3.0	24	86	10	94	27	19	20	31	1.97
52184770--52184828	20	3.0	20	94	0	109	32	18	13	35	1.90
52187474--52187556	31	2.7	31	92	3	134	28	25	15	30	1.96
52187776--52187845	25	2.8	25	93	0	113	24	22	25	27	2.00
52188660--52188709	26	1.9	26	84	8	66	22	20	24	34	1.97
52188771--52188856	27	3.1	27	79	14	95	36	10	15	38	1.81
52188935--52188999	27	2.4	27	81	0	76	38	7	24	29	1.83
52189965--52190113	56	2.6	57	88	4	219	32	22	14	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52210360--52210580	40	5.6	40	84	4	288	25	28	23	22	1.99
52210359--52210580	80	2.8	80	87	4	317	26	28	22	22	1.99
52214499--52214606	53	2.0	54	96	1	200	23	18	19	38	1.93
52218939--52219067	46	2.8	45	84	4	152	27	18	28	24	1.98
52219136--52219252	49	2.4	49	81	2	128	29	18	28	23	1.98
52220468--52220507	21	2.0	21	85	5	55	12	37	27	22	1.90
52221479--52221526	15	2.9	16	84	9	62	35	25	4	35	1.75
52221598--52221643	23	2.0	24	86	4	67	45	21	10	21	1.82
52222605--52222646	22	1.9	22	90	0	66	40	4	11	42	1.63
52232580--52232750	48	3.6	45	80	12	168	23	30	20	25	1.98
52232724--52232846	46	2.6	47	84	3	151	25	30	17	27	1.97
52240326--52240491	48	3.6	44	83	9	174	25	28	18	27	1.98
52240326--52240587	46	5.6	47	80	13	176	24	28	18	28	1.98
52244967--52245224	80	3.2	80	93	1	430	24	21	27	27	1.99
52244967--52245224	120	2.2	120	90	2	412	24	21	27	27	1.99
52244963--52245198	40	5.9	40	95	0	400	24	21	27	26	1.99
52253162--52253498	40	8.4	40	94	1	579	24	22	27	26	2.00
52257419--52257516	29	3.4	29	83	4	110	26	31	15	26	1.96
52257482--52257542	29	2.1	29	81	3	70	31	26	16	26	1.96
52257758--52257794	16	2.3	16	90	0	56	8	16	18	56	1.64
52264319--52264388	29	2.4	29	80	0	77	30	27	12	30	1.93
52264625--52264667	16	2.7	16	96	0	77	11	20	16	51	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52265906--52265937	16	2.0	16	100	0	64	18	6	25	50	1.70
52270968--52271033	34	1.9	34	81	6	80	31	24	21	22	1.98
52274392--52274418	12	2.2	12	100	0	54	14	14	22	48	1.81
52275427--52275535	8	14.0	8	82	11	120	61	0	0	38	0.96
52275480--52275514	18	1.9	18	94	0	61	74	0	0	25	0.82
52275426--52275535	7	15.3	7	81	11	100	60	0	0	39	0.97
52275426--52275535	15	7.6	15	80	14	124	60	0	0	39	0.97
52275585--52275623	18	2.2	18	86	4	53	79	0	7	12	0.93
52275567--52275624	26	2.2	26	81	6	64	72	1	5	20	1.13
52281186--52281226	19	2.2	19	86	4	57	21	2	4	70	1.18
52281471--52281514	21	2.1	21	95	0	79	11	18	36	34	1.86
52282140--52282185	16	2.8	16	83	6	56	30	2	28	39	1.69
52290021--52290057	20	2.0	20	89	10	60	27	0	5	67	1.12
52296634--52296740	53	2.0	53	100	0	214	22	19	11	46	1.81
52303228--52303275	18	2.7	18	96	0	87	25	31	8	35	1.85
52307291--52307363	20	3.8	20	67	20	64	45	21	0	32	1.53
52308120--52308350	121	1.9	120	82	4	286	44	9	1	44	1.44
52310978--52311106	44	2.8	45	81	4	152	34	13	23	27	1.93
52315668--52315697	14	2.2	14	94	5	53	36	6	26	30	1.82
52317047--52317081	18	1.9	18	88	0	52	42	20	5	31	1.75
52318768--52318800	17	1.9	17	88	11	50	42	27	6	24	1.78
52323001--52323038	15	2.6	14	84	15	51	0	34	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52336211--52336278	34	2.0	34	100	0	136	32	11	23	32	1.91
