genome.fa.s9.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  104  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33584626--33584652	13	2.1	13	100	0	54	14	33	37	14	1.88
33589614--33589653	15	2.6	16	84	4	55	15	7	0	77	0.98
33597463--33597566	52	2.0	52	100	0	208	42	28	7	21	1.80
33597562--33597647	34	2.5	34	96	1	154	48	31	6	12	1.68
33604206--33604232	13	2.1	13	100	0	54	37	0	14	48	1.45
33609886--33610010	60	2.1	60	100	0	250	39	9	27	24	1.86
33612810--33613023	46	4.7	43	79	12	205	27	17	31	23	1.97
33614171--33614209	21	1.9	20	84	5	51	17	30	28	23	1.97
33618042--33618128	43	2.0	42	91	2	138	29	33	18	18	1.95
33618058--33618121	18	3.2	18	69	26	56	29	34	21	14	1.93
33624327--33624747	47	9.0	47	89	0	617	31	11	29	27	1.91
33624448--33624523	23	3.2	25	62	24	63	28	11	34	25	1.91
33624561--33624640	25	3.3	25	68	16	78	32	10	27	30	1.89
33624636--33624711	23	3.2	25	62	24	63	28	13	34	23	1.92
33624910--33625061	37	4.1	37	91	0	223	21	19	33	25	1.97
33636661--33636771	27	4.2	26	88	5	141	37	20	24	17	1.93
33641083--33641122	21	1.9	21	84	0	53	30	10	25	35	1.88
33641628--33641723	28	3.5	28	86	1	122	25	11	34	29	1.91
33641653--33641745	28	3.3	28	86	1	78	29	11	32	26	1.92
33647308--33647349	15	2.8	15	78	7	50	52	19	11	16	1.74
33658407--33658446	21	1.9	21	89	0	62	32	10	22	35	1.87
33658959--33659053	28	3.4	28	85	0	91	24	12	33	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33660305--33660338	18	1.9	18	88	5	52	41	11	17	29	1.85
33666067--33666162	27	3.6	27	83	8	124	18	25	18	37	1.94
33667875--33667899	13	1.9	13	100	0	50	32	28	40	0	1.57
33669334--33669492	43	3.7	43	75	10	155	24	19	25	30	1.98
33670133--33670160	10	2.8	10	100	0	56	17	0	28	53	1.44
33675754--33675833	29	2.7	29	75	9	81	50	11	8	30	1.68
33675956--33676010	3	19.3	3	78	10	53	67	0	30	1	1.01
33675956--33676011	11	4.7	11	79	14	58	67	0	30	1	1.01
33675965--33676006	13	3.1	14	86	10	52	66	0	30	2	1.04
33675962--33676010	14	3.5	14	81	15	57	67	0	30	2	1.02
33677855--33678014	68	2.4	68	94	0	284	31	13	30	25	1.93
33681881--33682060	46	3.8	49	80	13	200	28	27	21	22	1.99
33681889--33682060	93	1.8	93	91	0	281	27	27	22	22	1.99
33681932--33682075	46	3.1	46	72	18	136	29	26	20	22	1.99
33688162--33688385	68	3.3	66	82	8	227	34	14	27	22	1.94
33688290--33688419	66	1.9	67	83	10	165	34	16	29	20	1.94
33693373--33693403	15	2.1	15	100	0	62	35	19	0	45	1.51
33695638--33695664	11	2.5	11	100	0	54	22	7	18	51	1.70
33697059--33697253	93	2.1	92	88	4	286	44	4	4	47	1.41
33697286--33697319	17	2.0	17	94	0	59	44	5	0	50	1.26
33697286--33697324	17	2.4	16	87	8	53	43	5	0	51	1.24
33697290--33697329	17	2.3	18	83	12	57	47	5	0	47	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33697409--33697543	15	8.9	15	67	24	70	42	2	3	51	1.32
33697285--33697503	120	1.8	119	89	6	345	40	3	5	50	1.44
33697511--33697552	15	2.7	16	82	14	52	45	0	2	52	1.13
33697502--33697799	154	1.9	156	95	2	546	47	5	3	44	1.41
33697652--33697686	18	2.0	17	88	5	52	45	0	0	54	0.99
33697919--33697957	16	2.4	16	86	0	51	28	33	2	35	1.71
33697932--33697988	16	3.6	16	95	0	87	33	36	0	29	1.58
33699579--33699615	18	2.1	18	89	0	56	27	24	21	27	1.99
33704927--33705022	29	3.2	29	76	7	95	23	8	18	48	1.75
33705337--33705486	43	3.5	43	87	0	228	24	30	22	24	1.99
33710050--33710106	7	8.0	7	78	3	51	42	35	1	21	1.63
33710110--33710148	7	5.4	7	81	6	51	28	56	0	15	1.40
33710637--33710813	41	4.4	41	89	4	252	20	22	23	34	1.97
33711234--33711269	17	2.1	18	94	5	65	44	16	5	33	1.71
33715733--33715760	8	3.5	8	100	0	56	42	21	21	14	1.88
33716181--33716228	25	1.9	25	82	0	60	33	22	18	25	1.97
