genome.fa.s9.2.7.7.80.10.50.1000.183.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  183  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57835393--57835512	35	3.4	35	90	2	188	32	11	24	31	1.91
57836150--57836205	18	3.1	17	79	5	58	41	14	5	39	1.68
57836212--57836284	18	3.9	19	75	5	69	46	16	6	30	1.73
57836606--57836650	23	2.0	23	100	0	90	31	0	17	51	1.46
57836662--57836717	21	2.5	22	78	16	71	39	8	0	51	1.33
57845279--57845522	38	6.7	37	81	12	274	21	22	24	31	1.98
57845263--57845522	76	3.6	73	80	12	302	22	21	24	31	1.98
57845360--57845412	27	2.0	27	96	0	97	18	18	30	32	1.96
57845322--57845522	65	2.9	68	85	8	246	21	20	25	32	1.97
57845284--57845488	103	2.0	103	96	0	374	21	20	25	32	1.98
57845519--57845649	45	3.0	44	82	8	144	25	21	29	24	1.99
57847677--57847854	97	1.8	97	85	2	250	42	9	21	26	1.83
57852207--57852232	7	3.7	7	100	0	52	42	0	0	57	0.98
57862828--57862882	9	6.2	9	79	14	53	47	0	1	50	1.11
57863641--57863687	15	3.1	15	70	11	51	55	8	0	36	1.31
57871064--57871241	47	3.8	47	82	5	200	32	25	20	21	1.98
57874303--57874347	23	2.0	23	90	0	72	31	2	0	66	1.04
57874311--57874365	29	2.0	27	85	7	74	30	1	0	67	1.01
57874363--57874447	39	2.2	40	84	2	109	24	1	8	65	1.27
57875537--57875590	19	2.8	18	72	10	54	48	0	0	51	1.00
57882642--57882766	62	2.0	62	93	3	216	44	6	12	36	1.69
57886808--57886854	12	3.9	12	86	8	69	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57886809--57886854	23	2.0	24	91	4	76	32	0	0	67	0.91
57886809--57886854	13	3.8	13	80	13	62	32	0	0	67	0.91
57888450--57888509	31	1.9	31	83	6	77	43	13	10	33	1.77
57891237--57891330	42	2.2	42	88	0	134	18	26	13	41	1.88
57891309--57891351	21	2.0	21	86	0	59	20	34	4	39	1.74
57891264--57891393	63	2.1	63	95	0	233	18	26	11	43	1.84
57895626--57895736	57	1.9	58	88	1	170	28	28	18	23	1.98
57897496--57897690	38	5.0	38	88	2	255	32	26	21	19	1.97
57900913--57902870	984	2.0	981	94	0	3409	35	16	22	25	1.95
57910983--57911037	23	2.2	24	78	15	58	63	3	1	30	1.22
57910999--57911032	17	1.9	18	88	5	52	64	0	2	32	1.08
57910994--57911041	23	2.0	25	92	8	82	66	0	4	29	1.10
57912420--57912474	26	2.1	26	83	6	67	67	7	0	25	1.16
57912410--57912467	17	3.5	17	75	11	66	63	5	0	31	1.16
57912410--57912475	17	3.9	16	73	13	53	63	6	0	30	1.18
57912550--57912594	19	2.3	19	84	3	54	53	11	0	35	1.37
57922368--57922461	47	2.0	46	93	2	161	40	21	20	18	1.92
57926516--57926550	15	2.3	15	90	9	54	51	22	0	25	1.48
57927218--57927706	41	11.9	41	86	1	631	34	26	17	20	1.95
57927257--57927704	82	5.5	82	97	0	826	35	26	17	20	1.95
57927819--57927999	64	2.9	63	89	8	262	41	17	8	32	1.79
57930849--57930899	20	2.5	20	84	12	61	56	7	0	35	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57930869--57930906	19	2.1	18	85	14	51	55	5	0	39	1.23
57931306--57932121	131	6.2	131	84	2	987	29	17	12	39	1.87
57931314--57932116	393	2.0	392	89	1	1205	29	17	12	39	1.87
57932523--57932666	72	2.0	72	100	0	288	27	11	15	45	1.80
57933574--57933631	29	2.0	29	93	0	98	43	29	0	27	1.55
57933580--57933627	15	3.3	15	73	5	53	43	27	0	29	1.55
57935231--57935270	20	2.0	21	85	5	55	47	5	22	25	1.71
57939808--57940417	302	2.0	302	91	1	1001	27	22	19	29	1.98
57945089--57945161	38	1.9	38	86	5	103	24	6	16	52	1.68
57945167--57945205	21	1.9	20	84	5	51	10	2	12	74	1.17
57945854--57945891	18	2.1	18	90	0	58	28	18	18	34	1.95
57947571--57947627	30	1.9	30	85	3	80	66	1	1	29	1.12
57949233--57949717	3	162.3	3	69	11	196	61	2	7	29	1.35
57949324--57949370	17	2.6	18	83	6	60	51	2	8	38	1.45
57949321--57949411	19	4.7	19	73	11	69	56	1	8	34	1.38