52336795--52337242	232	1.9	234	83	5	584	40	20	13	25	1.89
52338235--52338539	168	1.8	168	93	2	533	41	10	15	31	1.82
52339979--52340040	24	2.4	26	81	15	83	48	4	9	37	1.57
52339991--52340040	24	2.0	25	92	3	84	48	6	12	34	1.65
52342361--52342625	47	5.7	48	80	7	246	23	28	19	28	1.98
52342365--52342625	140	1.9	140	84	6	359	23	28	19	28	1.98
52352702--52352770	21	3.4	20	71	15	61	37	1	7	53	1.38
52352757--52352787	15	2.1	14	94	5	53	35	3	6	54	1.42
52360303--52360401	26	3.8	26	80	5	128	31	27	19	22	1.98
52361272--52361317	23	2.0	23	100	0	92	34	17	8	39	1.80
52364132--52364397	46	6.0	46	83	7	307	22	25	13	39	1.90
52364314--52364386	38	1.9	38	97	0	137	24	26	15	34	1.94
52368002--52368063	28	2.2	28	94	0	106	33	27	8	30	1.86
52368172--52368261	28	3.2	27	82	7	110	20	23	23	33	1.97
52368182--52368272	27	3.2	28	82	4	94	21	25	19	32	1.97
52368172--52368286	55	2.1	56	82	8	137	19	23	21	35	1.96
52375829--52375890	28	2.2	28	94	0	106	33	27	8	30	1.86
52375998--52376087	28	3.2	27	85	7	119	20	24	23	32	1.98
52375998--52376112	55	2.1	56	83	8	146	19	24	21	34	1.96
52381016--52381701	342	2.0	342	99	0	1363	35	20	20	23	1.96
52384259--52384316	25	2.3	26	85	11	77	22	12	1	63	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52386384--52386410	13	2.1	13	100	0	54	22	25	29	22	1.99
52393850--52393980	47	2.8	47	85	0	172	32	28	15	23	1.95
52400300--52400340	22	1.9	22	85	14	59	36	7	21	34	1.82
52408440--52408486	23	2.0	23	83	0	58	23	31	8	36	1.85
52409814--52409866	23	2.3	23	80	3	63	20	1	3	73	1.08
52416421--52416548	48	2.6	49	80	4	134	22	26	21	28	1.99
52416567--52416730	49	3.4	49	80	6	160	23	28	19	28	1.98
52416605--52416742	49	2.9	47	85	3	170	23	28	19	28	1.98
52419123--52419157	17	2.1	16	94	5	61	42	25	5	25	1.77
52423175--52423218	13	3.2	14	87	12	65	52	6	13	27	1.66
52424065--52424109	22	2.1	21	87	4	63	44	4	11	40	1.60
52427169--52427733	23	24.5	23	69	12	243	39	22	5	32	1.78
52427154--52427568	46	9.0	46	77	7	362	38	22	5	33	1.77
52427170--52427618	233	1.9	229	88	1	673	39	22	5	32	1.77
52428236--52428266	15	2.1	15	93	0	53	51	19	3	25	1.62
52429782--52429967	74	2.5	75	71	12	166	19	23	19	37	1.94
52429913--52429978	24	2.8	24	79	6	71	18	22	21	37	1.94
52433861--52434044	40	4.6	40	83	6	230	25	22	26	25	2.00
52444028--52444084	23	2.5	23	85	0	69	22	24	19	33	1.97
52444047--52444106	23	2.6	23	91	0	102	21	18	20	40	1.92
52444250--52444312	33	1.9	33	86	0	90	23	20	26	28	1.99
52450500--52450541	2	21.0	2	100	0	84	0	0	50	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52450706--52450863	43	3.7	44	77	9	164	25	19	25	29	1.98
52457395--52457546	44	3.5	43	81	12	179	23	15	26	34	1.95
52457379--52457543	43	3.8	43	78	13	178	23	15	26	35	1.94
52458820--52458865	23	2.0	23	95	0	83	34	10	21	32	1.88
52467466--52467771	46	6.6	46	70	15	141	27	18	29	24	1.98
52467514--52467771	138	1.9	139	82	4	333	27	18	28	24	1.98
52474207--52474231	9	2.8	9	100	0	50	24	40	24	12	1.88
52475690--52475761	32	2.2	31	79	13	83	52	1	4	41	1.29
52476704--52476837	25	5.6	25	77	12	131	20	23	17	38	1.93
52476715--52476831	22	5.0	22	77	7	83	19	23	17	38	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250