genome.fa.s9.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  151  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48801717--48801802	38	2.3	38	85	0	109	37	15	11	36	1.83
48803732--48803794	30	2.1	30	88	5	92	65	9	9	15	1.47
48803710--48803896	28	6.7	28	69	11	80	59	8	13	18	1.59
48803856--48804075	28	8.0	28	70	10	123	56	6	15	21	1.61
48803761--48804075	28	11.4	29	69	11	112	57	6	14	20	1.61
48803912--48803955	23	1.9	23	90	0	70	59	9	11	20	1.59
48806503--48806575	26	2.8	26	85	0	83	30	16	10	42	1.82
48806724--48806758	6	5.8	6	89	0	52	20	25	0	54	1.45
48806724--48806758	18	1.9	18	94	0	61	20	25	0	54	1.45
48820154--48820206	21	2.3	24	75	18	58	39	3	5	50	1.44
48820702--48820734	14	2.2	16	89	10	52	42	3	6	48	1.43
48824391--48824447	26	2.2	26	81	15	73	47	17	12	22	1.81
48824863--48824898	18	2.0	18	88	0	54	11	41	30	16	1.83
48825548--48825582	16	2.1	18	89	10	56	77	2	8	11	1.10
48826667--48826723	25	2.5	22	76	17	64	38	10	12	38	1.77
48831833--48831858	5	5.2	5	100	0	52	0	19	0	80	0.71
48834654--48834736	42	2.0	42	97	0	157	26	21	1	50	1.56
48839052--48839207	43	3.7	42	78	7	154	33	26	14	25	1.94
48839047--48839207	85	1.9	85	81	7	193	34	26	13	24	1.93
48841121--48841268	74	2.0	74	100	0	296	45	5	21	27	1.73
48841796--48841835	20	2.0	20	100	0	80	40	15	0	45	1.46
48844053--48844162	26	4.2	26	95	0	175	34	5	23	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48849807--48849916	26	4.2	26	97	0	184	33	5	24	36	1.79
48852651--48852685	3	11.7	3	100	0	70	34	0	0	65	0.93
48863775--48863877	50	2.1	50	96	0	188	42	11	15	30	1.82
48874428--48874487	13	4.8	12	74	15	50	58	3	1	36	1.25
48874442--48874503	12	5.0	12	79	14	63	53	4	4	37	1.44
48874422--48874499	38	2.1	38	95	0	138	56	5	2	35	1.35
48875022--48875102	23	3.5	23	83	5	92	39	12	12	35	1.81
48875047--48875085	12	3.3	12	78	7	53	41	15	12	30	1.85
48875542--48875591	20	2.4	21	84	15	61	36	0	2	62	1.07
48891290--48891316	14	1.9	14	100	0	54	29	7	18	44	1.77
48896167--48896194	13	2.2	13	100	0	56	39	7	21	32	1.80
48899602--48899654	21	2.5	21	76	11	63	3	47	18	30	1.67
48900064--48900092	13	2.1	14	93	6	51	55	10	0	34	1.34
48905127--48905544	9	45.7	9	66	17	114	36	2	15	45	1.61
48905131--48905531	16	25.0	16	65	20	117	36	2	14	45	1.61
48905146--48905449	46	6.7	46	77	15	310	36	3	14	45	1.62
48905210--48905387	82	2.2	81	93	1	302	37	2	14	45	1.59
48905289--48905423	51	2.7	51	84	8	199	37	3	13	45	1.61
48905373--48905531	80	2.0	78	90	2	246	36	3	15	44	1.63
48905258--48905429	31	5.5	30	72	17	102	37	3	14	44	1.62
48905563--48905596	17	2.0	17	100	0	68	35	5	5	52	1.50
48907039--48907067	14	2.1	14	100	0	58	31	13	0	55	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48908039--48908217	27	6.7	26	83	10	94	37	18	16	27	1.92
48908039--48908261	54	4.1	54	78	9	197	36	17	17	27	1.93
48908101--48908262	27	6.0	27	86	0	207	35	17	21	25	1.95
48908586--48908652	27	2.5	27	82	2	82	23	22	26	26	2.00
48908651--48908716	32	2.1	32	97	0	123	28	13	15	42	1.85
48908807--48908869	22	2.9	22	79	13	76	15	23	25	34	1.95
48908936--48909016	27	3.0	26	87	5	108	17	23	22	37	1.94
48909134--48909238	6	16.8	6	66	18	54	20	18	13	47	1.82
48909134--48909198	25	2.6	25	82	0	85	23	20	12	44	1.84
48911872--48911989	37	3.2	37	83	4	148	24	13	47	14	1.80
48912790--48912821	15	2.1	15	94	0	55	28	6	0	65	1.16
48912898--48912936	14	2.7	15	88	4	53	51	35	0	12	1.40
48913728--48913917	105	1.8	105	89	2	301	24	20	18	35	1.95
48914778--48914902	62	2.0	62	85	0	169	23	4	16	56	1.59
48915033--48915079	23	2.0	23	100	0	94	36	8	4	51	1.52
