genome.fa.s9.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  95  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30831961--30831994	17	2.0	17	100	0	68	23	29	0	47	1.52
30843620--30843909	101	2.9	101	87	1	420	29	14	23	32	1.94
30843620--30843976	101	3.6	100	83	3	396	30	15	24	30	1.95
30846168--30846318	27	5.6	27	86	1	178	38	23	10	27	1.88
30846168--30846468	81	3.7	80	81	4	241	36	20	16	26	1.94
30846247--30846468	27	8.3	27	85	2	252	35	19	19	25	1.95
30846871--30846950	6	13.0	6	75	15	74	18	16	16	48	1.81
30846881--30846938	19	3.4	19	65	30	58	18	17	17	46	1.84
30846871--30846965	31	3.1	31	93	0	154	20	17	14	47	1.83
30853583--30853837	55	4.8	54	80	7	256	21	25	17	35	1.95
30853630--30853827	108	1.8	110	87	4	303	23	25	17	33	1.96
30855180--30855351	47	3.6	47	76	13	158	22	29	20	27	1.98
30861562--30861602	21	2.0	21	90	4	66	24	24	39	12	1.89
30864957--30865017	28	2.2	28	84	0	77	31	24	9	34	1.88
30878743--30878895	40	3.7	42	74	10	134	28	14	26	30	1.95
30878743--30878897	83	1.9	82	81	4	186	28	14	26	30	1.95
30909278--30909432	42	3.7	42	85	3	195	29	16	25	29	1.96
30909278--30909439	85	1.9	84	84	3	218	28	15	26	29	1.96
30909673--30909697	11	2.3	11	100	0	50	32	0	20	48	1.50
30938395--30938537	71	2.0	71	97	0	268	21	12	32	33	1.91
30939336--30939573	27	8.8	27	88	0	323	29	21	8	40	1.82
30939336--30939574	81	3.0	81	88	0	361	29	21	8	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30939309--30939584	81	3.4	81	84	2	331	30	22	8	38	1.84
30939571--30939763	27	7.1	27	92	0	269	35	19	20	24	1.96
30939568--30939801	27	8.7	27	83	6	210	34	20	19	26	1.96
30939568--30939782	54	4.0	54	84	3	263	34	18	21	25	1.96
30939576--30939782	81	2.6	81	94	1	353	34	18	21	25	1.96
30940096--30940153	27	2.1	28	83	3	73	22	24	20	32	1.98
30940016--30940169	67	2.3	67	88	2	229	19	28	21	30	1.97
30940272--30940451	6	29.3	6	75	14	163	18	17	14	48	1.81
30940272--30940381	31	3.5	31	78	14	145	20	18	13	48	1.81
30940294--30940430	37	3.5	37	79	11	157	18	18	15	48	1.82
30940275--30940430	43	3.7	43	78	12	182	18	18	14	48	1.82
30944685--30944768	33	2.5	33	79	7	89	22	26	11	39	1.89
30949411--30949501	46	2.0	46	84	4	121	26	31	6	35	1.82
30949481--30949712	94	2.5	93	82	2	293	27	30	10	32	1.90
30949515--30949683	47	3.6	47	92	0	284	26	28	12	33	1.92
30956045--30956193	74	2.0	74	100	0	298	30	21	17	30	1.96
30957961--30958090	45	3.0	44	85	5	174	26	29	20	23	1.99
30961526--30961668	71	2.0	71	97	0	268	22	13	31	32	1.92
30962467--30962625	27	5.9	27	88	0	237	28	22	8	40	1.84
30962467--30962625	81	2.0	81	93	0	273	28	22	8	40	1.84
30962535--30962652	54	2.2	54	81	3	130	33	20	10	35	1.86
30962626--30962849	27	8.0	27	80	8	189	37	18	20	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30962645--30962721	35	2.2	35	85	0	100	44	20	14	20	1.86
30962625--30962748	62	2.0	62	91	0	203	40	20	17	21	1.92
30962687--30962844	81	2.0	80	94	1	280	35	17	22	24	1.95
30962683--30962849	54	3.1	54	85	0	217	35	19	20	24	1.96
30963074--30963231	71	2.3	68	83	4	192	18	27	22	31	1.97
30963334--30963495	6	26.3	6	71	16	118	18	17	14	49	1.80
30963334--30963474	31	4.5	31	78	10	153	18	17	14	48	1.81
30963337--30963395	25	2.4	25	88	0	82	20	18	13	47	1.82
30963363--30963444	37	2.2	37	91	0	128	17	14	17	51	1.77
30963362--30963463	19	5.8	19	69	21	87	16	17	16	49	1.81
30967717--30967813	33	2.9	33	72	6	88	21	23	11	43	1.85
30975426--30975593	26	6.8	26	71	14	99	38	21	21	18	1.93
30987236--30987286	25	2.1	23	82	7	57	47	19	17	15	1.83
30987356--30987404	25	2.0	25	84	8	64	34	16	22	26	1.95
30994797--30994866	33	2.2	32	82	7	79	21	8	18	51	1.72
30997507--30997568	31	2.0	30	90	3	97	54	4	25	14	1.60