57949360--57949455	47	2.1	45	83	11	115	60	1	8	30	1.33
57949646--57949714	32	2.2	32	83	0	84	63	2	2	30	1.23
57949935--57949979	23	2.0	23	81	0	54	68	4	2	24	1.19
57950350--57950382	5	6.8	5	93	6	50	84	3	0	12	0.72
57951071--57951314	44	5.4	44	70	11	170	27	21	19	31	1.97
57951000--57951180	85	2.1	84	82	7	222	27	19	19	33	1.97
57951293--57951699	68	6.0	68	87	0	589	27	22	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57951711--57952322	87	7.0	87	88	1	836	22	24	21	32	1.98
57951804--57952267	44	10.7	44	65	7	196	22	24	21	32	1.98
57952380--57952579	66	3.1	66	94	2	341	34	13	20	33	1.90
57957627--57957814	3	62.7	3	73	10	98	60	0	9	30	1.32
57957627--57957771	39	3.6	39	73	12	112	60	0	8	31	1.31
57957778--57957832	21	2.4	22	82	11	58	56	1	12	29	1.47
57958014--57958560	3	184.3	3	69	11	238	61	2	7	28	1.37
57958203--57958322	58	2.1	58	83	9	147	60	1	8	29	1.35
57958361--57958417	31	1.9	31	82	10	75	70	1	5	22	1.17
57958340--57958450	34	3.2	34	78	10	118	68	0	6	24	1.18
57958779--57958823	23	2.0	23	86	0	63	71	4	0	24	1.05
57960576--57960642	34	2.0	34	96	0	125	22	8	19	49	1.76
57962969--57963004	13	2.7	13	86	4	54	25	2	0	72	0.98
57963100--57963149	19	2.7	18	81	9	55	30	0	4	66	1.10
57963328--57963383	17	3.3	17	80	12	53	48	3	1	46	1.30
57963347--57963392	24	1.9	24	82	8	58	50	2	2	45	1.26
57963335--57963399	17	3.8	16	80	13	60	49	3	1	46	1.27
57963617--57963651	17	2.1	17	94	0	61	42	2	0	54	1.15
57963559--57963651	7	12.9	7	71	18	57	45	2	3	49	1.30
57963617--57963669	24	2.2	25	86	10	74	37	3	1	56	1.28
57963374--57963893	248	2.1	248	83	6	640	39	8	6	45	1.61
57963835--57963887	16	3.2	16	79	10	52	41	1	7	49	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57964252--57964304	20	2.5	20	87	6	70	60	0	1	37	1.08
57964794--57964857	19	3.5	19	76	4	69	31	1	1	65	1.11
57971413--57971497	39	2.2	40	85	6	111	30	22	17	29	1.97
57979587--57979641	23	2.4	23	84	6	67	7	12	14	65	1.46
57979587--57979646	24	2.6	24	81	5	70	6	11	15	66	1.42
57984203--57984248	5	8.6	5	86	13	65	76	0	2	21	0.90
57987719--57987981	132	2.0	132	87	3	386	29	19	18	32	1.96
57987719--57988085	132	2.8	131	81	3	371	28	19	19	33	1.96
57991715--57991871	42	3.7	42	78	9	149	26	18	24	30	1.98
57991707--57991871	43	3.9	42	77	9	163	26	18	24	30	1.98
57993480--57993512	17	2.0	17	88	5	50	60	3	24	12	1.46
58003682--58003720	19	2.0	20	90	5	62	17	2	10	69	1.28
58004122--58004148	13	2.1	13	100	0	54	25	22	22	29	1.99
58013380--58013450	16	4.4	16	87	3	99	36	4	28	30	1.76
58013381--58013450	32	2.2	32	92	5	115	37	2	28	31	1.72
58013432--58013520	44	2.0	44	84	4	115	32	5	24	37	1.79
58013610--58013768	58	2.8	57	80	4	171	55	4	0	39	1.25
58016833--58016883	23	2.2	23	86	6	68	11	27	13	47	1.78
58021043--58021088	21	2.2	21	100	0	92	19	19	15	45	1.85
58022165--58022217	27	2.0	27	100	0	106	28	30	11	30	1.91
58024974--58025062	17	5.1	17	67	17	56	33	3	2	60	1.25
58025051--58025083	17	1.9	17	88	11	50	36	0	9	54	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58035575--58035667	20	4.6	21	70	21	67	45	0	1	53	1.07
58035614--58035656	5	8.6	5	100	0	86	39	0	0	60	0.97
58036734--58036758	12	2.1	12	100	0	50	16	24	20	40	1.91
58036781--58036811	6	5.2	6	92	0	53	16	19	16	48	1.81
58037594--58037646	3	19.0	3	81	14	69	73	0	0	26	0.83
58038994--58039029	18	2.1	17	89	5	54	69	0	0	30	0.89
58038994--58039029	17	2.1	17	94	0	63	69	0	0	30	0.89
58039052--58039096	20	2.2	20	84	7	56	64	8	0	26	1.23
58058827--58058888	3	20.7	3	96	0	97	61	0	4	33	1.17
58059655--58059687	11	3.1	11	86	4	50	81	3	6	9	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250