genome.fa.s9.2.7.7.80.10.50.1000.158.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  158  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50777286--50777622	130	2.6	129	83	2	424	37	12	18	31	1.89
50777999--50778125	63	2.0	63	96	0	236	17	25	17	39	1.91
50786934--50786998	33	2.0	33	84	6	87	33	29	18	18	1.95
50802943--50802987	22	2.0	22	82	4	54	44	6	0	48	1.29
50803585--50803610	13	2.0	13	100	0	52	38	0	30	30	1.58
50806198--50806290	49	1.9	49	95	2	170	44	2	16	37	1.60
50815840--50815864	5	5.0	5	100	0	50	0	0	40	60	0.97
50818486--50818617	27	4.9	27	85	8	173	34	22	24	18	1.96
50818487--50818617	54	2.4	54	94	1	228	34	22	24	18	1.96
50820210--50820291	26	3.2	26	96	0	155	36	26	6	30	1.81
50833550--50833597	17	2.8	17	75	12	53	41	14	0	43	1.45
50834054--50834117	32	2.0	32	96	0	119	40	17	17	25	1.90
50836724--50836935	40	5.3	40	83	5	277	23	20	28	27	1.99
50836728--50836935	80	2.6	80	92	0	337	23	21	28	26	1.99
50857280--50857334	20	2.8	20	80	5	58	41	12	12	32	1.81
50861132--50861164	14	2.5	14	90	9	52	48	0	12	39	1.40
50861750--50861830	34	2.4	34	80	0	99	33	4	22	39	1.75
50869604--50869714	27	4.2	26	89	5	159	36	23	24	15	1.93
50871131--50871201	24	3.0	24	95	0	124	25	38	1	35	1.65
50873276--50873311	19	1.9	18	88	5	54	58	0	5	36	1.22
50874178--50874257	38	2.1	38	88	0	115	42	6	17	33	1.74
50877529--50877576	21	2.4	19	83	10	60	22	10	2	64	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50878549--50878592	22	2.0	22	82	8	54	18	29	13	38	1.89
50887209--50887320	42	2.7	42	90	0	170	23	31	25	19	1.98
50893420--50893479	31	1.9	31	100	0	120	23	26	23	26	2.00
50896251--50896359	35	3.1	35	94	0	191	46	4	6	42	1.50
50896975--50897021	23	2.0	23	100	0	94	38	17	8	36	1.80
50899640--50899664	13	1.9	13	100	0	50	24	4	8	64	1.38
50906174--50906219	23	2.0	23	100	0	92	43	4	8	43	1.55
50910380--50910461	31	2.6	31	86	0	110	20	19	14	45	1.85
50923394--50923440	20	2.3	20	100	0	94	14	21	25	38	1.92
50931513--50931571	25	2.3	26	80	14	68	35	22	23	18	1.96
50934918--50935030	56	2.0	56	92	0	190	39	17	10	31	1.84
50939910--50940017	54	2.0	54	96	0	198	37	3	11	47	1.57
50941933--50941993	30	2.0	30	83	0	77	31	22	8	37	1.84
50945456--50945503	22	2.2	22	100	0	96	43	16	10	29	1.81
50948988--50949017	15	2.0	15	100	0	60	40	13	0	46	1.43
50971542--50971617	28	2.7	28	74	8	82	26	1	5	67	1.20
50972562--50972598	17	2.2	17	90	9	58	70	0	0	29	0.88
50972662--50972687	11	2.4	11	100	0	52	73	7	0	19	1.07
50977233--50977259	3	9.0	3	100	0	54	33	0	0	66	0.92
50988000--50988041	19	2.2	19	86	4	57	57	0	0	42	0.99
50988016--50988085	27	2.6	28	82	8	92	58	0	0	41	0.98
50988354--50988382	13	2.1	14	93	6	51	27	0	0	72	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50988968--50989035	35	1.9	35	84	0	91	35	7	11	45	1.69
50989948--50989977	15	1.9	16	93	6	53	83	3	6	6	0.90
50995133--50995192	30	2.0	30	100	0	120	30	13	6	50	1.67
51002952--51002985	15	2.3	15	90	5	52	70	0	5	23	1.09
51005609--51005676	18	3.7	18	76	3	64	61	1	2	33	1.20
51005596--51005680	37	2.3	37	91	0	134	62	2	2	32	1.21
51005634--51005676	17	2.7	15	76	13	50	62	0	2	34	1.08
51008662--51008696	16	2.1	16	89	5	52	22	0	2	74	0.95
51009876--51009927	5	9.6	5	84	12	50	19	0	3	76	0.93
51009893--51009933	18	2.2	19	91	4	66	26	0	0	73	0.84
51010765--51010816	16	3.1	16	73	15	52	28	3	5	61	1.37
51013532--51013766	118	2.0	118	94	0	407	29	31	17	22	1.96
51014544--51014652	41	2.6	42	85	5	143	25	11	31	31	1.92
51014764--51014801	8	4.9	8	90	9	53	76	0	0	23	0.79
51014768--51014812	8	6.4	7	90	10	58	77	0	0	22	0.76