31001389--31001467	37	2.1	37	88	4	115	25	30	18	25	1.98
31001586--31001935	47	7.4	47	93	1	583	28	29	8	32	1.87
31004408--31004467	30	2.0	30	83	0	75	41	6	23	28	1.79
31009262--31009305	22	2.0	23	90	4	72	59	2	36	2	1.23
31015196--31015252	29	1.9	30	89	3	89	56	22	1	19	1.51
31020703--31020758	25	2.2	25	77	0	58	26	10	19	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31039687--31039765	39	2.0	39	95	0	140	36	17	17	27	1.93
31042783--31042977	40	4.8	40	95	1	338	27	29	22	20	1.99
31051107--31051323	40	5.4	40	92	2	330	27	28	22	21	1.99
31055299--31055342	23	1.9	24	81	9	56	31	0	29	38	1.58
31065295--31065489	39	5.0	39	84	0	237	32	15	33	18	1.92
31065365--31065427	19	3.3	18	76	12	63	28	15	41	14	1.87
31065291--31065488	78	2.5	78	86	0	270	32	15	33	18	1.92
31065375--31065486	19	5.7	19	70	13	84	30	16	37	16	1.90
31067122--31067151	15	1.9	16	93	6	53	53	6	20	20	1.67
31070645--31070674	15	1.9	16	93	6	53	53	6	20	20	1.67
31075103--31075271	47	3.6	46	80	7	146	31	20	27	20	1.97
31075011--31075264	140	1.8	140	80	6	309	30	20	28	21	1.98
31082571--31082833	46	5.7	45	70	11	147	28	17	29	23	1.97
31082619--31082841	47	4.8	48	75	9	142	28	19	30	22	1.98
31092456--31092499	21	2.0	23	87	12	67	50	11	9	29	1.69
31099229--31099327	29	3.4	29	85	0	126	23	17	24	35	1.95
31100435--31100474	20	1.9	22	85	10	57	62	2	12	22	1.42
31101844--31101903	18	3.3	18	75	11	59	30	33	5	31	1.79
31103844--31103874	15	2.1	15	93	0	53	6	16	16	61	1.54
31110571--31110622	19	2.9	17	72	10	59	36	17	21	25	1.94
31115676--31115731	28	1.9	30	82	13	73	69	14	8	7	1.35
31116606--31116697	29	3.2	29	74	11	98	22	15	22	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31124928--31125138	106	2.0	106	94	0	368	37	16	20	25	1.93
31127056--31127088	17	2.0	17	88	5	50	39	3	6	51	1.42
31128043--31128149	37	2.9	37	79	5	126	43	14	14	27	1.84
31131672--31131855	40	4.6	40	84	2	244	26	23	26	24	2.00
31135318--31135362	20	2.2	20	88	0	63	48	2	13	35	1.54
31139917--31139963	22	2.2	21	85	11	60	17	31	31	19	1.94
31142671--31142740	35	2.0	35	97	0	131	15	0	28	55	1.41
31149648--31149793	43	3.4	43	83	7	174	15	22	31	30	1.95
31151708--31151792	39	2.2	40	93	2	145	29	20	11	38	1.88
31152321--31152359	20	2.0	20	89	0	60	48	2	12	35	1.55
31155284--31155384	27	3.7	26	81	7	103	34	15	19	29	1.93
31155373--31155720	27	12.9	27	82	6	260	38	16	10	33	1.84
31155373--31155722	81	4.3	80	77	7	298	38	16	10	33	1.84
31155971--31156092	41	3.0	41	86	0	154	21	20	28	29	1.98
31156234--31156288	22	2.5	22	74	11	58	21	23	23	30	1.99
31156494--31156542	22	2.2	22	89	7	73	12	20	24	42	1.86
31157418--31157442	13	1.9	13	100	0	50	60	0	24	16	1.36
31160588--31160985	45	8.8	45	77	7	274	20	19	16	43	1.88
31160588--31160784	91	2.2	90	83	7	238	18	20	15	46	1.84
31162541--31162592	27	1.9	27	88	0	77	25	19	23	32	1.97
31162576--31162644	28	2.5	27	88	6	86	37	15	26	20	1.93
31162583--31162649	28	2.4	29	87	7	102	34	16	26	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31167987--31168048	30	2.1	30	100	0	124	43	16	16	24	1.87
31170489--31170707	40	5.4	40	92	2	343	27	29	22	21	1.99
31178103--31178362	40	6.5	40	93	2	425	27	29	22	20	1.99
31185335--31185382	25	1.9	24	84	16	62	47	6	2	43	1.40
31194398--31194462	22	3.0	22	75	8	69	30	21	26	21	1.98
31194603--31194721	41	2.9	41	89	0	184	25	30	21	22	1.99
31194990--31195306	27	11.7	27	75	8	153	32	11	16	39	1.84
31195049--31195228	81	2.2	81	80	11	192	32	10	17	40	1.82
31195295--31195359	27	2.4	27	89	0	94	32	18	16	32	1.94
31195297--31195371	27	2.8	26	80	11	80	32	20	17	30	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250