genome.fa.s9.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  117  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37665887--37665936	18	2.7	19	84	9	68	0	6	8	86	0.72
37669471--37669495	13	1.9	13	100	0	50	40	24	4	32	1.73
37674580--37674604	12	2.1	12	100	0	50	52	24	0	24	1.48
37683007--37683100	42	2.2	42	81	9	102	30	25	18	25	1.98
37684270--37684294	13	1.9	13	100	0	50	40	24	4	32	1.73
37685606--37685630	12	2.1	12	100	0	50	32	20	16	32	1.94
37686076--37686111	18	2.0	18	94	0	63	30	5	11	52	1.59
37699479--37699555	4	19.2	4	94	0	136	25	1	22	50	1.56
37702731--37702782	20	2.6	20	93	0	86	17	34	23	25	1.96
37705956--37706200	49	4.9	49	84	2	319	25	17	27	28	1.98
37705956--37706198	100	2.4	99	87	2	353	25	18	27	28	1.98
37709214--37709278	15	4.4	15	75	22	66	10	12	12	64	1.50
37711406--37711701	49	5.9	49	78	3	295	25	19	27	28	1.99
37711509--37711696	100	1.9	100	95	0	340	25	20	26	28	1.99
37728878--37729062	40	4.6	39	82	6	176	25	28	21	24	1.99
37738015--37738186	93	1.8	93	94	0	308	26	30	22	20	1.98
37738007--37738182	46	3.8	46	82	4	228	27	30	21	20	1.98
37743652--37743684	8	4.1	8	92	7	50	48	0	51	0	1.00
37751503--37751538	10	3.7	10	85	7	56	25	11	13	50	1.75
37753651--37753680	8	3.8	8	90	0	51	6	23	16	53	1.66
37753644--37753680	16	2.3	16	95	0	65	5	21	16	56	1.59
37756147--37756324	27	6.6	27	84	3	205	26	14	28	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37756147--37756324	54	3.3	55	84	4	227	26	14	28	29	1.95
37764061--37764211	27	5.6	27	81	4	160	27	14	28	29	1.95
37764062--37764211	82	1.8	81	87	4	221	26	14	28	30	1.95
37764061--37764211	55	2.8	53	81	4	167	27	14	28	29	1.95
37775082--37775134	25	2.1	25	92	0	88	30	20	13	35	1.91
37780327--37780435	57	1.9	57	88	3	166	29	31	12	26	1.93
37780320--37780435	28	4.1	29	84	5	148	30	29	12	27	1.93
37780332--37780433	29	3.6	28	84	5	134	29	29	13	27	1.94
37786901--37786941	19	2.1	20	95	4	75	26	14	34	24	1.94
37791549--37791616	34	2.0	34	100	0	136	29	14	29	26	1.95
37798673--37798800	55	2.3	55	80	1	148	32	23	25	18	1.97
37800800--37800829	6	5.0	6	100	0	60	16	0	0	83	0.65
37804633--37804692	30	2.0	30	83	6	77	38	6	26	28	1.81
37805339--37805584	49	4.9	50	83	2	307	26	17	26	29	1.98
37806404--37806455	23	2.3	23	100	0	104	21	3	30	44	1.70
37820018--37820050	16	2.1	16	100	0	66	30	0	30	39	1.57
37827778--37827963	40	4.7	40	92	2	293	25	29	22	23	1.99
37835934--37836125	40	4.8	40	92	2	307	23	30	22	23	1.99
37839382--37839472	45	2.0	45	93	0	155	40	3	10	45	1.56
37839384--37839453	14	4.5	17	72	20	62	42	1	10	45	1.46
37846275--37846423	57	2.6	57	77	7	149	30	17	21	30	1.96
37853849--37854033	79	2.3	81	84	7	236	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37853850--37854033	40	4.6	40	83	9	216	24	22	27	25	2.00
37853902--37854066	79	2.1	79	84	6	210	26	21	27	25	1.99
37861019--37861102	9	8.9	9	70	18	55	58	2	3	35	1.28
37861025--37861099	29	2.6	29	75	8	73	58	2	4	34	1.31
37861272--37861300	3	9.7	3	100	0	58	68	0	0	31	0.89
37861434--37861464	15	2.1	15	100	0	62	19	6	6	67	1.35
37871706--37871847	40	3.5	40	81	11	150	25	21	28	24	1.99
37871742--37871847	39	2.7	41	88	5	146	26	22	27	23	2.00
37872071--37872428	47	7.6	47	94	1	617	32	8	30	29	1.87
37872547--37872625	37	2.1	37	88	4	115	25	18	30	25	1.98
37873841--37874152	40	7.8	40	93	0	516	25	21	27	25	1.99
37878175--37878316	40	3.6	40	81	11	150	25	21	28	24	1.99
37878175--37878335	79	2.0	80	81	8	186	26	21	27	24	1.99
37878540--37878850	47	6.6	47	93	1	514	32	8	30	28	1.87
37878969--37879047	37	2.1	37	86	4	106	26	18	29	25	1.98
37882292--37882499	40	5.2	40	83	6	251	24	21	27	25	1.99
