genome.fa.s9.2.7.7.80.10.50.1000.226.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  226  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69733667--69734148	177	2.7	178	87	2	666	28	23	16	31	1.96
69733662--69734292	177	3.6	175	82	4	662	27	23	17	31	1.97
69734480--69734667	64	2.9	63	92	1	295	37	13	18	30	1.89
69734719--69734748	6	5.2	6	92	8	53	0	13	0	86	0.57
69734719--69734748	11	2.6	12	94	5	53	0	13	0	86	0.57
69740046--69740075	14	2.1	14	93	0	51	16	0	36	46	1.47
69744103--69744311	115	1.8	115	85	5	296	25	2	17	54	1.56
69744550--69744585	18	1.9	19	88	5	56	27	2	8	61	1.39
69748443--69748498	22	2.7	22	83	8	73	28	12	8	50	1.70
69749755--69749947	96	2.0	98	89	6	304	21	23	9	45	1.82
69753757--69753781	12	2.1	12	100	0	50	52	8	8	32	1.60
69754438--69754608	94	1.8	94	93	2	299	33	18	12	35	1.88
69754941--69754980	21	1.9	21	84	0	53	27	25	22	25	2.00
69760092--69760147	29	1.9	29	96	0	103	16	37	14	32	1.88
69761704--69761789	41	2.1	41	95	0	154	31	23	24	20	1.98
69761952--69761994	15	2.9	15	75	3	52	25	4	27	41	1.75
69762930--69763082	78	1.9	79	93	3	265	34	13	22	28	1.93
69765608--69765782	46	3.8	46	78	13	205	29	29	20	20	1.98
69765616--69765786	93	1.8	93	93	0	297	28	29	21	20	1.98
69768816--69769112	148	2.0	148	97	0	558	33	14	16	35	1.89
69770119--69770450	183	1.8	183	97	0	637	27	16	14	42	1.87
69771339--69771466	9	13.6	9	78	9	130	46	20	0	32	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69771339--69771466	57	2.2	57	88	0	184	46	20	0	32	1.56
69771356--69771433	39	2.0	39	94	0	138	46	20	0	33	1.51
69771350--69771466	48	2.4	49	85	2	148	45	21	0	32	1.58
69771681--69771938	41	6.3	41	94	2	414	31	26	23	18	1.97
69772994--69773026	17	1.9	17	93	0	57	57	0	9	33	1.30
69773004--69773066	24	2.6	24	73	12	65	58	0	3	38	1.14
69775007--69775129	60	2.0	60	100	0	246	30	21	11	37	1.88
69777313--69777352	21	1.9	21	94	0	71	30	10	12	47	1.74
69776844--69778205	502	2.8	501	96	3	2475	35	12	11	40	1.79
69777814--69777853	21	1.9	21	94	0	71	30	10	12	47	1.74
69780004--69780033	13	2.2	14	94	5	53	43	0	0	56	0.99
69780408--69780448	21	2.0	21	100	0	82	26	19	53	0	1.45
69780737--69781005	42	6.4	42	86	1	270	25	18	24	31	1.97
69786518--69786561	21	2.1	21	91	0	70	22	22	54	0	1.45
69787245--69787294	20	2.6	19	80	20	59	52	12	0	36	1.39
69787255--69787294	20	2.0	20	90	9	64	50	12	0	37	1.41
69790942--69790984	22	1.9	23	85	4	61	65	0	0	34	0.93
69790958--69791003	17	2.8	17	75	15	51	67	0	0	32	0.91
69790949--69791023	31	2.4	33	78	8	86	60	0	2	37	1.11
69797025--69797052	3	9.3	3	100	0	56	67	0	0	32	0.91
69805890--69806133	121	2.0	120	95	0	443	35	22	7	34	1.82
69812794--69812834	22	1.9	22	85	5	57	46	7	0	46	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69813964--69814007	16	2.8	16	82	6	54	40	6	2	50	1.42
69819303--69819333	2	15.5	2	100	0	62	51	0	48	0	1.00
69824425--69824458	7	4.5	8	92	7	54	50	0	0	50	1.00
69829462--69829492	15	2.1	15	100	0	62	12	6	45	35	1.68
69839742--69839938	106	1.9	106	96	0	367	29	20	21	28	1.98
69842632--69843486	132	6.5	132	93	0	1338	29	25	16	27	1.97
69843481--69843769	95	3.0	95	90	4	476	29	22	19	29	1.98
69843671--69844350	134	5.1	134	95	1	1191	28	23	20	27	1.99
69843740--69844239	46	11.1	46	66	10	244	28	24	21	26	1.99
69844298--69844647	86	4.1	86	92	0	547	26	24	22	26	2.00
69844373--69844593	42	5.2	42	61	16	103	24	23	25	27	2.00
69850303--69850499	106	1.9	106	96	0	367	29	20	21	28	1.98
69856811--69856886	28	2.7	27	75	15	73	32	17	0	50	1.46
69856839--69856890	21	2.5	20	81	9	68	36	13	0	50	1.42
69856925--69856954	15	1.9	16	93	6	53	16	10	6	66	1.41
