genome.fa.s9.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  107  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34478642--34478767	58	2.2	57	82	14	154	53	3	1	41	1.29
34483171--34483214	20	2.1	21	95	4	81	27	6	13	52	1.66
34485084--34485211	47	2.7	47	87	2	177	23	14	28	33	1.94
34497460--34497522	28	2.2	28	91	0	99	31	30	6	31	1.83
34499578--34499623	23	2.0	23	84	12	60	45	10	6	36	1.65
34499585--34499629	23	2.0	23	82	8	56	40	13	8	37	1.76
34505298--34505360	28	2.2	28	88	0	90	33	30	4	31	1.78
34509566--34509628	18	3.7	18	73	16	53	55	0	0	44	0.99
34509575--34509639	30	2.2	29	83	8	78	55	1	0	43	1.09
34509575--34509653	30	2.7	29	79	11	72	54	1	0	44	1.08
34509575--34509660	28	3.0	27	76	15	68	54	1	0	44	1.07
34509657--34509719	28	2.3	27	81	8	72	49	0	6	44	1.28
34509675--34509730	13	4.2	13	79	6	51	53	0	3	42	1.18
34510123--34510200	31	2.6	31	79	4	88	35	8	14	41	1.77
34512651--34512710	30	2.0	30	90	0	93	28	10	23	38	1.87
34515413--34516745	671	2.0	673	85	1	1814	29	15	19	35	1.93
34517877--34518045	41	4.1	40	81	6	169	33	21	23	22	1.98
34518090--34518221	53	2.5	54	92	2	230	45	30	5	18	1.72
34518328--34518380	14	3.7	14	87	2	70	39	43	1	15	1.57
34518390--34518472	14	5.8	14	75	9	78	50	21	2	25	1.61
34518390--34518472	29	2.9	28	85	3	94	50	21	2	25	1.61
34518412--34518479	14	4.8	14	75	10	57	52	20	0	26	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34518518--34518560	21	2.0	21	90	0	68	23	2	30	44	1.66
34518971--34519057	8	11.2	8	79	11	65	70	1	0	28	0.95
34518946--34519053	16	6.7	16	78	11	87	68	1	0	29	1.00
34518970--34519057	23	3.8	23	86	4	124	70	1	0	28	0.95
34518950--34519057	47	2.2	48	87	8	148	68	1	0	29	1.00
34519158--34519196	18	2.2	17	86	4	51	79	0	2	17	0.84
34523452--34523499	20	2.4	21	82	10	64	22	2	6	68	1.23
34523618--34523726	43	2.5	43	96	0	200	22	21	30	26	1.98
34524051--34524196	52	2.8	52	84	6	188	30	9	19	41	1.83
34524413--34524474	28	2.2	28	85	0	79	33	19	14	32	1.92
34527033--34527196	23	7.1	23	88	2	222	29	26	19	25	1.99
34531521--34531789	46	5.7	46	76	12	210	27	17	30	24	1.97
34531776--34531851	38	2.0	38	94	0	134	27	14	34	23	1.94
34536738--34536804	20	3.3	20	89	0	107	37	10	19	32	1.86
34536854--34536974	24	5.0	24	90	4	181	29	19	21	28	1.98
34544751--34544798	25	1.9	25	87	8	71	31	25	16	27	1.97
34544835--34544901	20	3.3	20	91	0	107	32	11	22	32	1.90
34544951--34545033	24	3.4	24	96	3	148	32	19	21	26	1.97
34544951--34545027	25	3.1	25	96	3	147	33	19	19	27	1.96
34548911--34549093	40	4.6	40	81	8	187	24	22	27	25	2.00
34548911--34549067	79	2.0	80	83	6	203	24	22	28	24	1.99
34548964--34549128	79	2.1	79	80	6	183	26	20	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34553730--34553901	93	1.8	93	96	0	317	27	29	21	20	1.98
34553723--34553898	46	3.8	46	79	12	216	28	29	21	20	1.98
34555874--34555898	12	2.1	12	100	0	50	24	40	16	20	1.91
34561263--34561437	45	3.8	46	79	13	216	29	29	20	20	1.98
34561270--34561440	93	1.8	92	96	1	315	28	29	21	21	1.98
34568826--34568997	93	1.8	93	94	0	308	27	28	22	21	1.99
34568819--34568994	46	3.8	46	77	12	198	28	28	21	21	1.98
34568868--34569006	47	3.0	46	73	16	135	29	28	19	23	1.98
34573071--34573113	22	1.9	23	85	4	61	34	2	16	46	1.60
34582644--34582826	79	2.3	81	83	7	223	24	22	28	24	2.00
34582645--34582828	40	4.6	40	83	9	207	23	22	28	24	1.99
34582697--34582861	79	2.1	79	83	6	201	25	21	28	24	1.99
34595632--34595664	13	2.6	13	95	4	59	45	21	0	33	1.52
34597328--34597438	44	2.6	43	81	7	118	22	18	23	35	1.96
34597333--34597463	42	3.0	42	76	14	126	22	17	24	35	1.95
34610898--34611055	86	1.8	85	82	6	203	30	21	17	30	1.96
