genome.fa.s9.2.7.7.80.10.50.1000.195.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  195  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60944122--60944276	3	51.7	3	66	19	65	60	2	7	30	1.37
60944118--60944200	31	2.5	31	80	9	85	59	2	6	32	1.35
60946059--60946110	16	3.2	16	94	0	86	28	0	36	34	1.58
60946091--60946185	45	2.1	44	88	1	136	34	5	27	32	1.79
60946347--60946381	18	2.0	17	88	5	52	54	0	0	45	0.99
60946305--60946377	27	2.7	27	76	8	76	52	2	0	45	1.15
60946493--60946527	18	2.0	17	88	5	52	54	0	0	45	0.99
60946266--60946539	146	1.9	148	96	1	507	46	3	2	47	1.34
60946476--60946766	118	2.4	120	90	3	464	50	5	2	42	1.36
60946611--60946645	18	2.0	17	88	5	52	60	0	0	40	0.97
60946521--60946706	61	3.1	61	67	16	172	49	7	2	40	1.45
60946721--60946752	16	1.9	17	93	6	57	46	0	0	53	1.00
60949437--60949471	14	2.4	14	95	4	61	65	0	25	8	1.21
60949447--60949491	19	2.5	18	82	17	58	66	0	26	6	1.16
60949894--60949928	18	1.9	18	94	0	61	60	8	2	28	1.41
60949969--60950060	29	3.1	29	84	1	121	29	25	3	42	1.70
60954106--60954140	15	2.3	15	90	9	54	51	22	0	25	1.48
60954807--60955208	41	9.9	41	89	3	535	33	27	18	20	1.96
60954846--60955210	121	3.0	122	89	3	547	34	26	18	20	1.96
60955323--60955503	64	2.9	63	89	8	262	41	17	8	32	1.79
60961188--60961222	15	2.3	15	90	9	54	51	22	0	25	1.48
60961890--60962294	41	9.9	41	89	1	535	34	27	18	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60961929--60962294	82	4.5	82	95	0	617	34	27	18	20	1.95
60962409--60962589	64	2.9	63	89	8	262	41	17	8	32	1.79
60981694--60981728	18	2.0	17	88	5	52	42	2	0	54	1.15
60985046--60985167	45	2.7	45	92	0	199	42	13	21	22	1.87
60985046--60985113	23	3.0	23	63	25	54	45	14	19	20	1.85
60989474--60989519	23	2.0	23	100	0	92	21	8	13	56	1.63
60991175--60991234	21	3.1	19	78	11	59	33	3	3	60	1.30
60991163--60991237	10	7.5	10	73	11	64	36	2	2	58	1.26
60993965--60994003	18	2.2	17	86	4	51	43	5	0	51	1.24
61005756--61005818	31	2.0	31	90	6	101	44	9	9	36	1.70
61006858--61006901	15	2.9	15	79	3	52	20	2	4	72	1.13
61007179--61007218	20	2.0	20	85	14	55	57	5	5	32	1.42
61017803--61017878	38	2.0	38	100	0	152	50	10	7	31	1.66
61021190--61021215	11	2.4	11	100	0	52	0	7	0	92	0.39
61025257--61025292	16	2.2	16	100	0	72	25	0	36	38	1.56
61025422--61025731	157	2.0	157	94	0	539	44	3	4	47	1.41
61025485--61025734	76	3.1	81	63	24	186	46	4	3	45	1.39
61025468--61025789	157	2.0	155	81	5	349	46	4	4	44	1.44
61035995--61036028	17	1.9	18	88	5	52	23	0	8	67	1.18
61036207--61036266	29	2.1	29	80	0	66	28	6	15	50	1.69
61038404--61038454	27	2.0	26	85	11	70	56	3	0	39	1.18
61038470--61038510	21	2.0	21	90	0	64	58	0	2	39	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61038907--61038945	2	20.5	2	89	10	64	48	0	0	51	1.00
61041530--61041560	16	2.0	16	93	6	55	48	0	12	38	1.42
61041768--61041797	12	2.5	12	94	0	51	16	13	16	53	1.73
61045897--61046218	46	7.0	46	93	0	500	38	13	24	22	1.91
61045897--61046255	46	7.8	46	92	0	495	39	13	23	22	1.90
61047889--61047935	24	2.0	24	83	8	60	27	34	17	21	1.95
61061595--61061636	21	2.0	21	100	0	84	57	4	14	23	1.56
61065667--61065691	3	8.3	3	100	0	50	64	0	0	36	0.94
61065615--61065681	27	2.3	29	80	17	86	70	1	8	19	1.22
61067589--61067620	12	2.7	12	100	0	64	53	0	15	31	1.43
61069554--61069687	54	2.5	54	96	0	241	24	17	24	32	1.97
61070267--61070311	23	2.0	23	82	8	56	37	8	13	40	1.76
61073639--61073674	18	2.0	18	94	0	63	52	5	13	27	1.63
61074254--61074287	16	2.1	16	89	10	52	55	0	8	35	1.31
61074638--61074708	18	3.9	18	74	9	63	30	9	15	43	1.79
