genome.fa.s9.2.7.7.80.10.50.1000.184.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  184  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58061616--58061645	14	2.1	14	93	0	51	76	6	0	16	0.99
58064571--58064608	16	2.4	16	86	4	51	5	7	21	65	1.38
58069501--58069561	31	2.0	31	86	0	86	34	11	6	47	1.66
58075868--58075893	12	2.2	12	100	0	52	53	0	15	30	1.42
58076141--58076181	6	6.8	6	86	8	57	68	0	2	29	1.03
58076141--58076181	13	3.4	12	83	9	57	68	0	2	29	1.03
58077402--58077823	154	2.7	156	91	4	654	31	20	18	29	1.96
58079585--58079641	18	3.2	18	80	5	71	26	35	8	29	1.87
58079589--58079649	18	3.4	17	77	8	68	26	36	8	29	1.85
58091390--58091445	26	2.2	26	100	0	112	35	26	7	30	1.83
58096804--58097438	131	4.8	131	75	4	377	27	18	18	35	1.94
58102041--58102214	87	2.0	87	95	0	312	40	24	21	13	1.90
58108116--58108149	3	11.3	3	100	0	68	67	0	32	0	0.91
58112335--58112699	131	2.8	131	77	6	369	27	18	18	34	1.95
58112505--58112953	131	3.4	128	75	7	352	28	18	18	35	1.94
58114018--58114121	44	2.4	45	81	12	119	30	18	22	28	1.97
58114086--58114782	88	7.9	88	85	1	846	22	23	20	33	1.97
58114216--58114785	44	13.0	44	67	14	327	21	24	20	33	1.97
58114101--58114785	175	3.9	175	88	2	937	22	23	20	33	1.97
58114086--58114785	263	2.7	262	85	2	918	22	23	20	33	1.97
58126475--58126502	5	5.6	5	100	0	56	82	0	0	17	0.68
58126809--58126860	26	2.0	26	84	0	68	51	1	15	30	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58126842--58126895	27	2.0	26	85	3	72	57	3	11	27	1.50
58126932--58126978	19	2.6	18	76	6	51	65	2	2	29	1.15
58127010--58127100	3	30.0	3	74	10	78	59	2	7	30	1.38
58129843--58129908	4	17.0	4	81	6	55	16	4	4	74	1.16
58129860--58129903	19	2.3	19	88	0	61	20	6	0	72	1.07
58129958--58129999	18	2.3	18	80	8	50	23	4	0	71	1.05
58129974--58130013	21	1.9	21	85	10	55	22	5	2	70	1.19
58133770--58133804	18	1.9	18	88	0	52	40	11	17	31	1.85
58133777--58133820	18	2.5	17	85	7	52	38	15	13	31	1.87
58136705--58136903	41	4.9	41	98	1	373	28	21	23	26	1.99
58137107--58137170	32	2.0	31	90	3	101	28	9	23	39	1.86
58144380--58144616	81	2.9	82	96	1	431	29	21	22	27	1.99
58144380--58144616	41	5.8	41	96	1	431	29	21	22	27	1.99
58150071--58150256	44	4.0	44	76	9	156	35	15	19	30	1.92
58150166--58150622	145	3.2	145	90	1	711	31	17	20	30	1.96
58150589--58150708	45	2.7	45	85	1	161	29	17	24	29	1.97
58152223--58152293	4	18.0	4	79	2	72	19	5	2	71	1.18
58152247--58152284	19	2.0	20	89	5	60	21	7	0	71	1.11
58152344--58152385	18	2.3	18	80	8	50	23	4	0	71	1.05
58158280--58158329	24	2.0	24	84	3	64	22	4	6	68	1.29
58168883--58168935	18	2.9	18	80	0	70	30	28	16	24	1.97
58173898--58174521	176	3.5	176	81	6	724	30	18	24	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58175959--58176008	25	2.0	25	84	7	66	22	4	4	70	1.21
58179875--58179915	21	2.0	21	100	0	82	24	4	39	31	1.76
58189328--58189413	43	2.0	45	81	9	106	32	13	29	24	1.94
58189222--58189844	176	3.5	175	80	9	687	30	18	23	27	1.97
58191272--58191321	25	2.0	25	84	7	66	22	4	4	70	1.21
58191468--58191529	17	3.7	18	71	18	53	38	8	1	51	1.41
58196501--58196526	12	2.2	12	100	0	52	7	26	46	19	1.77
58201074--58201295	48	4.6	48	79	4	241	27	20	29	22	1.98
58207787--58207844	12	5.1	12	78	17	52	32	1	5	60	1.29
58207814--58207854	12	3.4	12	84	15	50	26	0	9	63	1.25
58209153--58209177	13	1.9	13	100	0	50	84	0	16	0	0.63
58210650--58210683	16	2.1	16	88	0	50	41	0	2	55	1.15
58212101--58212149	23	2.1	23	81	7	55	36	6	0	57	1.24
58213169--58213198	11	2.7	11	94	0	51	66	16	16	0	1.25
58214222--58214266	18	2.7	16	83	16	56	33	2	0	64	1.06
58220822--58220861	20	2.0	20	95	0	71	42	15	12	30	1.83
