genome.fa.s9.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  136  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43867907--43868231	54	6.0	54	78	7	248	31	9	19	39	1.83
43868209--43868312	27	3.9	27	85	0	136	41	7	22	28	1.81
43868145--43868339	54	3.6	54	79	1	194	34	8	23	34	1.84
43875365--43875406	18	2.2	19	83	8	50	14	7	7	71	1.29
43877937--43878229	146	2.0	146	99	0	577	40	9	17	32	1.81
43881677--43881710	16	2.1	16	94	0	59	29	23	23	23	1.99
43884600--43884640	20	2.0	20	90	0	64	36	24	29	9	1.87
43890434--43890653	40	5.6	40	82	5	259	25	27	23	24	2.00
43893331--43893394	27	2.4	26	84	7	76	20	28	18	32	1.96
43893531--43893582	24	2.2	23	83	10	61	21	21	21	36	1.95
43902869--43903043	48	3.6	48	77	6	183	29	20	26	22	1.99
43902864--43903040	96	1.8	96	88	0	273	29	20	26	23	1.99
43903376--43903436	16	3.2	21	61	29	55	27	16	8	47	1.75
43903380--43903438	19	3.3	19	64	22	54	27	18	10	44	1.82
43903369--43903440	35	2.0	36	97	2	137	25	16	8	50	1.73
43904114--43904153	19	2.1	19	90	0	62	22	27	40	10	1.86
43905469--43905514	18	2.6	18	100	0	92	34	13	26	26	1.92
43905482--43905521	18	2.2	18	86	0	53	40	12	20	27	1.88
43906529--43906570	22	1.9	22	95	0	75	35	7	9	47	1.64
43908780--43908812	13	2.3	15	90	10	52	54	6	3	36	1.41
43912425--43912454	15	2.0	15	93	0	51	23	13	6	56	1.60
43913167--43913230	29	2.2	30	85	2	85	28	18	23	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43920679--43920797	58	2.1	58	84	6	152	33	21	10	34	1.88
43927579--43927629	6	8.2	6	75	16	50	60	5	0	33	1.21
43927614--43927648	17	2.0	18	88	5	54	51	0	5	42	1.25
43927864--43927891	5	5.6	5	100	0	56	21	0	0	78	0.75
43928249--43928289	21	2.0	21	85	0	55	65	2	2	29	1.18
43932212--43932266	28	2.0	28	85	0	74	27	23	18	30	1.97
43951392--43951425	10	3.3	10	84	8	50	58	14	20	5	1.57
43951394--43951433	21	1.9	21	89	0	62	57	15	22	5	1.57
43957228--43957279	21	2.3	23	81	15	65	61	5	1	30	1.30
43957233--43957277	22	2.1	22	88	8	67	60	6	0	33	1.23
43967412--43967557	73	2.0	74	93	1	249	50	15	12	21	1.76
43967884--43967950	1	67.0	1	75	0	62	88	10	1	0	0.59
43967884--43967950	16	4.3	15	82	16	82	88	10	1	0	0.59
43967886--43967950	20	3.2	19	81	18	78	87	10	1	0	0.61
43967886--43967950	25	2.4	27	85	10	89	87	10	1	0	0.61
43970345--43970388	22	1.9	24	81	9	56	45	0	4	50	1.22
43970500--43970544	19	2.4	19	81	3	56	26	2	4	66	1.22
43971239--43971285	24	2.0	24	87	8	69	42	0	0	57	0.98
43971310--43971368	30	2.0	30	96	0	109	40	6	25	27	1.80
43974023--43974055	7	4.7	7	92	0	57	27	3	12	57	1.49
43974521--43974617	30	3.3	30	80	1	115	28	40	19	11	1.86
43974954--43975015	21	3.0	21	74	9	63	30	41	19	8	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43975134--43975259	54	2.3	55	82	8	141	43	2	6	47	1.41
43978102--43978471	125	3.0	126	92	1	602	27	17	16	38	1.91
43981367--43981443	38	2.0	38	94	0	136	19	28	11	40	1.87
43981375--43981442	22	3.4	22	64	29	60	19	29	8	42	1.81
43989624--43989665	20	2.1	20	100	0	84	26	40	23	9	1.85
43992858--43992912	20	2.8	19	78	8	56	70	3	1	23	1.12
43992858--43992906	20	2.5	20	80	12	64	75	2	2	20	1.00
44000687--44000795	37	2.9	37	88	0	155	29	30	16	23	1.96
44000937--44001273	48	7.0	48	95	0	584	29	28	6	35	1.83
44006558--44006600	13	3.5	13	78	18	56	48	11	0	39	1.40
44006558--44006609	23	2.3	23	96	0	95	48	11	0	40	1.40
44006558--44006622	23	2.8	23	86	4	60	50	10	0	38	1.37
44007299--44007341	22	2.0	22	85	0	59	53	2	6	37	1.41
44007355--44007392	19	2.1	18	85	9	51	23	10	7	57	1.58
44007591--44007650	30	2.0	30	90	0	93	36	8	18	36	1.81
44013014--44013161	56	2.6	56	93	2	253	34	24	13	27	1.93
