genome.fa.s9.2.7.7.80.10.50.1000.196.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  196  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61211130--61211252	58	2.1	60	82	8	146	27	16	7	48	1.72
61213756--61213794	20	2.0	20	89	0	60	28	5	23	43	1.75
61215321--61215412	19	4.9	18	73	13	71	63	1	1	34	1.09
61215332--61215410	9	8.6	9	77	10	54	63	0	1	35	1.03
61215850--61215884	15	2.2	16	90	5	54	22	0	2	74	0.95
61216750--61216801	24	2.1	26	89	7	81	50	0	0	50	1.00
61216789--61216851	19	3.3	19	80	8	74	38	0	6	55	1.25
61216786--61216857	20	3.6	21	76	14	71	40	0	5	54	1.24
61220933--61221955	207	5.0	206	85	3	1244	31	16	13	37	1.88
61227852--61227876	11	2.3	11	100	0	50	12	0	28	60	1.32
61230397--61230472	37	2.0	39	87	5	111	43	3	3	48	1.40
61232555--61232607	23	2.3	23	83	0	61	13	22	9	54	1.67
61239203--61239621	131	3.2	132	77	8	338	26	20	19	33	1.97
61241557--61241587	5	6.2	5	100	0	62	38	0	0	61	0.96
61242150--61242207	30	1.9	30	85	0	80	43	3	22	31	1.70
61242419--61242450	13	2.5	13	94	0	55	31	0	12	56	1.37
61242545--61242786	50	4.7	50	85	4	288	26	24	28	20	1.99
61242545--61242794	100	2.4	103	87	6	355	26	24	28	21	1.99
61244520--61244593	26	2.9	26	83	2	87	33	16	10	39	1.83
61244737--61244770	12	2.8	12	86	0	50	14	23	0	61	1.33
61246913--61246959	21	2.3	20	81	3	58	44	0	8	46	1.33
61247395--61247469	26	2.9	26	82	2	80	20	22	22	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61247422--61247516	25	3.9	24	74	10	86	18	26	22	32	1.97
61247391--61247527	24	5.5	25	72	10	93	19	24	21	35	1.96
61247421--61247589	25	6.8	25	69	8	71	20	24	20	34	1.96
61248562--61248594	13	2.5	13	100	0	66	9	21	39	30	1.84
61262806--61262843	17	2.3	17	90	4	60	7	23	0	68	1.16
61262846--61262892	10	4.9	9	80	17	51	72	0	4	23	1.02
61263185--61263218	6	5.7	6	92	0	59	82	0	17	0	0.67
61275352--61275376	12	2.1	12	100	0	50	36	16	8	40	1.77
61276827--61276982	41	3.8	41	89	6	235	28	20	22	28	1.98
61277197--61277294	33	2.9	33	84	7	108	30	10	22	36	1.87
61283934--61283981	24	2.1	23	85	11	64	54	0	14	31	1.41
61284462--61284617	41	3.8	41	89	6	235	28	20	22	28	1.98
61284832--61284929	33	2.9	33	84	7	108	30	10	22	36	1.87
61288371--61288483	9	11.9	9	74	10	100	32	1	20	45	1.62
61288375--61288492	57	2.1	57	85	0	155	33	1	18	46	1.59
61288404--61288481	39	2.0	39	89	0	120	34	1	19	44	1.59
61291922--61292263	158	2.2	156	79	8	354	28	22	14	33	1.94
61293240--61293284	14	3.2	14	81	12	65	48	26	0	24	1.51
61293557--61293652	7	13.7	7	80	4	86	39	39	0	20	1.53
61293557--61293669	21	5.4	21	71	6	86	38	40	0	20	1.53
61293696--61293831	46	3.0	46	96	0	245	41	23	2	32	1.67
61293797--61293845	7	7.0	7	78	0	53	48	28	0	22	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61294007--61294216	41	5.1	41	85	2	264	19	22	22	36	1.95
61294007--61294255	123	2.0	123	81	6	290	18	21	22	37	1.94
61294280--61294305	12	2.2	12	100	0	52	46	30	15	7	1.74
61294359--61294438	25	3.2	25	78	0	88	21	21	20	37	1.94
61303475--61303516	17	2.4	18	81	18	54	73	2	7	16	1.15
61304429--61304484	29	2.0	29	89	3	87	42	7	1	48	1.41
61312834--61312885	19	2.7	18	80	16	52	42	1	3	51	1.31
61324405--61324453	25	1.9	26	87	4	73	63	4	2	30	1.24
61325430--61325491	30	2.1	30	81	6	72	40	0	8	51	1.31
61326604--61326901	147	2.0	147	97	0	560	37	12	8	40	1.74
61331035--61331167	66	2.0	66	100	0	266	12	18	15	54	1.70
61331202--61331234	4	8.0	4	96	3	57	27	0	0	72	0.85
61332971--61333026	25	2.3	23	85	11	69	30	0	3	66	1.09
61332987--61333038	24	2.1	25	96	3	97	26	0	3	69	1.06
61350207--61350252	10	4.4	11	74	20	53	30	0	6	63	1.20