69858704--69858730	7	3.9	7	100	0	54	14	40	0	44	1.46
69858364--69859070	361	2.0	361	95	0	1281	24	23	12	38	1.90
69859116--69859231	20	5.8	20	72	6	92	39	13	5	41	1.67
69859136--69859231	40	2.4	40	80	0	102	39	13	4	42	1.64
69859155--69859273	60	2.0	60	83	3	150	34	16	5	43	1.70
69859314--69859351	20	1.9	20	88	0	58	44	18	0	36	1.50
69859464--69859676	20	10.8	20	68	7	78	40	17	4	37	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69859753--69859847	20	4.8	20	73	7	68	40	16	4	38	1.68
69859975--69860162	20	9.3	20	75	9	166	39	18	4	38	1.70
69859975--69860162	61	3.1	58	76	6	178	39	18	4	38	1.70
69859975--69860162	81	2.3	81	96	0	340	39	18	4	38	1.70
69873550--69873590	20	2.0	20	100	0	82	51	14	0	34	1.43
69882632--69882685	25	2.1	27	83	13	69	57	0	1	40	1.09
69891632--69891671	18	2.2	18	86	8	55	67	12	0	20	1.22
69891755--69891815	30	2.0	30	96	0	113	57	11	3	27	1.49
69893570--69893618	25	2.0	25	84	4	64	24	2	8	65	1.31
69893582--69893628	17	2.6	18	76	6	51	21	2	6	70	1.20
69894162--69894229	30	2.2	32	82	10	88	48	20	10	20	1.78
69894162--69894230	31	2.3	30	85	7	86	47	20	10	21	1.79
69897527--69897827	46	6.7	46	86	6	395	38	14	24	22	1.92
69897478--69897783	84	3.5	84	92	3	468	36	15	24	23	1.93
69898088--69898134	25	2.0	25	83	8	62	53	4	14	27	1.60
69898941--69899017	31	2.5	31	93	0	136	14	29	33	22	1.93
69899665--69899692	10	2.8	10	100	0	56	60	17	0	21	1.36
69902001--69902069	31	2.3	31	82	7	79	21	11	20	46	1.82
69906318--69906345	13	2.2	13	100	0	56	39	14	14	32	1.86
69907385--69907424	14	2.9	14	84	0	53	32	7	17	42	1.77
69907408--69907447	20	2.0	20	90	0	62	27	10	12	50	1.72
69907393--69907459	34	1.9	35	90	3	109	31	8	13	46	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69908072--69908110	18	2.2	18	100	0	78	46	10	0	43	1.37
69909785--69909824	19	2.1	19	95	0	71	47	7	45	0	1.31
69912796--69912824	8	3.6	8	100	0	58	37	0	0	62	0.96
69914143--69914199	15	3.9	15	88	2	89	35	0	12	52	1.39
69915776--69916024	50	4.8	50	84	4	275	20	29	23	26	1.99
69915775--69916024	100	2.4	104	87	6	348	20	29	23	26	1.99
69916119--69916150	13	2.5	13	94	0	55	56	12	0	31	1.37
69916362--69916419	30	1.9	30	89	0	89	31	24	3	41	1.71
69917343--69917451	21	5.1	21	82	4	119	16	23	23	35	1.95
69917343--69917451	42	2.5	42	86	2	155	16	23	23	35	1.95
69919311--69919370	28	2.2	26	77	11	66	26	26	11	35	1.91
69919325--69919396	28	2.6	28	86	4	83	29	29	12	29	1.93
69919891--69919925	17	2.0	18	88	5	54	25	22	5	45	1.74
69922152--69922415	130	2.0	130	81	4	300	28	18	18	35	1.94
69933328--69933408	24	3.4	24	73	13	85	16	28	20	34	1.94
69937747--69937885	69	2.0	69	95	0	251	27	13	31	27	1.94
69944290--69944314	6	4.2	6	100	0	50	16	0	0	84	0.63
69957635--69957668	16	2.2	15	94	5	59	64	2	5	26	1.30
69958619--69958688	26	2.8	25	80	4	86	30	4	17	48	1.66
69959356--69959422	31	2.2	32	81	10	86	41	16	13	28	1.86
69959928--69960013	45	1.9	45	90	4	138	54	2	4	38	1.34
69960398--69960447	26	2.0	24	88	7	73	64	4	0	32	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69960418--69960464	22	2.2	20	85	7	58	70	4	0	25	1.05
69960434--69960475	20	2.0	21	86	9	59	71	7	0	21	1.09
69962268--69962333	31	2.1	32	83	8	82	36	1	7	54	1.38
69962809--69962880	35	2.1	34	82	12	87	23	15	5	55	1.61
69963259--69963321	30	2.1	30	90	0	99	55	14	4	25	1.58
69977261--69977311	26	2.0	26	96	0	93	11	23	35	29	1.90
69977185--69977546	101	3.6	102	93	4	594	19	20	30	30	1.97
69984835--69984885	26	2.0	26	96	0	93	11	23	35	29	1.90
69984758--69985123	102	3.6	104	94	2	618	18	20	30	30	1.97
69987092--69987132	21	2.0	21	95	0	73	26	7	39	26	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250