48918161--48918268	28	3.9	28	80	7	112	29	12	21	36	1.91
48918158--48918282	28	4.5	28	78	7	110	28	15	21	34	1.94
48921893--48921938	23	1.9	25	86	8	69	34	4	8	52	1.52
48933110--48933210	43	2.4	43	85	5	134	42	10	7	38	1.69
48934930--48934983	20	2.9	18	77	20	58	53	5	1	38	1.35
48934899--48935043	68	2.1	70	82	7	170	55	4	3	36	1.38
48936639--48936670	4	7.8	4	93	6	55	25	3	0	71	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48940748--48940772	12	2.1	12	100	0	50	0	8	0	92	0.40
48940994--48941038	18	2.5	18	85	7	65	26	4	4	64	1.32
48943294--48943337	21	2.2	20	84	12	54	36	4	2	56	1.32
48945470--48945513	17	2.4	18	81	7	54	27	4	2	65	1.23
48945485--48945536	21	2.4	21	81	18	63	25	3	1	69	1.16
48945836--48945873	18	2.1	18	95	0	67	23	5	2	68	1.23
48945846--48945885	15	2.7	14	85	11	53	27	5	0	67	1.11
48945865--48945893	12	2.4	12	100	0	58	24	6	0	68	1.13
48947014--48947073	28	2.1	27	82	11	68	38	11	11	38	1.78
48949074--48949125	24	2.2	24	82	0	59	53	7	3	34	1.48
48983838--48983900	32	2.0	32	87	0	90	30	23	15	30	1.96
48984235--48984325	27	3.4	26	83	3	110	24	21	17	36	1.95
49003145--49003182	20	1.9	20	88	0	58	10	36	31	21	1.87
49004931--49005009	37	2.1	37	88	4	115	25	30	18	25	1.98
49005128--49005658	47	11.4	47	90	4	810	29	29	8	32	1.86
49015589--49015637	20	2.5	20	96	3	91	55	6	6	32	1.49
49015589--49015637	10	5.0	10	80	5	64	55	6	6	32	1.49
49017154--49017234	42	1.9	42	82	0	99	14	29	25	29	1.95
49018213--49018267	27	2.0	27	100	0	110	45	3	7	43	1.49
49019874--49019910	19	2.0	19	89	5	58	56	2	0	40	1.13
49019907--49019939	17	2.0	16	94	5	57	45	0	0	54	0.99
49019901--49019940	19	2.2	19	86	8	57	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49019901--49019941	18	2.2	19	86	4	57	51	0	0	48	1.00
49020582--49020621	21	1.9	21	85	10	55	42	7	7	42	1.61
49020718--49020759	16	2.6	16	81	7	50	35	2	2	59	1.23
49029226--49029301	38	2.0	38	100	0	152	31	13	23	31	1.93
49030487--49030631	40	3.6	40	84	4	184	26	24	26	23	2.00
49042472--49042530	23	2.6	23	100	0	118	57	6	3	32	1.41
49042472--49042531	11	5.3	11	76	7	66	56	6	3	33	1.42
49051291--49051457	84	2.0	83	90	1	262	36	20	18	23	1.95
49057643--49057675	14	2.4	14	90	10	50	60	0	0	39	0.97
49058590--49058621	16	2.0	16	100	0	64	37	31	6	25	1.81
49068539--49068567	14	2.0	15	93	6	51	3	0	20	75	0.94
49072334--49072371	18	2.1	18	95	0	67	31	0	13	55	1.38
49072507--49072562	25	2.2	25	90	0	85	21	23	17	37	1.94
49076714--49076797	31	2.7	31	94	1	143	28	27	16	27	1.97
49076821--49076954	42	3.2	42	96	0	250	34	20	14	31	1.92
49077102--49077171	25	2.8	25	93	4	115	25	22	25	25	2.00
49078003--49078054	27	1.9	28	84	7	72	19	21	23	36	1.95
49078162--49078285	27	4.6	27	79	7	144	29	5	20	44	1.74
49078079--49078285	110	1.9	108	82	4	254	30	6	20	42	1.77
49078163--49078318	81	1.9	81	84	2	206	29	8	19	42	1.81
49078052--49078327	54	5.1	53	75	8	173	30	9	19	40	1.83
49078162--49078325	27	6.1	26	70	14	100	28	9	21	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49078317--49078522	27	7.3	28	77	13	165	38	8	23	29	1.85
49078361--49078429	35	2.0	35	91	5	113	34	8	20	36	1.83
49078335--49078510	54	3.0	61	78	15	199	38	7	21	32	1.83
49087719--49087767	25	2.0	25	95	0	89	26	24	16	32	1.96
49088822--49088945	64	2.0	63	93	1	212	27	28	19	25	1.99
49089334--49089419	34	2.6	33	87	5	113	43	20	3	32	1.69
49105546--49105607	28	2.2	28	97	0	115	25	27	24	22	2.00
49110976--49111174	5	39.4	5	90	6	305	41	0	0	58	1.02
49111179--49111208	15	1.9	16	93	6	53	46	3	13	36	1.60
49111684--49111745	3	20.7	3	96	0	115	33	1	0	64	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250