61350539--61350581	20	2.2	19	84	16	52	46	0	0	53	1.00
61351032--61351076	20	2.3	20	79	17	51	48	0	4	46	1.22
61352728--61352768	18	2.2	20	82	8	50	19	0	12	68	1.21
61352769--61352801	11	2.9	12	86	13	52	66	0	0	33	0.92
61359418--61359453	18	2.0	18	88	0	54	30	2	2	63	1.22
61368677--61368710	6	5.8	6	86	6	52	32	32	2	32	1.73
61370869--61370916	21	2.2	21	79	13	53	47	2	2	47	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61380709--61380804	34	2.8	34	67	22	83	60	7	6	26	1.47
61382153--61382444	127	2.2	130	86	4	385	30	19	19	30	1.96
61382292--61382841	161	3.2	163	82	10	606	30	20	19	30	1.97
61392577--61392729	47	3.2	46	81	8	173	31	27	15	25	1.96
61392559--61392729	47	3.6	47	79	7	168	30	26	16	26	1.97
61394369--61394422	12	4.5	12	72	9	56	7	25	14	51	1.68
61396267--61396312	23	2.0	23	84	12	60	45	10	6	36	1.65
61396274--61396318	23	2.0	23	82	8	56	40	13	8	37	1.76
61406861--61407127	29	9.3	29	73	4	209	17	15	35	30	1.91
61406827--61407127	57	5.2	57	89	3	444	18	15	35	30	1.92
61411998--61412076	28	2.8	28	86	0	104	34	11	25	29	1.91
61419340--61419386	24	1.9	25	87	12	71	31	6	0	61	1.21
61419489--61419531	15	3.0	14	83	6	59	30	9	11	48	1.71
61420339--61420384	10	4.6	10	84	10	67	21	8	2	67	1.29
61425346--61425410	28	2.3	28	91	0	103	35	27	7	29	1.85
61425527--61425605	27	2.8	28	82	5	106	20	26	20	32	1.97
61425527--61425617	27	3.2	28	79	4	76	21	27	18	31	1.97
61429511--61429563	5	10.8	5	81	18	67	20	1	0	77	0.87
61431135--61431184	10	5.0	10	81	13	59	22	8	2	68	1.26
61439007--61439147	42	3.2	44	84	6	180	32	2	9	55	1.46
61442810--61442871	18	3.3	18	69	20	54	56	0	6	37	1.25
61443310--61443337	11	2.5	11	100	0	56	71	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61453275--61453464	96	2.0	96	98	0	371	24	25	17	32	1.97
61458846--61458967	42	2.9	42	83	2	156	43	18	20	18	1.88
61458849--61458967	41	2.9	42	83	2	150	43	18	21	16	1.88
61461541--61461567	2	13.5	2	100	0	54	51	48	0	0	1.00
61468432--61468494	26	2.4	26	84	12	76	52	0	6	41	1.27
61473960--61474011	26	2.0	26	100	0	104	26	11	34	26	1.91
61475057--61475167	53	2.1	53	94	0	195	43	11	10	34	1.76
61476471--61476496	11	2.4	11	100	0	52	50	7	42	0	1.31
61477147--61477195	18	2.7	18	93	0	80	36	0	8	55	1.30
61477149--61477196	3	16.0	3	82	0	60	35	0	6	58	1.23
61477149--61477196	12	4.0	12	91	0	69	35	0	6	58	1.23
61477337--61477408	24	2.9	24	78	15	67	44	0	22	33	1.53
61477552--61477647	39	2.5	39	80	6	108	20	23	28	27	1.99
61512970--61513012	18	2.4	18	88	7	61	65	4	0	30	1.13
61517852--61517923	2	36.0	2	100	0	144	0	50	0	50	1.00
61521343--61521394	24	2.2	24	89	0	77	55	9	1	32	1.43
61524164--61524206	9	4.6	9	77	11	50	60	0	2	37	1.10
61524167--61524235	18	3.8	17	75	19	52	56	1	4	37	1.28
61526489--61526524	15	2.4	15	90	0	54	27	16	0	55	1.42
61526707--61526736	16	1.9	15	93	6	51	56	0	13	30	1.37
61535401--61535459	28	2.1	28	100	0	118	30	20	6	42	1.78
61543902--61543938	16	2.3	17	81	13	51	59	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61543951--61543977	7	3.9	7	100	0	54	44	11	0	44	1.39
61548423--61548643	43	5.2	43	83	5	252	31	21	20	26	1.98
61552893--61552921	11	2.7	11	94	5	51	0	27	62	10	1.28
61553083--61553132	26	2.0	24	88	7	73	64	6	0	30	1.18
61553103--61553161	21	2.8	21	78	12	59	69	8	0	22	1.15
61553208--61553240	15	2.1	16	88	11	50	69	0	0	30	0.88
61556939--61557022	28	3.0	28	87	5	116	20	2	29	47	1.62
61557226--61557308	21	3.9	21	81	7	96	18	22	22	36	1.95
61557226--61557308	44	2.0	41	83	7	103	18	22	22	36	1.95
61558390--61558576	46	3.9	48	74	15	154	26	15	28	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250