51014759--51014807	15	3.5	15	84	15	61	77	0	0	22	0.77
51014780--51014812	10	3.2	11	87	12	52	78	0	0	21	0.75
51021914--51021959	5	8.6	5	86	9	56	21	0	2	76	0.90
51024201--51024252	26	2.0	26	92	0	86	28	34	21	15	1.94
51024213--51024363	72	2.1	71	91	2	241	30	29	16	23	1.96
51024282--51024505	104	2.2	104	92	3	371	31	31	19	18	1.95
51024834--51024897	30	2.2	29	81	10	76	29	28	6	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51024841--51024897	30	1.9	30	85	3	80	29	24	7	38	1.82
51029154--51029491	169	2.0	169	88	0	496	34	26	13	26	1.93
51030489--51030551	27	2.3	27	91	0	99	44	25	9	20	1.82
51037031--51037090	31	1.9	31	86	0	84	55	11	5	28	1.57
51041249--51041286	18	2.2	18	86	9	53	21	5	21	52	1.66
51047073--51047184	39	2.8	39	91	1	170	24	24	29	22	1.99
51048661--51048698	19	2.0	19	100	0	76	36	21	5	36	1.76
51049512--51049785	121	2.3	119	87	3	383	46	16	11	26	1.80
51055453--51055486	3	11.7	3	87	6	52	64	0	0	35	0.94
51055514--51055555	17	2.4	17	84	15	59	64	0	7	28	1.20
51055627--51055667	3	14.0	3	82	14	50	63	0	4	31	1.15
51058536--51058574	21	1.9	21	84	5	53	35	2	17	43	1.63
51058872--51058914	21	2.0	21	86	8	61	30	16	25	27	1.97
51059168--51059210	22	2.0	22	86	4	61	30	2	23	44	1.66
51059208--51059470	122	2.1	124	88	4	381	38	17	15	27	1.91
51062831--51062919	27	3.3	27	75	9	76	38	17	21	22	1.94
51063362--51063446	27	3.2	26	85	6	107	34	11	17	36	1.86
51063652--51063687	18	2.0	18	100	0	72	33	11	16	38	1.84
51064785--51064848	24	2.7	24	72	13	60	29	29	3	37	1.73
51065924--51065954	14	2.2	14	94	0	53	61	12	0	25	1.32
51066870--51066915	18	2.5	19	75	10	51	63	4	0	32	1.14
51067112--51067156	21	2.1	21	91	0	72	33	4	26	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51081193--51081222	15	2.0	15	100	0	60	20	0	26	53	1.46
51081294--51081370	17	4.7	16	71	16	59	35	3	1	59	1.24
51089587--51089611	13	1.9	13	100	0	50	40	20	8	32	1.81
51090313--51090350	15	2.4	17	82	13	53	47	7	0	44	1.32
51090757--51090863	52	2.0	53	82	7	128	49	0	1	48	1.12
51090818--51090883	30	2.2	30	91	8	107	51	0	0	48	1.00
51095495--51095604	33	3.3	33	77	6	80	24	23	18	33	1.97
51098588--51098713	46	2.7	46	92	0	198	29	29	20	20	1.98
51103507--51103571	22	2.8	23	76	17	62	50	7	3	38	1.47
51103616--51103661	21	2.1	23	84	8	60	50	6	4	39	1.48
51103928--51103959	12	2.7	12	95	0	55	75	21	0	3	0.95
51104003--51104040	8	4.9	8	83	6	51	55	7	0	36	1.29
51117482--51117546	22	2.8	23	76	17	62	50	7	3	38	1.47
51119657--51120230	73	7.5	74	84	7	650	32	20	17	28	1.96
51119657--51120230	227	2.5	225	84	6	699	32	20	17	28	1.96
51120086--51120230	75	1.9	75	87	5	213	32	19	17	31	1.95
51119657--51120243	151	3.8	152	83	7	638	33	20	17	28	1.95
51121120--51121148	12	2.4	12	100	0	58	6	13	20	58	1.58
51124040--51124069	11	2.7	11	89	0	51	33	16	26	23	1.96
51128610--51128696	33	2.6	34	77	18	92	60	1	0	37	1.04
51131288--51131380	30	3.0	31	76	3	89	37	5	2	54	1.35
51131816--51131858	9	4.8	9	82	0	59	25	6	20	46	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51133221--51133254	8	4.0	8	92	7	50	38	2	0	58	1.13
51134615--51134657	22	2.0	21	90	4	68	74	0	2	23	0.93
51135766--51135815	22	2.3	22	79	6	57	70	8	12	10	1.35
51136453--51136481	4	7.2	4	100	0	58	24	0	0	75	0.80
51136651--51136697	25	2.0	24	91	8	78	36	2	0	61	1.08
51138844--51138882	14	2.7	15	88	11	64	56	0	0	43	0.99
51138849--51138885	12	2.9	13	85	14	51	59	0	0	40	0.97
51138846--51138906	30	2.1	31	81	9	74	55	1	0	42	1.09
51142814--51142852	5	8.2	5	86	8	55	87	0	0	12	0.55
51142814--51142852	9	4.1	9	87	12	60	87	0	0	12	0.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250