34615630--34615667	20	1.9	20	84	10	51	42	13	23	21	1.88
34617549--34617774	46	4.9	46	91	2	330	38	15	24	21	1.92
34617549--34617774	91	2.5	92	89	2	330	38	15	24	21	1.92
34620865--34620902	20	1.9	20	84	10	51	42	13	23	21	1.88
34622795--34623021	46	5.0	46	90	2	314	39	15	23	21	1.92
34622795--34623026	91	2.5	92	87	2	315	38	15	23	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34622796--34623044	137	1.8	136	79	6	288	40	15	22	21	1.91
34627159--34627189	12	2.7	11	90	9	53	80	0	0	19	0.71
34629855--34629943	29	3.1	29	93	1	144	30	29	13	26	1.94
34631630--34631661	8	4.0	8	95	0	55	3	25	21	50	1.64
34635443--34635579	60	2.3	59	82	8	152	26	24	18	29	1.98
34636935--34636988	28	1.9	28	85	7	74	66	3	20	9	1.35
34637899--34637927	15	1.9	15	100	0	58	58	0	0	41	0.98
34641507--34641670	40	4.1	40	88	0	247	25	17	23	34	1.96
34651743--34651836	48	2.0	48	97	0	179	36	19	12	31	1.89
34653238--34653294	18	3.4	17	75	20	57	68	0	3	28	1.06
34654308--34654386	31	2.5	31	95	0	140	27	25	17	29	1.98
34654595--34654676	24	3.4	24	86	5	94	25	21	24	28	1.99
34655573--34655806	27	8.6	27	79	5	177	30	8	20	39	1.84
34655680--34655839	54	3.0	54	82	3	180	30	10	21	37	1.88
34655657--34655806	81	1.9	81	85	5	214	28	8	22	40	1.83
34655681--34655825	27	5.4	27	80	7	125	28	8	23	38	1.85
34655656--34655839	81	2.3	81	81	7	205	29	9	21	39	1.86
34655677--34655846	27	6.3	26	77	11	121	30	10	22	36	1.88
34655842--34656002	27	6.0	27	89	0	205	42	6	19	31	1.76
34655838--34656010	54	3.2	54	87	0	229	42	6	20	30	1.78
34659202--34659241	20	2.1	19	95	4	71	27	17	0	55	1.43
34663359--34663509	40	3.8	39	86	4	196	23	24	29	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34671411--34671510	39	2.5	40	83	1	121	25	25	27	23	2.00
34671411--34671561	40	3.8	39	81	4	160	23	23	27	25	2.00
34671411--34671561	79	1.9	79	80	9	173	23	23	27	25	2.00
34707555--34707599	20	2.3	19	81	11	54	35	13	4	46	1.63
34713383--34713437	28	1.9	29	82	10	69	47	20	1	30	1.60
34714250--34714307	29	2.0	29	100	0	116	31	17	10	41	1.83
34719317--34719536	79	2.8	79	80	6	205	26	27	20	24	1.99
34719354--34719536	40	4.6	40	80	8	187	27	27	20	24	1.99
34721228--34721474	80	3.1	81	77	8	218	40	19	10	30	1.85
34721228--34721621	27	14.7	27	79	6	318	39	20	10	30	1.85
34721573--34721634	27	2.3	27	91	0	106	41	12	8	37	1.73
34724454--34724517	28	2.3	28	91	0	101	17	17	37	28	1.92
34724834--34725305	27	17.6	27	80	5	447	39	19	9	31	1.83
34725300--34725361	27	2.3	27	83	5	72	35	24	16	24	1.95
34725323--34725378	27	2.1	27	82	0	67	35	25	17	21	1.95
34727327--34727412	28	3.1	28	91	0	136	19	15	38	26	1.91
34727732--34728097	27	13.7	27	80	3	274	40	20	8	30	1.82
34727732--34728091	54	6.7	54	79	5	329	40	19	8	30	1.82
34727732--34728097	80	4.6	80	77	6	330	40	20	8	30	1.82
34727732--34728069	161	2.1	161	83	3	414	40	20	8	30	1.82
34727971--34728137	27	6.2	27	78	4	115	39	19	10	29	1.86
34727731--34728122	134	2.9	133	78	7	402	40	20	9	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34727798--34728114	107	3.0	108	79	3	266	40	19	8	30	1.82
34728555--34728670	27	4.3	26	86	5	124	37	21	21	19	1.95
34728555--34728670	54	2.2	53	85	6	153	37	21	21	19	1.95
34728772--34728860	26	3.4	26	95	1	151	29	11	24	34	1.90
34729781--34729812	17	1.9	16	93	6	55	68	0	25	6	1.12
34732235--34732349	27	4.3	26	81	5	95	36	20	21	20	1.95
34733702--34733936	50	4.7	51	78	8	180	26	18	25	29	1.98
34733698--34733885	101	1.9	101	86	2	270	26	19	25	28	1.98
34735974--34736006	17	2.0	17	94	5	59	63	0	24	12	1.28
34743369--34743416	22	2.2	22	92	3	80	43	0	6	50	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250