genome.fa.s9.2.7.7.80.10.50.1000.205.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  205  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63845886--63845919	16	2.1	17	88	5	52	32	0	32	35	1.58
63846171--63846211	19	2.2	19	100	0	82	21	14	24	39	1.91
63846178--63846224	19	2.5	19	89	0	67	21	19	23	36	1.95
63857932--63857965	17	2.0	17	94	0	59	44	50	0	5	1.26
63862561--63862594	17	2.0	17	94	0	59	44	50	0	5	1.26
63863097--63863145	26	1.9	26	83	4	64	40	0	2	57	1.10
63864747--63864916	91	1.9	91	91	0	277	40	9	15	35	1.79
63871736--63871781	21	2.1	22	84	8	58	26	4	4	65	1.30
63880490--63880548	30	2.0	30	89	0	91	30	22	3	44	1.69
63881797--63881827	14	2.2	14	100	0	62	45	12	6	35	1.68
63888069--63888153	40	2.2	40	86	2	118	17	21	31	29	1.96
63890048--63890174	45	2.9	45	85	8	156	24	29	22	23	1.99
63890342--63890537	43	4.6	43	93	1	304	34	20	14	31	1.92
63892375--63892411	20	1.9	18	89	10	56	35	21	0	43	1.53
63894324--63894392	5	13.8	5	74	10	52	20	2	4	72	1.15
63894324--63894388	30	2.2	30	83	5	78	20	3	4	72	1.16
63904351--63904395	21	2.1	21	91	0	72	31	17	20	31	1.96
63906563--63906607	18	2.4	18	82	10	56	0	33	0	66	0.92
63910275--63910497	39	5.7	39	91	2	324	29	28	22	19	1.98
63912508--63912561	26	2.1	26	100	0	108	18	3	31	46	1.67
63930168--63930204	18	2.0	20	89	10	60	32	0	0	67	0.91
63930658--63930702	21	2.1	22	83	4	56	68	6	2	22	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63930871--63930918	22	2.2	22	84	0	60	41	4	0	54	1.20
63936328--63936359	3	10.7	3	100	0	64	0	65	0	34	0.93
63950613--63950657	18	2.6	17	78	3	54	48	2	2	46	1.26
63950676--63950726	8	5.9	8	75	24	50	50	1	0	47	1.12
63950676--63950726	18	2.8	18	80	11	68	50	1	0	47	1.12
63953206--63953239	10	3.4	10	87	0	50	52	2	0	44	1.16
63957533--63957573	20	2.0	20	100	0	82	43	9	29	17	1.80
63979732--63979768	18	2.0	19	89	5	58	43	5	0	51	1.24
63988983--63989287	46	6.6	46	90	0	450	41	13	23	21	1.89
63990679--63990731	13	4.1	13	82	0	52	28	0	1	69	0.99
63990690--63990726	8	4.8	8	90	3	58	32	0	2	64	1.07
63990783--63990832	17	2.8	17	84	6	64	34	18	6	42	1.74
63992430--63992464	13	2.6	13	90	4	52	54	0	20	25	1.45
64001013--64001165	77	2.0	78	90	3	247	49	6	11	33	1.64
64007996--64008127	40	3.3	40	85	0	174	30	13	21	34	1.92
64008098--64008249	78	1.9	78	90	0	241	32	15	20	31	1.94
64015377--64015611	46	5.2	46	83	1	258	41	14	22	21	1.90
64015874--64015906	17	2.0	17	94	5	59	48	0	15	36	1.45
64016352--64016405	22	2.5	22	96	0	99	18	29	18	33	1.95
64018194--64018333	40	3.4	41	75	11	126	27	16	30	26	1.97
64021088--64021136	22	2.2	22	77	0	53	71	2	0	26	0.97
64021081--64021137	30	1.9	30	92	3	98	68	1	0	29	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64021080--64021144	29	2.2	29	86	5	96	64	4	0	30	1.14
64027182--64027255	28	2.5	29	72	16	71	27	10	18	43	1.83
64037391--64037432	14	3.0	14	76	13	50	28	9	2	59	1.41
64039798--64039859	25	2.4	25	79	15	63	62	1	1	33	1.14
64041466--64041571	52	2.0	52	100	0	212	33	15	16	33	1.90
64044308--64044339	13	2.3	15	89	10	50	25	21	15	37	1.93
64062688--64062757	23	3.0	24	73	21	76	28	42	7	21	1.79
64063767--64063801	15	2.3	15	100	0	70	51	11	20	17	1.75
64068581--64068612	15	2.1	15	100	0	64	53	0	18	28	1.45
64068895--64068977	43	2.0	42	97	2	157	46	8	22	21	1.78
64071281--64071313	10	3.4	10	91	4	50	33	0	0	66	0.92
64071268--64071311	22	2.0	22	82	8	54	34	2	0	63	1.07
64080151--64080184	15	2.2	16	89	5	52	67	0	0	32	0.91
64100311--64100365	27	2.0	27	100	0	110	43	16	14	25	1.86
64103371--64103400	14	2.1	14	93	0	51	23	0	3	73	0.98
