genome.fa.s9.2.7.7.80.10.50.1000.197.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  197  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61562055--61562221	9	17.6	9	77	10	163	31	0	21	46	1.56
61562088--61562204	39	3.0	39	96	0	207	32	0	22	45	1.53
61562070--61562209	39	3.4	43	83	13	170	31	0	22	45	1.58
61562055--61562221	57	2.9	58	82	6	198	31	0	21	46	1.56
61562055--61562210	48	3.2	48	80	3	188	32	0	22	44	1.58
61562401--61562887	241	2.0	241	96	0	902	32	14	18	34	1.91
61563353--61563382	14	2.2	13	94	5	51	36	13	0	50	1.42
61566440--61566555	37	3.1	37	83	8	128	26	12	46	14	1.80
61567376--61567407	15	2.1	15	94	0	55	28	6	0	65	1.16
61567867--61567891	13	1.9	13	100	0	50	8	0	24	68	1.16
61569416--61569685	41	6.6	41	90	5	370	27	19	24	28	1.98
61570846--61570906	14	4.0	14	74	14	50	54	26	0	19	1.45
61571341--61571444	40	2.6	38	78	14	104	21	20	20	38	1.94
61571984--61572032	25	2.0	25	100	0	98	53	4	12	30	1.57
61574671--61574700	7	4.3	7	95	0	51	3	0	13	83	0.77
61579647--61579737	33	2.8	33	87	0	137	31	40	8	18	1.81
61582650--61582701	15	3.2	15	73	19	50	53	1	1	42	1.23
61583060--61583113	26	2.2	24	87	12	74	44	3	7	44	1.49
61583078--61583150	37	2.0	37	100	0	146	49	1	8	41	1.41
61589599--61589649	22	2.3	22	78	18	61	9	21	1	66	1.31
61589643--61589680	17	2.2	18	85	4	51	10	23	2	63	1.39
61617965--61617998	17	1.9	17	88	5	50	55	0	11	32	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61622000--61622057	30	1.9	30	82	10	73	60	12	5	22	1.51
61631198--61631251	25	2.2	25	82	0	63	59	1	1	37	1.19
61633235--61633296	17	3.7	16	79	10	61	48	8	0	43	1.32
61634227--61634335	56	2.0	54	96	3	200	32	11	16	39	1.85
61643871--61644047	83	2.2	81	87	2	246	46	13	7	32	1.72
61646507--61646572	29	2.2	30	86	10	91	22	24	10	42	1.85
61653976--61654034	30	2.0	30	90	6	93	22	38	25	13	1.90
61678348--61678687	171	2.0	171	95	0	617	42	15	17	23	1.88
61689384--61689736	196	1.8	196	79	2	413	28	20	11	39	1.88
61689836--61689911	35	2.2	35	97	2	145	34	13	7	44	1.72
61696798--61696843	19	2.3	21	85	7	60	36	6	4	52	1.47
61696809--61696873	23	3.0	21	71	10	58	35	3	6	55	1.40
61704114--61704157	22	2.0	22	86	8	63	38	9	6	45	1.63
61704136--61704239	52	2.0	53	98	1	201	41	13	10	34	1.79
61708148--61708207	30	2.0	30	90	0	93	25	1	13	60	1.43
61710627--61710762	23	5.9	21	70	17	83	19	4	35	41	1.71
61713097--61713317	40	5.5	40	97	0	406	29	28	19	21	1.98
61719928--61719995	29	2.3	29	97	0	127	39	25	0	35	1.56
61720169--61720282	56	2.0	56	98	0	219	23	11	7	57	1.57
61720372--61720410	21	1.9	20	94	0	60	43	0	7	48	1.31
61727823--61727854	3	10.7	3	93	0	55	31	3	0	65	1.08
61727807--61727868	12	5.9	10	75	18	56	27	3	4	64	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61736236--61736452	40	5.2	40	88	10	312	28	29	21	21	1.98
61736236--61736452	81	2.6	84	89	8	329	28	29	21	21	1.98
61743020--61743091	27	2.6	28	86	8	94	40	23	1	34	1.64
61743466--61743503	20	1.9	20	94	0	67	42	0	7	50	1.31
61748955--61749121	84	2.0	85	91	3	275	36	14	12	35	1.85
61749485--61749659	89	2.0	89	80	6	194	37	19	10	32	1.85
61749759--61749818	18	3.3	18	88	6	86	70	0	6	23	1.11
61749769--61749818	18	2.7	18	96	3	91	72	0	4	24	1.02
61749769--61749839	9	7.6	10	72	13	62	67	0	4	28	1.09
61750098--61750203	56	1.9	55	81	9	126	29	3	4	62	1.33
61750193--61750237	17	2.8	16	83	6	63	33	2	0	64	1.06
61754242--61754279	20	1.9	20	88	0	58	55	5	2	36	1.37
61757225--61757400	89	2.0	89	88	6	268	36	14	13	35	1.85
61758058--61758099	18	2.3	18	100	0	84	71	0	4	23	1.05
61758058--61758131	9	7.6	10	71	15	57	66	1	4	28	1.18
