genome.fa.s9.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  153  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49347097--49347160	32	2.1	30	82	11	76	42	1	9	46	1.45
49352853--49352929	35	2.2	35	93	4	129	49	7	23	19	1.74
49353032--49353110	39	2.0	39	100	0	158	39	5	27	27	1.77
49358689--49358761	37	2.0	37	91	0	119	26	21	6	45	1.77
49360830--49360904	21	3.5	22	83	7	91	38	26	21	13	1.90
49361298--49361338	15	2.7	15	88	0	64	53	12	0	34	1.38
49374828--49374862	13	2.7	13	90	0	52	28	25	20	25	1.99
49380877--49380940	13	5.2	12	81	10	60	37	0	4	57	1.19
49380887--49380920	13	2.6	13	100	0	68	44	0	5	50	1.26
49382522--49382677	33	4.7	33	71	7	93	30	16	25	26	1.97
49382749--49382955	46	4.5	46	85	1	236	46	13	20	19	1.83
49382739--49382947	91	2.3	92	83	0	258	47	12	20	19	1.82
49387884--49387918	8	4.4	8	92	0	52	22	5	0	71	1.07
49388319--49388353	18	1.9	18	88	11	54	14	8	2	74	1.17
49388414--49388454	17	2.3	18	84	16	50	24	2	17	56	1.53
49389481--49389534	6	8.5	6	80	11	63	16	1	3	77	1.00
49394301--49394464	71	2.3	71	88	0	229	29	23	17	29	1.97
49398635--49398698	16	3.9	16	76	11	67	39	25	6	29	1.80
49404934--49404980	23	2.0	23	100	0	94	21	12	17	48	1.79
49406569--49406713	51	2.8	51	90	4	229	35	26	8	28	1.86
49406862--49406964	33	3.2	32	77	14	104	22	44	2	30	1.67
49414397--49414504	56	1.9	55	92	1	180	41	12	8	37	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49415271--49415572	76	4.0	76	89	1	457	38	5	11	44	1.65
49415271--49415555	151	1.9	150	91	0	471	38	5	11	44	1.65
49417581--49417628	18	2.7	18	83	3	62	18	27	37	16	1.92
49418994--49419056	28	2.3	28	83	5	76	23	15	9	50	1.73
49423061--49423147	33	2.7	32	80	5	95	14	44	5	34	1.70
49423192--49423330	50	2.7	52	84	8	162	24	30	5	39	1.77
49441736--49441766	9	3.3	9	91	8	53	77	0	0	22	0.77
49446178--49446208	9	3.3	9	91	8	53	77	0	0	22	0.77
49453463--49453487	10	2.5	10	100	0	50	60	0	0	40	0.97
49461693--49461719	13	2.1	13	100	0	54	25	29	22	22	1.99
49471693--49472697	332	3.0	332	99	0	2001	43	12	10	33	1.76
49478735--49478799	32	2.0	32	81	3	76	47	10	3	38	1.54
49485529--49485570	18	2.4	17	84	7	57	52	2	0	45	1.13
49487411--49487474	2	33.5	2	75	9	53	42	3	1	53	1.26
49487384--49487438	21	2.8	20	78	10	60	36	1	5	56	1.33
49487419--49487474	14	4.2	14	77	11	64	42	3	0	53	1.18
49499595--49500073	77	6.1	77	88	6	662	28	16	20	34	1.94
49499595--49500239	154	4.1	155	81	12	722	28	16	20	34	1.94
49499969--49499998	14	2.1	14	93	0	51	16	10	6	66	1.41
49500056--49500090	15	2.2	16	90	5	54	14	11	5	68	1.37
49499892--49500523	88	7.0	90	73	15	490	27	16	18	37	1.93
49500223--49500270	14	3.5	13	82	2	51	22	12	4	60	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49500328--49500362	14	2.5	14	100	0	70	17	20	5	57	1.60
49499892--49500521	180	3.5	176	76	16	632	27	16	18	36	1.93
49499907--49500168	92	2.9	88	89	6	339	28	14	19	37	1.91
49501829--49501885	29	2.0	29	100	0	114	49	14	22	14	1.79
49502391--49502437	18	2.5	19	89	3	69	42	6	2	48	1.40
49502457--49502491	17	2.0	18	88	5	54	28	2	2	65	1.21
49512981--49513368	48	8.0	48	92	4	629	34	6	27	31	1.82
49512981--49513368	146	2.7	144	90	4	638	34	6	27	31	1.82
49519472--49519526	28	2.0	28	85	0	74	41	14	14	29	1.85
49520898--49521008	38	3.0	37	72	18	97	38	1	2	56	1.24
49520958--49521011	20	2.6	20	80	16	65	38	1	1	57	1.20
49520949--49520997	25	1.9	26	83	4	64	38	2	0	59	1.09
49521308--49521345	13	2.8	14	84	4	51	76	0	7	15	1.01
49522407--49522519	45	2.5	45	86	2	174	20	18	19	41	1.90
49522497--49522549	6	8.7	6	80	2	61	20	22	13	43	1.86
49522501--49522549	18	2.7	18	87	3	71	20	22	14	42	1.88