37882292--37882513	79	2.8	79	81	8	261	25	21	27	26	1.99
37896544--37896666	33	3.8	33	96	2	230	17	9	42	30	1.82
37896544--37896666	65	1.9	66	96	1	230	17	9	42	30	1.82
37904030--37904068	20	2.0	20	84	0	51	38	12	0	48	1.42
37930437--37930751	47	6.8	45	72	9	206	26	19	29	25	1.98
37930434--37930649	47	4.8	45	76	11	208	25	18	29	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37930434--37930649	91	2.4	91	88	0	324	25	18	29	26	1.98
37930851--37930880	12	2.5	12	94	0	51	43	6	33	16	1.74
37934109--37934171	30	2.1	30	85	5	83	38	3	26	31	1.72
37947288--37947332	11	4.4	11	81	13	60	42	2	0	55	1.12
37947286--37947405	20	6.4	19	69	19	67	38	1	0	59	1.13
37947288--37947407	63	1.9	63	81	10	147	38	1	0	59	1.13
37953136--37953192	20	2.9	21	87	10	77	38	8	19	33	1.82
37953242--37953329	26	3.4	26	95	0	158	29	19	22	28	1.98
37961010--37961133	26	4.8	26	92	1	205	29	21	20	27	1.98
37961183--37961257	20	3.8	20	89	6	102	34	17	10	37	1.84
37961200--37961238	11	3.7	11	80	13	55	33	20	10	35	1.86
37961200--37961256	9	5.8	10	76	15	57	35	19	8	36	1.83
37971259--37971336	28	2.8	28	92	0	129	34	8	23	33	1.86
37973702--37973752	23	2.1	24	85	10	68	47	0	3	49	1.20
37973708--37973749	16	2.7	15	85	7	57	50	0	2	47	1.14
37984501--37984534	13	2.6	13	100	0	68	5	32	5	55	1.48
37985075--37985353	95	2.9	95	92	0	443	36	21	16	25	1.94
37985517--37985587	37	1.9	37	94	5	126	36	23	2	36	1.70
37986119--37986170	25	2.1	25	88	0	77	34	26	7	30	1.85
37986859--37986905	23	2.0	23	95	0	85	55	4	0	40	1.19
37987698--37987754	28	2.0	28	93	0	96	33	21	22	22	1.97
37988180--37988256	27	2.9	27	78	3	84	27	16	18	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38003094--38003251	30	5.3	29	83	8	192	49	13	16	20	1.79
38003115--38003254	60	2.3	60	97	0	262	49	14	16	20	1.80
38003115--38003257	6	23.8	6	80	13	170	49	13	16	20	1.79
38003414--38003500	27	3.2	26	90	4	120	37	20	21	19	1.94
38003414--38003515	27	3.8	27	85	5	107	38	21	21	18	1.94
38003414--38003515	54	1.9	53	81	2	123	38	21	21	18	1.94
38003673--38003737	22	3.0	22	80	8	78	33	23	23	20	1.97
38005501--38005611	39	2.8	39	81	8	109	26	22	29	21	1.99
38005514--38005684	39	4.3	39	83	6	193	25	21	28	24	1.99
38005461--38005684	79	2.8	79	80	9	215	25	20	28	25	1.99
38005461--38005684	40	5.7	40	80	8	217	25	20	28	25	1.99
38005541--38005717	79	2.2	80	81	6	193	26	21	28	23	1.99
38013295--38013517	40	5.7	40	82	7	233	25	21	27	25	1.99
38013295--38013515	79	2.8	78	82	6	241	25	21	27	25	1.99
38013374--38013550	79	2.2	80	82	4	200	25	21	28	24	1.99
38015096--38015633	27	20.2	27	85	7	586	25	20	20	34	1.97
38015069--38015633	54	10.6	54	85	4	646	25	20	20	33	1.97
38015069--38015633	81	7.1	81	87	5	713	25	20	20	33	1.97
38015367--38015406	19	2.1	19	100	0	80	27	25	20	27	1.99
38015167--38015690	54	9.9	52	81	11	367	25	19	20	33	1.97
38015588--38015748	81	2.0	81	80	4	182	27	11	23	37	1.90
38015825--38015997	27	6.4	27	87	2	249	38	6	25	29	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38015825--38015997	81	2.1	81	92	2	285	38	6	25	29	1.82
38015618--38016021	27	15.1	27	77	7	225	32	8	23	35	1.85
38023401--38023465	29	2.2	29	83	0	76	30	18	24	26	1.98
38023411--38023509	29	3.4	29	80	12	105	28	15	28	28	1.96
38027198--38027257	27	2.3	27	82	2	77	41	18	21	18	1.90
38027394--38027564	27	6.4	26	79	5	180	26	22	16	35	1.95
38027394--38027564	54	3.2	53	87	2	218	26	22	16	35	1.95
38027394--38027564	81	2.1	80	82	5	202	26	22	16	35	1.95
38031054--38031280	50	4.5	50	79	8	219	27	18	24	29	1.98
38031380--38031431	27	2.0	26	81	11	61	38	1	23	36	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250