61759472--61759540	30	2.3	29	90	4	111	40	24	0	34	1.56
61759714--61759825	56	2.0	55	94	3	199	24	11	6	58	1.56
61759914--61759951	20	1.9	20	94	0	67	42	0	7	50	1.31
61767593--61767635	20	2.2	20	83	8	52	23	4	18	53	1.63
61782081--61782148	29	2.3	29	97	0	127	39	25	0	35	1.56
61782323--61782434	56	2.0	54	94	3	197	24	11	6	58	1.56
61782523--61782561	21	1.9	20	94	0	60	43	0	7	48	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61786260--61786310	27	1.9	26	88	11	77	47	3	5	43	1.46
61788063--61788230	85	2.0	85	96	0	309	36	15	12	35	1.85
61788595--61788767	89	2.0	89	85	1	240	36	20	9	32	1.85
61788873--61788933	19	3.2	19	88	6	88	72	0	6	21	1.07
61788882--61788933	10	5.3	10	76	4	61	73	0	3	23	1.00
61788882--61788953	9	7.6	9	77	11	63	69	0	4	26	1.06
61789217--61789323	57	1.9	56	81	9	128	28	3	4	63	1.31
61789313--61789361	19	2.7	18	78	9	64	36	2	0	61	1.08
61790943--61790967	9	2.8	9	100	0	50	40	0	0	60	0.97
61796906--61796945	18	2.2	18	86	8	55	67	12	0	20	1.22
61797769--61797827	26	2.3	26	100	0	118	25	20	6	47	1.74
61797783--61797827	15	3.3	15	70	23	53	22	22	6	48	1.73
61799770--61799796	12	2.2	12	100	0	54	85	0	14	0	0.61
61799766--61799798	16	2.1	16	94	0	57	84	0	15	0	0.61
61806913--61806958	17	2.7	18	77	12	53	34	0	10	54	1.36
61812184--61812237	27	2.0	27	100	0	108	37	0	18	44	1.50
61814622--61814673	26	2.1	26	85	7	72	46	5	0	48	1.26
61814721--61814788	25	2.8	24	86	4	91	33	2	0	63	1.10
61814698--61814852	35	4.4	34	69	14	91	31	4	1	61	1.27
61814721--61814791	24	2.9	24	87	4	97	33	2	0	63	1.09
61814711--61814845	7	19.7	7	67	20	56	32	3	2	61	1.26
61814785--61814853	28	2.5	28	83	4	86	31	4	4	59	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61814973--61815031	12	4.5	13	72	14	50	32	5	0	62	1.17
61817836--61817890	21	2.8	20	81	10	60	56	7	1	34	1.38
61817909--61817989	24	3.4	24	75	10	76	61	4	3	29	1.34
61818032--61818095	20	3.3	18	74	19	65	65	6	1	26	1.25
61818018--61818099	41	1.9	41	87	7	119	62	4	1	31	1.24
61818064--61818110	15	3.1	15	81	0	58	63	2	0	34	1.06
61818252--61818279	12	2.3	12	100	0	56	67	0	0	32	0.91
61818427--61818482	24	2.3	25	82	11	64	58	10	3	26	1.48
61822705--61822797	31	3.1	30	72	17	79	47	16	3	33	1.62
61825654--61825693	21	2.0	20	85	5	53	37	0	15	47	1.45
61828682--61828719	20	1.9	20	89	10	60	39	0	0	60	0.97
61828746--61828845	51	2.0	51	82	7	123	38	6	16	40	1.73
61829140--61829202	13	4.8	13	82	7	83	34	4	20	39	1.74
61829197--61829388	97	2.0	97	100	0	384	41	7	12	39	1.71
61829482--61829578	33	2.9	34	72	20	87	51	1	2	45	1.19
61830070--61830124	21	2.6	22	88	8	87	25	9	38	27	1.86
61830288--61830421	18	7.9	18	69	17	90	57	1	0	40	1.13
61830339--61830394	15	4.0	15	73	17	57	55	0	0	44	0.99
61830344--61830542	59	3.3	58	72	14	199	53	3	1	41	1.24
61830322--61830564	120	2.0	120	97	0	459	51	4	1	43	1.31
61830372--61830564	61	3.2	60	71	12	187	50	4	1	43	1.32
61833628--61833665	6	6.2	6	87	6	58	39	0	60	0	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61833628--61833663	18	2.0	18	100	0	72	38	0	61	0	0.96
61833633--61833674	18	2.3	18	87	0	57	40	0	59	0	0.97
61838009--61838040	7	4.6	7	96	0	55	71	3	12	12	1.25
61838918--61838965	15	3.1	16	83	16	57	70	2	0	27	0.98
61838909--61838979	11	6.5	11	76	12	58	66	2	1	29	1.15
61849229--61849276	15	3.1	16	83	16	57	70	2	0	27	0.98
61849220--61849290	11	6.5	11	76	12	58	66	2	1	29	1.15
61855200--61855283	37	2.2	39	85	4	109	32	21	10	35	1.88
61855719--61855758	18	2.2	18	90	0	62	30	7	27	35	1.84
61861423--61861448	13	2.0	13	100	0	52	69	0	0	30	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250