genome.fa.s9.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  161  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51707456--51707533	2	39.0	2	100	0	156	0	50	0	50	1.00
51714391--51714415	13	1.9	13	100	0	50	68	0	0	32	0.90
51714526--51714555	15	2.0	15	93	0	51	30	0	0	70	0.88
51715955--51716004	13	3.6	14	82	17	68	68	2	0	30	1.01
51715956--51715999	23	1.9	23	86	9	63	68	2	0	29	1.02
51721998--51722040	11	3.8	11	80	17	52	32	0	2	65	1.06
51730927--51730983	30	1.9	30	85	0	78	24	36	28	10	1.88
51734745--51734810	31	2.1	32	85	5	89	10	31	0	57	1.33
51735004--51735046	23	1.9	23	85	4	61	62	4	2	30	1.28
51737126--51737216	44	2.1	44	89	0	137	46	3	7	42	1.49
51750300--51750341	20	2.1	20	100	0	84	40	4	14	40	1.67
51750304--51750349	20	2.6	17	86	13	58	41	4	13	41	1.63
51758948--51758996	17	2.7	18	81	15	57	55	2	0	42	1.11
51761510--51761544	18	1.9	18	94	0	61	37	2	0	60	1.12
51762930--51762978	20	2.4	20	82	3	62	26	6	2	65	1.27
51765981--51766223	65	3.7	64	76	5	207	30	16	13	39	1.87
51767971--51767996	13	2.0	13	100	0	52	53	0	15	30	1.42
51769805--51769867	30	2.1	30	93	0	108	23	4	12	58	1.53
51769988--51770015	11	2.5	11	100	0	56	75	0	0	25	0.81
51771134--51771164	13	2.3	14	94	5	55	61	6	0	32	1.21
51771613--51771640	14	2.0	14	100	0	56	21	7	28	42	1.79
51771847--51771897	20	2.5	21	81	9	61	11	13	7	66	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51773831--51773855	11	2.3	11	100	0	50	36	16	0	48	1.46
51792117--51792179	30	2.1	30	93	0	108	39	20	20	19	1.92
51792112--51792311	81	2.5	81	92	0	337	35	18	23	23	1.96
51793304--51793384	39	2.1	39	84	9	103	37	6	6	50	1.52
51799365--51799406	17	2.3	19	80	8	52	21	0	14	64	1.29
51799372--51799412	17	2.4	17	87	4	55	24	0	12	63	1.28
51813283--51813594	151	2.1	151	99	0	615	28	14	13	42	1.84
51815038--51815076	8	4.6	8	84	9	51	35	0	0	64	0.94
51815038--51815092	17	3.2	16	78	12	56	38	0	0	61	0.96
51815038--51815092	18	3.2	16	82	12	65	38	0	0	61	0.96
51818705--51818764	28	2.0	30	81	15	72	30	5	6	58	1.45
51819166--51819206	22	1.9	21	90	5	64	41	0	0	58	0.98
51819328--51819375	23	2.2	22	81	7	53	50	0	4	45	1.21
51819432--51819490	31	2.0	29	83	12	75	55	1	3	38	1.26
51819424--51819486	26	2.4	25	81	7	72	57	1	1	39	1.18
51819824--51819893	30	2.4	29	80	7	79	34	20	7	38	1.80
51827290--51827330	5	8.2	5	89	10	66	39	19	0	41	1.52
51836693--51836855	84	2.0	83	82	3	202	41	17	8	32	1.79
51837182--51837269	44	2.0	44	100	0	176	29	2	13	54	1.51
51837043--51837459	229	1.8	225	83	4	543	39	8	12	39	1.74
51837505--51837559	28	2.0	28	82	7	67	29	5	1	63	1.27
51837591--51837668	37	2.1	38	80	7	88	39	0	2	57	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51837697--51837862	85	2.0	84	86	7	237	36	9	14	40	1.78
51837690--51837898	85	2.4	84	77	14	219	33	9	17	38	1.83
51843565--51843595	16	1.9	16	93	0	53	32	19	0	48	1.49
51851301--51851333	2	16.5	2	100	0	66	0	48	0	51	1.00
51854176--51854241	29	2.3	29	80	12	73	59	1	3	36	1.22
51854429--51854470	21	2.0	21	85	0	57	26	21	9	42	1.83
51854686--51854710	13	1.9	13	100	0	50	36	0	0	64	0.94
51870825--51870900	22	3.7	21	76	15	68	40	17	6	35	1.75
51870854--51870951	35	2.7	37	87	12	150	35	16	10	37	1.82
51870861--51870951	19	4.9	19	92	8	161	36	15	10	37	1.83
51871070--51871108	21	1.9	20	84	5	51	10	2	15	71	1.23
51871301--51871529	45	5.1	45	74	10	207	24	27	16	32	1.96
51871473--51871685	78	2.7	78	92	0	354	23	24	19	31	1.98
51871718--51871880	89	1.9	89	83	5	215	26	23	17	31	1.97
51871847--51872217	78	4.8	78	91	1	573	24	25	19	31	1.98
51872251--51872411	89	1.8	89	84	5	220	27	23	18	31	1.97