58221268--58221355	44	2.0	44	84	4	115	29	11	28	30	1.92
58221453--58221777	42	7.5	43	68	13	173	30	22	20	26	1.98
58221355--58221833	131	3.7	131	89	0	715	30	20	22	26	1.98
58221840--58222009	88	1.9	88	87	0	250	34	20	21	23	1.96
58222114--58222714	44	13.5	44	67	10	175	31	18	22	28	1.97
58222286--58222479	89	2.2	90	82	2	212	35	18	20	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58222375--58222662	133	2.2	134	82	1	346	28	18	24	29	1.98
58222375--58222698	133	2.4	133	80	4	330	29	17	24	29	1.97
58224808--58224836	14	2.0	15	93	6	51	24	0	0	75	0.80
58226224--58226373	53	2.8	53	92	1	255	36	15	12	36	1.84
58228191--58228218	14	2.0	14	100	0	56	50	14	7	28	1.69
58229538--58229702	43	3.9	43	77	9	151	33	25	14	26	1.94
58234552--58234576	10	2.5	10	100	0	50	48	8	16	28	1.74
58236763--58236842	41	2.0	41	94	0	142	16	15	30	38	1.89
58238886--58238917	15	2.1	15	100	0	64	31	15	34	18	1.93
58246873--58246923	20	2.6	21	78	12	63	47	7	11	33	1.69
58252105--58252152	22	2.2	22	82	14	55	68	2	8	20	1.26
58255094--58255196	27	3.8	28	80	12	99	17	22	21	38	1.93
58255094--58255205	54	2.1	54	83	3	136	16	22	22	39	1.92
58256186--58256210	9	2.8	9	100	0	50	92	0	8	0	0.40
58262955--58263060	27	3.9	27	80	7	117	16	23	21	38	1.92
58269133--58269329	55	3.6	53	79	6	216	22	23	18	35	1.96
58269522--58269605	44	1.9	44	83	9	109	26	22	11	39	1.89
58278433--58278534	37	2.8	37	95	0	177	26	30	18	24	1.98
58278653--58279162	49	10.7	49	91	3	801	29	29	7	33	1.85
58278653--58279162	96	5.3	96	93	1	844	29	29	7	33	1.85
58281009--58281128	56	2.1	56	98	0	231	22	23	9	45	1.81
58284948--58284995	24	2.0	24	95	0	87	39	33	10	16	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58286177--58286229	27	2.0	27	82	14	65	33	16	15	33	1.90
58286348--58286381	17	1.9	17	88	5	50	14	44	29	11	1.81
58299145--58299265	61	2.0	61	88	3	181	26	28	17	27	1.97
58323271--58323308	19	2.0	20	84	5	51	23	0	2	73	0.95
58326334--58326393	27	2.2	26	80	8	66	40	21	10	28	1.85
58326372--58326463	27	3.4	27	89	0	139	28	22	7	41	1.81
58326495--58326593	27	3.7	27	82	4	128	39	23	9	28	1.85
58326495--58326606	54	2.1	54	83	3	136	40	21	8	29	1.84
58326515--58326675	54	2.9	54	77	4	135	39	18	9	32	1.82
58326596--58326681	27	3.1	27	77	14	95	38	13	9	38	1.78
58327609--58327703	25	3.8	25	80	8	113	26	25	22	26	2.00
58327610--58327730	25	4.9	25	78	12	92	27	23	22	26	2.00
58327851--58327942	42	2.2	42	98	0	175	31	15	20	32	1.94
58327966--58328049	31	2.7	31	88	1	134	27	17	26	28	1.98
58339757--58340245	258	1.9	258	96	0	897	40	18	14	26	1.89
58351152--58351193	17	2.5	17	88	0	57	23	4	7	64	1.38
58354800--58354830	7	4.4	7	95	0	53	67	0	0	32	0.91
58356752--58356854	37	2.8	37	92	0	170	25	32	19	23	1.98
58356995--58357133	48	2.9	48	97	0	260	30	29	6	33	1.83
58360483--58360669	40	4.7	40	95	0	329	25	31	22	20	1.98
58361945--58362048	37	2.8	37	92	1	172	25	31	20	23	1.98
58362189--58362327	48	2.9	48	97	0	260	30	29	6	33	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58372659--58372715	17	3.5	15	84	15	53	38	10	15	35	1.82
58372659--58372737	36	2.1	38	90	9	126	37	10	16	35	1.82
58372659--58372737	19	4.2	19	90	9	126	37	10	16	35	1.82
58377916--58377963	7	7.0	7	77	13	55	83	0	14	2	0.74
58377916--58377964	21	2.4	20	90	10	73	81	0	14	4	0.83
58377917--58377962	13	3.6	12	85	5	56	84	0	13	2	0.71
58378966--58379597	44	14.4	44	69	13	302	29	14	26	29	1.95
58378949--58379597	176	3.7	176	89	1	926	29	14	26	29	1.95
58379570--58379722	44	3.4	44	67	15	116	29	15	26	28	1.96
58379790--58379989	45	4.5	45	79	2	188	32	14	27	26	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250