44015516--44015559	21	2.1	21	95	0	79	47	2	20	29	1.62
44017821--44018305	241	2.0	241	97	0	925	33	14	20	31	1.93
44024383--44024413	15	2.1	15	93	0	53	54	16	16	12	1.71
44024619--44024691	36	2.0	36	89	5	112	26	20	16	36	1.93
44025800--44025947	74	2.0	74	100	0	296	24	14	25	35	1.94
44028177--44028240	28	2.3	27	76	5	74	18	21	26	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44028201--44028263	33	1.9	33	86	0	90	26	22	25	25	2.00
44029423--44029448	12	2.2	12	100	0	52	42	7	7	42	1.62
44029503--44029629	68	1.9	67	85	9	177	49	3	3	42	1.39
44031806--44031903	48	2.0	48	100	0	196	30	12	6	51	1.64
44034424--44034611	40	4.6	41	79	6	177	32	25	13	28	1.94
44035792--44035858	35	1.9	35	93	0	116	25	10	22	41	1.85
44041027--44041052	12	2.2	12	100	0	52	7	23	42	26	1.81
44041156--44041228	32	2.3	32	90	0	119	27	32	23	16	1.96
44042100--44042245	40	3.6	41	80	8	174	29	27	16	26	1.97
44043438--44043664	90	2.5	90	87	2	303	30	11	11	47	1.74
44043784--44043880	48	2.0	48	82	7	117	30	11	9	48	1.70
44052389--44052429	21	2.0	21	100	0	82	29	19	26	24	1.98
44057556--44057603	18	2.7	18	100	0	96	41	6	18	33	1.76
44060501--44060570	20	3.6	19	84	9	79	57	7	0	35	1.26
44060501--44060585	19	4.2	19	79	14	82	55	5	0	38	1.24
44060550--44060598	25	2.0	25	88	4	73	55	2	0	42	1.11
44069076--44069108	16	2.1	16	100	0	66	42	12	12	33	1.79
44082346--44082414	31	2.3	31	84	2	86	30	23	14	31	1.94
44082606--44082653	24	2.0	25	83	4	62	25	20	20	33	1.97
44082787--44082835	25	2.0	25	87	0	71	26	16	22	34	1.95
44090743--44090947	27	7.6	27	85	3	205	29	29	15	26	1.96
44090743--44090946	54	3.8	54	84	3	257	29	29	15	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44090797--44090946	81	1.9	81	88	0	228	27	28	16	27	1.97
44098899--44099103	27	7.6	27	85	3	205	29	29	15	26	1.96
44098899--44099102	54	3.8	54	84	3	257	29	29	15	25	1.96
44098953--44099102	81	1.9	81	88	0	228	27	28	16	27	1.97
44109381--44109763	47	8.1	47	91	2	532	31	11	29	27	1.91
44109381--44109763	141	2.7	141	89	1	586	31	11	29	27	1.91
44109737--44109901	46	3.6	46	94	0	267	35	10	30	23	1.88
44116130--44116208	37	2.1	37	88	4	115	25	30	18	25	1.98
44116327--44117096	47	16.4	47	96	0	1353	29	29	8	32	1.87
44137968--44138008	14	2.6	17	82	17	54	48	7	14	29	1.71
44153050--44153120	28	2.5	28	88	0	97	29	11	28	30	1.91
44153067--44153128	28	2.2	28	85	0	88	37	8	24	30	1.84
44160966--44161036	28	2.9	23	77	18	79	45	33	4	16	1.67
44160980--44161063	28	3.0	28	89	1	123	46	29	3	20	1.67
44163289--44163360	35	2.1	35	100	0	144	61	11	8	19	1.54
44172369--44172465	40	2.4	40	86	3	124	20	15	28	35	1.93
44172446--44172516	28	2.5	28	86	0	106	22	12	32	32	1.92
44175208--44175567	27	13.3	27	78	7	223	36	19	9	33	1.85
44175208--44175342	55	2.5	55	85	7	193	39	20	8	31	1.82
44175616--44175712	27	3.6	27	70	10	72	38	18	20	22	1.94
44176336--44176383	25	1.9	25	95	0	87	27	18	20	33	1.96
44176410--44176485	20	3.9	20	83	8	95	35	10	21	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44176430--44176468	11	3.8	10	86	13	53	33	12	23	30	1.92
44176535--44176656	25	4.8	26	85	2	160	27	22	22	27	1.99
44176535--44176656	51	2.4	52	90	4	196	27	22	22	27	1.99
44176801--44176892	42	2.2	42	96	0	166	27	11	21	39	1.89
44183364--44183470	40	2.7	40	85	4	137	20	15	28	34	1.94
44183453--44183538	28	3.1	28	82	0	109	23	12	32	31	1.92
44188440--44188496	24	2.3	25	88	8	82	17	19	19	43	1.88
44188444--44188507	24	2.7	24	82	4	67	18	23	17	40	1.91
44196321--44196379	18	3.3	18	76	9	66	37	18	20	23	1.94
44196637--44196686	23	2.2	23	86	13	68	42	20	14	24	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250