33716265--33716335	20	3.5	20	90	0	106	35	14	21	29	1.92
33716381--33716500	24	5.0	24	88	10	174	29	20	22	27	1.99
33716382--33716479	47	2.1	48	94	5	173	29	20	21	28	1.98
33716382--33716479	23	4.1	23	89	10	153	29	20	21	28	1.98
33716693--33716756	31	2.1	31	93	0	110	37	15	21	25	1.93
33718451--33719553	48	22.9	48	86	5	952	30	28	6	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33718451--33719212	96	8.1	96	90	3	1208	30	28	6	34	1.83
33718451--33719212	144	5.4	144	90	4	1208	30	28	6	34	1.83
33718957--33719029	35	2.1	35	97	0	137	28	26	6	38	1.82
33718813--33719553	179	3.9	179	82	11	780	29	28	6	35	1.83
33718909--33719077	83	2.0	83	94	0	293	28	27	7	35	1.85
33719195--33719234	19	2.1	19	100	0	80	37	27	0	35	1.57
33719147--33719281	67	2.0	67	91	0	216	30	28	5	36	1.79
33719099--33719327	115	2.0	115	92	0	386	29	27	6	36	1.81
33719051--33719375	163	2.0	163	93	0	560	30	28	6	35	1.81
33718992--33719555	259	2.3	259	87	5	851	30	27	6	35	1.82
33722820--33723173	40	9.0	40	91	2	556	26	30	22	20	1.98
33725341--33725523	39	4.7	40	88	4	241	25	22	27	24	2.00
33725304--33725523	39	5.6	39	85	7	220	25	22	27	24	2.00
33725354--33725546	78	2.5	77	84	6	230	26	21	26	24	2.00
33725303--33725529	118	1.9	117	80	7	264	25	22	27	24	1.99
33727765--33728285	48	10.9	48	94	0	907	30	27	6	35	1.82
33745418--33745476	30	1.9	31	86	3	84	49	3	18	28	1.64
33748464--33748730	46	5.8	46	90	1	374	41	13	23	20	1.89
33748789--33748993	102	2.0	102	99	0	401	37	5	21	34	1.78
33749308--33749354	24	2.0	23	91	4	76	10	4	36	48	1.57
33751587--33751611	8	3.1	8	100	0	50	24	0	0	76	0.80
33756162--33756247	27	3.2	26	88	4	127	17	23	22	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33757528--33757557	12	2.5	12	100	0	60	23	16	50	10	1.75
33763963--33764041	27	3.0	26	81	5	95	20	24	21	34	1.97
33766910--33766958	25	2.0	25	83	0	62	36	6	14	42	1.70
33770330--33770361	15	2.1	15	94	0	55	28	21	12	37	1.90
33770400--33770434	12	2.9	12	86	0	52	68	0	17	14	1.21
33773047--33773086	21	2.0	21	85	5	55	22	22	37	17	1.94
33775139--33775282	38	3.8	38	91	1	209	30	25	22	20	1.98
33775122--33775298	76	2.3	78	84	5	234	29	25	22	22	1.99
33783427--33783559	49	2.7	49	80	6	153	21	27	21	30	1.98
33783427--33783600	93	1.8	93	82	6	222	24	28	20	27	1.99
33786027--33786137	27	4.1	26	88	5	141	36	23	23	17	1.95
33786027--33786137	54	2.1	54	87	3	161	36	23	23	17	1.95
33787759--33787868	26	4.2	26	97	0	193	35	24	6	33	1.81
33789763--33789940	40	4.5	40	93	2	297	24	28	23	24	2.00
33797756--33797933	40	4.5	40	95	2	306	24	28	23	24	2.00
33808553--33808591	17	2.3	17	81	0	51	46	0	17	35	1.49
33814881--33814905	13	1.9	13	100	0	50	32	4	0	64	1.12
33815036--33815068	14	2.3	15	89	5	50	24	3	0	72	0.98
33816844--33817088	49	4.9	49	80	2	274	26	19	25	28	1.99
33821377--33821445	28	2.4	28	82	4	84	27	33	24	14	1.94
33822769--33822918	43	3.5	43	76	3	151	32	23	15	28	1.95
33824993--33825045	27	2.0	26	89	7	81	56	7	15	20	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33828640--33828813	48	3.6	48	82	3	208	22	29	21	26	1.99
33828640--33828816	96	1.8	96	86	4	259	22	29	21	25	1.99
33829106--33829150	7	6.4	7	89	0	72	15	0	35	48	1.45
33829112--33829155	14	3.1	14	83	0	61	15	0	36	47	1.46
33832508--33832801	39	7.8	39	87	7	437	22	25	28	23	1.99
33832537--33832595	29	2.0	29	100	0	118	23	16	30	28	1.97
33836016--33836079	30	2.1	30	88	5	94	21	37	21	18	1.94
33836856--33837122	48	5.6	48	76	10	201	24	29	19	26	1.98
33836856--33837143	96	3.0	95	84	2	344	25	29	18	27	1.98
33838565--33838773	53	4.0	52	83	4	226	35	15	15	32	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250