51871385--51872437	454	2.3	457	79	10	1131	25	23	18	32	1.97
51880978--51881035	22	2.6	22	81	7	64	39	15	6	37	1.74
51880978--51881104	19	6.5	21	82	10	69	39	14	9	36	1.79
51881014--51881104	19	4.9	19	90	8	152	37	15	10	36	1.83
51881007--51881096	35	2.5	37	89	10	143	35	15	11	37	1.83
51881028--51881083	17	3.5	15	88	9	60	35	16	10	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51881223--51881261	21	1.9	20	84	5	51	10	2	15	71	1.23
51887038--51887102	22	3.0	22	80	8	64	44	7	1	46	1.41
51890617--51890749	49	2.7	49	82	2	160	21	25	21	30	1.98
51890571--51890749	98	1.8	97	83	3	234	24	26	20	29	1.99
51890812--51890933	46	2.7	45	81	12	142	26	27	15	30	1.96
51893331--51893458	47	2.7	47	81	0	148	32	27	17	22	1.96
51897877--51897902	8	3.2	8	100	0	52	26	26	0	46	1.53
51913636--51913753	46	2.6	46	84	8	150	34	15	22	27	1.94
51915152--51915322	46	3.7	46	78	4	148	29	21	18	30	1.96
51920216--51920683	120	3.9	120	98	0	893	43	2	6	47	1.41
51920831--51920921	45	2.0	45	85	2	121	37	28	6	27	1.82
51920902--51920970	16	4.2	16	92	3	120	36	37	1	24	1.65
51920902--51920970	33	2.1	32	94	2	120	36	37	1	24	1.65
51921606--51921870	27	9.8	27	83	4	320	29	23	7	40	1.82
51921606--51921870	81	3.3	81	94	2	426	29	23	7	40	1.82
51921902--51921998	27	3.6	27	76	4	97	42	20	8	28	1.81
51921902--51922026	27	4.6	27	77	7	85	42	20	8	29	1.80
51921955--51922084	27	4.7	27	77	11	122	43	18	6	31	1.74
51921927--51922088	27	5.9	27	72	11	105	41	17	8	32	1.79
51922129--51922202	27	2.7	27	76	12	71	37	20	20	21	1.94
51922913--51922999	20	4.3	20	92	2	140	40	10	18	31	1.84
51923049--51923145	26	3.8	26	93	1	162	25	24	23	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51923049--51923153	51	2.1	49	92	7	176	28	22	22	25	1.99
51923291--51923382	42	2.2	42	88	0	130	30	13	20	35	1.91
51925356--51925389	17	2.0	17	100	0	68	35	17	35	11	1.87
51934658--51934707	26	1.9	26	95	0	91	32	20	10	38	1.85
51935604--51935637	15	2.2	16	89	5	52	64	0	2	32	1.08
51939671--51939748	18	4.4	18	74	8	70	55	1	0	43	1.08
51939725--51939764	20	2.0	20	90	0	62	55	5	0	40	1.22
51942372--51942425	21	2.6	21	88	11	92	22	31	31	14	1.94
51951852--51951900	20	2.4	21	96	3	91	38	24	0	36	1.56
51952889--51952952	31	2.1	31	96	0	119	40	18	0	40	1.51
51954473--51954528	28	2.0	28	96	0	103	41	21	8	28	1.83
51959455--51959507	26	2.0	26	96	0	97	15	22	33	28	1.94
51959379--51959641	102	2.6	102	90	3	404	19	20	30	30	1.97
51966934--51966985	26	2.0	26	96	0	95	13	23	34	28	1.92
51966856--51967122	103	2.6	105	93	3	459	18	20	30	30	1.96
51969190--51969286	47	2.1	47	98	0	185	21	18	21	38	1.94
51975677--51975709	12	2.8	12	95	0	57	33	27	27	12	1.92
51996130--51996188	29	2.0	29	100	0	118	33	16	10	38	1.83
52000934--52000959	13	2.0	13	100	0	52	15	30	38	15	1.88
52013524--52013569	22	2.0	24	84	16	62	39	6	0	54	1.26
52021521--52021550	6	5.2	6	96	4	53	16	0	0	83	0.65
52023811--52023844	16	2.1	17	94	5	61	41	0	11	47	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52039344--52039415	33	2.2	33	85	7	92	27	26	20	25	1.99
52059778--52060025	76	3.3	76	82	4	259	35	22	18	23	1.96
52059885--52060025	40	3.6	40	75	12	159	38	24	17	19	1.93
52072826--52072910	42	2.0	42	97	0	161	48	24	7	20	1.74
52077088--52077134	24	2.0	24	86	0	67	14	19	8	57	1.63
52077208--52077412	76	2.7	76	78	4	198	37	20	17	25	1.94
52083831--52083860	3	10.3	3	92	7	53	30	0	0	70	0.88
52084990--52085272	76	3.7	76	81	3	320	26	21	19	32	1.97
52085067--52085198	40	3.4	39	68	16	112	25	21	21	31	1.98
52087094--52087146	26	2.0	26	96	0	97	16	1	22	58	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250