61074725--61074788	18	3.6	18	78	0	74	40	10	10	37	1.76
61074715--61074797	36	2.3	36	85	0	103	39	8	12	39	1.73
61075487--61075539	26	2.0	26	100	0	106	69	3	7	18	1.28
61075476--61075528	26	2.2	23	78	18	63	69	1	7	20	1.22
61086704--61086733	13	2.3	13	94	0	51	70	0	23	6	1.11
61087813--61087851	19	2.1	19	90	0	60	43	0	20	35	1.52
61092036--61092109	36	2.0	37	94	5	132	18	17	32	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61101239--61101414	46	3.8	46	79	12	216	20	21	29	28	1.98
61101236--61101407	93	1.8	93	96	0	317	20	21	29	27	1.98
61105317--61105380	29	2.2	30	83	5	78	28	9	18	43	1.81
61105543--61105567	5	5.0	5	100	0	50	60	0	0	40	0.97
61106508--61106548	15	2.9	14	80	20	57	29	0	0	70	0.87
61115428--61115467	17	2.4	17	79	4	55	27	2	2	67	1.16
61117461--61117515	27	2.0	27	100	0	110	36	10	14	38	1.81
61122421--61122482	30	2.1	30	90	0	97	25	4	12	56	1.56
61128483--61128580	24	4.1	24	89	2	135	11	35	15	37	1.83
61128495--61128558	12	5.3	12	71	0	56	9	35	17	37	1.82
61132247--61132279	17	1.9	17	100	0	66	42	0	6	51	1.26
61133856--61133945	31	2.9	32	86	5	130	27	0	15	56	1.40
61134242--61134291	25	2.0	25	100	0	100	32	32	4	32	1.76
61137461--61137615	60	2.6	58	77	15	140	31	3	2	61	1.27
61137570--61137606	18	1.9	19	89	10	58	32	2	2	62	1.23
61139839--61139867	3	9.7	3	100	0	58	31	0	0	68	0.89
61149200--61149244	23	2.0	23	86	8	65	53	2	2	42	1.25
61151210--61151240	14	2.2	14	94	0	53	74	0	3	22	0.96
61151780--61151817	18	2.1	18	90	9	60	39	13	0	47	1.42
61152273--61152317	20	2.3	20	84	3	56	57	2	4	35	1.31
61153031--61153210	89	2.0	89	89	0	270	41	18	13	26	1.87
61160122--61160244	46	2.6	46	84	7	142	21	26	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61166370--61166558	51	3.7	50	80	3	173	25	18	24	31	1.98
61170455--61170522	30	2.3	30	84	5	84	47	5	19	27	1.72
61172722--61172949	46	5.0	46	89	1	296	39	14	23	22	1.91
61174727--61174755	14	2.0	15	93	6	51	55	0	0	44	0.99
61178523--61178554	2	16.0	2	100	0	64	0	50	0	50	1.00
61182105--61182332	46	5.0	46	89	1	296	39	14	23	22	1.91
61184112--61184140	14	2.0	15	93	6	51	55	0	0	44	0.99
61187907--61187938	2	16.0	2	100	0	64	0	50	0	50	1.00
61191079--61191191	29	4.2	27	69	22	85	55	0	0	43	1.05
61191229--61191286	24	2.3	25	80	14	66	31	31	6	31	1.84
61191648--61191696	25	2.0	24	88	4	71	40	4	0	55	1.19
61194246--61194314	18	3.9	16	75	16	57	17	7	1	73	1.12
61194297--61194344	14	3.4	14	77	11	53	16	2	4	77	1.03
61194373--61194484	21	5.0	21	73	16	82	37	0	0	61	1.02
61194373--61194481	23	4.8	22	76	14	96	35	0	0	63	1.01
61194418--61194447	15	2.0	15	93	0	51	30	0	0	70	0.88
61194424--61194465	20	2.0	22	86	9	61	30	0	2	66	1.04
61194456--61194488	14	2.3	15	94	5	59	42	0	0	57	0.98
61194710--61194752	19	2.2	19	84	12	52	53	0	4	41	1.21
61194810--61194859	20	2.5	19	80	6	64	60	0	4	36	1.16
61195290--61195366	40	1.9	40	89	5	120	37	6	3	51	1.46
61195377--61195442	32	2.1	32	100	0	132	53	3	9	34	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61195641--61195678	17	2.2	17	95	0	67	60	0	0	39	0.97
61195733--61195771	17	2.2	17	90	9	60	53	5	2	38	1.37
61195780--61195818	21	1.9	20	89	5	60	66	2	0	30	1.05
61195781--61195852	32	2.1	35	87	7	105	62	1	0	36	1.04
61195808--61195851	20	2.1	22	87	8	65	59	0	0	40	0.98
61195808--61195884	23	3.5	22	75	8	68	54	1	0	44	1.08
61195893--61195933	19	2.2	18	87	12	57	80	2	0	17	0.82
61195910--61195983	28	2.7	27	77	8	78	74	2	4	18	1.10
61195892--61195983	9	10.0	9	73	8	60	76	3	3	17	1.06
61205983--61206038	24	2.4	24	79	8	62	62	3	8	25	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250