49523272--49523308	9	4.1	9	90	10	58	81	0	0	18	0.70
49523275--49523311	16	2.3	16	90	9	58	83	0	0	16	0.64
49523274--49523305	10	3.4	10	91	8	50	84	0	0	15	0.63
49533999--49534071	33	2.1	34	80	12	87	23	30	19	27	1.98
49536672--49536746	33	2.3	33	84	6	100	16	21	42	20	1.89
49540781--49540965	79	2.3	82	84	7	238	25	27	23	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49540762--49540965	40	5.1	40	83	8	238	25	26	23	24	2.00
49547079--49547263	79	2.3	82	84	7	238	25	27	22	24	2.00
49547060--49547263	40	5.1	40	82	8	238	25	27	22	25	2.00
49558741--49558790	10	5.0	10	79	13	50	66	2	8	24	1.29
49558741--49558780	20	2.0	20	90	9	64	65	2	7	25	1.32
49559434--49559472	20	2.0	20	85	10	53	23	15	0	61	1.33
49559473--49559653	96	1.9	96	91	0	299	32	26	14	25	1.95
49560759--49560870	5	22.6	5	72	17	83	74	0	2	22	1.00
49560780--49560870	9	9.9	9	70	10	51	74	1	3	20	1.02
49560765--49560869	34	3.2	32	76	14	108	74	0	2	21	1.01
49560777--49560870	39	2.4	39	82	7	111	74	1	3	21	1.02
49564582--49564631	10	5.0	10	79	13	50	66	2	8	24	1.29
49564582--49564621	20	2.0	20	90	9	64	65	2	7	25	1.32
49572336--49572427	24	3.8	24	86	0	112	33	28	14	23	1.94
49577489--49577535	23	2.0	23	100	0	94	46	14	17	21	1.83
49580399--49580490	24	3.8	24	88	0	121	33	29	14	22	1.93
49580404--49580502	24	4.1	23	83	8	85	32	28	16	23	1.96
49585630--49585751	43	2.9	42	82	2	145	28	23	16	31	1.96
49587734--49587758	6	4.2	6	100	0	50	32	0	32	36	1.58
49591731--49591806	34	2.2	34	83	2	89	31	23	18	26	1.97
49594418--49594481	18	3.4	18	71	12	65	48	15	12	23	1.79
49594406--49594483	39	2.0	39	100	0	156	51	12	12	23	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49625463--49625500	19	2.0	19	94	0	67	36	28	15	18	1.92
49626179--49626257	13	6.5	13	75	16	89	48	15	0	36	1.45
49626179--49626257	36	2.2	36	93	0	131	48	15	0	36	1.45
49626215--49626258	23	1.9	23	95	0	79	52	13	0	34	1.41
49626795--49626953	40	4.0	40	82	5	169	35	22	22	20	1.96
49627256--49627309	15	3.7	15	76	16	51	22	1	35	40	1.65
49627257--49627311	21	2.6	21	80	8	58	23	1	36	38	1.66
49627850--49627883	14	2.3	15	85	10	52	14	0	47	38	1.45
49629576--49629750	45	3.8	45	74	10	167	21	19	29	30	1.97
49635099--49635295	43	4.6	42	75	9	166	28	14	23	33	1.94
49642895--49643067	41	4.3	41	88	3	235	32	16	28	23	1.96
49644586--49644625	18	2.3	17	79	8	53	47	5	2	45	1.38
49649411--49649877	120	3.9	120	97	1	884	43	2	6	47	1.41
49649411--49649877	239	2.0	240	97	1	893	43	2	6	47	1.41
49650025--49650115	45	2.0	45	85	2	121	37	28	6	27	1.82
49650096--49650164	16	4.2	16	92	3	120	36	37	1	24	1.65
49650096--49650164	33	2.1	32	94	2	120	36	37	1	24	1.65
49651513--49651566	26	2.1	26	82	3	65	51	3	3	40	1.37
49654970--49654996	3	9.0	3	100	0	54	33	0	0	66	0.92
49655928--49655995	17	3.8	17	79	12	64	32	2	1	63	1.18
49657384--49657480	9	10.2	9	69	14	54	27	2	3	67	1.17
49657418--49657471	19	2.8	19	83	8	56	35	0	3	61	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49657429--49657471	19	2.3	19	92	4	70	39	0	0	60	0.97
49658232--49658481	55	4.5	55	82	9	290	27	9	13	49	1.73
49658241--49658471	116	2.0	116	89	3	358	26	9	13	50	1.72
49658441--49658505	33	2.0	33	90	0	103	29	12	12	46	1.78
49666339--49666381	20	2.1	21	86	4	61	48	4	4	41	1.44
49666944--49666993	21	2.4	22	77	12	61	0	34	0	66	0.92
49667198--49667284	3	30.3	3	69	17	60	64	3	1	31	1.17
49667218--49667284	19	3.5	20	75	19	61	67	2	1	28	1.14
49669399--49669440	21	2.0	21	90	0	66	0	23	0	76	0.79
49669651--49669737	3	30.3	3	69	17	60	63	3	1	32	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250