64111621--64111694	34	2.2	34	83	9	89	68	0	27	4	1.07
64113529--64113585	23	2.4	24	79	5	62	52	7	3	36	1.46
64114048--64114084	17	2.2	17	90	4	58	67	0	0	32	0.91
64114946--64115028	41	2.0	41	92	0	139	57	0	3	38	1.16
64116228--64116342	30	3.8	30	90	2	178	26	46	3	24	1.69
64116228--64116342	60	1.9	60	92	3	196	26	46	3	24	1.69
64116886--64117056	25	6.8	25	71	14	84	32	7	4	56	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64116973--64117063	23	3.9	24	75	11	73	32	6	5	54	1.49
64117185--64117231	16	3.1	15	84	12	60	31	2	2	63	1.18
64117185--64117232	14	3.3	14	85	11	53	31	2	2	64	1.16
64117192--64117235	23	2.0	22	86	4	61	31	0	2	65	1.05
64118753--64118788	12	3.0	12	95	0	63	27	25	5	41	1.77
64127054--64127226	68	2.5	68	85	6	208	28	14	23	33	1.94
64127230--64127570	72	4.8	70	83	12	401	29	16	20	34	1.94
64127321--64127833	268	1.9	268	88	7	774	29	16	20	34	1.94
64127461--64127695	125	1.8	126	87	9	352	28	17	20	34	1.95
64127590--64127836	73	3.4	71	88	6	365	29	17	20	33	1.95
64137655--64137694	15	2.7	15	100	0	80	7	0	50	42	1.30
64138961--64138994	7	4.9	7	88	0	50	32	2	26	38	1.71
64142459--64142483	7	3.6	7	100	0	50	76	0	0	24	0.80
64142466--64142520	27	2.1	26	83	10	67	74	3	3	18	1.11
64142622--64142662	17	2.5	16	85	14	57	31	2	2	63	1.20
64160385--64160426	17	2.5	17	92	7	68	76	2	9	11	1.12
64160385--64160428	16	2.6	17	85	10	63	75	2	9	13	1.14
64160385--64160433	17	2.9	17	88	8	57	75	4	8	12	1.16
64160582--64161043	216	2.1	214	95	0	825	39	9	6	43	1.63
64160993--64161031	19	2.1	19	85	9	53	30	2	0	66	1.05
64161106--64161145	16	2.4	16	91	4	62	5	10	10	75	1.19
64172045--64172074	16	1.9	16	93	6	53	43	0	13	43	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64172931--64172999	29	2.4	29	92	0	111	31	1	0	66	1.00
64172937--64172989	17	3.4	17	73	24	62	33	1	0	64	1.05
64172946--64172995	17	3.2	16	74	25	54	36	0	0	64	0.94
64182612--64182645	13	2.6	14	86	13	54	32	17	5	44	1.73
64185423--64185455	6	5.5	6	89	10	50	87	0	12	0	0.53
64193373--64193449	18	4.2	18	76	14	68	67	3	9	19	1.34
64193637--64193706	33	2.1	35	87	10	103	27	7	1	64	1.28
64193637--64193722	34	2.5	35	82	12	101	25	6	1	66	1.24
64193784--64193853	28	2.7	25	86	8	88	31	18	0	50	1.48
64193784--64193858	5	14.2	5	78	17	55	32	18	0	49	1.48
64194024--64194057	16	2.1	16	100	0	68	41	11	0	47	1.40
64196673--64196707	18	1.9	18	88	0	52	11	20	11	57	1.64
64196874--64196910	2	18.5	2	100	0	74	0	48	0	51	1.00
64202543--64202601	30	2.0	30	93	0	100	55	11	3	28	1.52
64202634--64202681	22	2.2	22	84	0	60	58	10	10	20	1.60
64206134--64206181	23	2.0	24	96	4	89	70	2	0	27	0.98
64209839--64209877	19	2.1	19	90	4	62	48	2	2	46	1.29
64209895--64209948	24	2.2	24	93	0	90	51	5	5	37	1.49
64217220--64217258	9	4.0	10	83	16	55	69	2	0	28	1.02
64217220--64217258	19	2.0	20	90	5	62	69	2	0	28	1.02
64217220--64217260	10	4.3	9	84	9	55	70	2	0	26	0.99
64218453--64218524	33	2.2	33	92	2	119	27	25	12	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64219260--64219311	27	1.9	27	84	7	70	19	23	15	42	1.89
64219272--64219331	27	2.2	27	82	5	77	18	26	15	40	1.90
64225006--64225063	18	3.6	17	73	26	63	50	0	0	50	1.00
64227379--64227447	31	2.2	31	78	0	75	26	11	4	57	1.52
64227670--64227706	3	12.3	3	94	0	65	32	2	0	64	1.07
64227736--64227776	4	10.8	4	84	10	50	19	0	4	75	0.98
64227856--64227912	24	2.3	25	77	17	64	29	1	1	66	1.12
64227875--64227908	15	2.3	15	89	0	50	32	2	2	61	1.26
64243914--64243983	18	4.0	17	79	18	65	32	2	1	62	1.18
64243916--64243965	16	3.2	15	83	13	57	34	2	2	62	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250