genome.fa.s9.2.7.7.80.10.50.1000.199.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  199  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62025323--62025577	55	4.8	52	79	6	230	36	16	24	22	1.94
62025330--62025530	108	1.8	110	88	4	309	34	16	24	23	1.95
62025769--62025799	16	1.9	16	93	0	53	41	0	22	35	1.54
62030056--62030097	15	2.9	15	89	3	59	42	2	9	45	1.49
62030539--62030612	38	2.0	38	84	7	98	22	24	25	27	2.00
62034821--62034866	23	2.0	23	84	12	60	45	10	6	36	1.65
62034828--62034872	23	2.0	23	82	8	56	40	13	8	37	1.76
62038474--62038516	18	2.4	18	80	0	50	27	6	16	48	1.71
62038457--62038515	27	2.2	27	87	0	82	28	6	16	47	1.72
62042139--62042214	37	2.1	37	97	0	143	32	18	11	36	1.87
62042906--62042956	12	4.1	13	87	12	72	49	0	49	1	1.12
62042916--62042961	6	7.7	6	90	9	76	52	0	47	0	1.00
62042916--62042954	19	2.1	19	100	0	78	53	0	46	0	1.00
62042891--62042956	25	2.6	25	88	7	89	48	0	46	4	1.22
62042916--62042961	25	1.9	23	91	8	74	52	0	47	0	1.00
62050998--62051069	36	2.0	37	83	8	94	30	6	20	41	1.79
62060697--62060759	26	2.5	26	78	2	65	50	9	4	34	1.56
62061122--62061184	24	2.5	26	85	10	78	58	3	3	34	1.30
62062185--62062255	16	4.4	16	90	0	106	36	7	26	29	1.83
62062237--62062330	44	2.1	44	90	4	143	34	5	25	35	1.79
62062501--62062533	17	1.9	17	100	0	66	63	0	0	36	0.95
62063037--62063071	18	1.9	18	94	0	61	34	20	14	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62063079--62063323	40	6.1	40	92	1	384	33	15	9	42	1.79
62063075--62063323	120	2.1	120	93	0	426	32	15	9	42	1.80
62067136--62067178	20	2.0	22	86	13	63	48	4	9	37	1.56
62075354--62075381	3	9.3	3	100	0	56	32	67	0	0	0.91
62084616--62084660	11	3.9	11	80	11	54	35	0	2	62	1.08
62086789--62087098	46	6.7	46	92	0	469	39	14	23	22	1.91
62093564--62093627	28	2.3	26	72	25	60	50	3	7	39	1.47
62097961--62098008	23	2.1	23	84	7	62	18	25	20	35	1.95
62097948--62098051	25	4.2	25	68	19	65	20	23	21	35	1.96
62098086--62098165	25	3.2	25	73	8	65	22	26	18	32	1.97
62099650--62099703	19	2.8	18	86	5	72	18	42	24	14	1.88
62105943--62105982	21	2.0	21	90	5	64	47	0	10	42	1.37
62110469--62110523	18	3.1	18	80	17	69	41	0	32	25	1.56
62110469--62110521	9	5.9	9	76	8	54	43	0	32	24	1.55
62111412--62111453	21	2.0	21	100	0	84	61	9	4	23	1.45
62111725--62111773	25	2.0	25	84	8	64	42	2	0	55	1.11
62112995--62113029	18	1.9	18	88	0	52	20	5	8	65	1.40
62114655--62114706	18	2.8	18	85	2	68	44	7	5	42	1.57
62114865--62114914	25	2.0	25	92	0	82	48	2	0	50	1.12
62121973--62122036	31	2.0	33	82	11	80	42	0	1	56	1.09
62124646--62124701	29	2.1	28	81	15	66	17	53	10	17	1.72
62125137--62125181	15	3.1	14	84	9	54	0	55	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62129091--62129151	17	3.8	17	76	20	60	54	3	6	36	1.43
62129908--62129950	15	2.8	16	82	3	61	13	6	13	65	1.46
62130179--62130289	30	3.7	30	83	3	136	43	3	21	31	1.70
62130286--62130331	24	1.9	24	95	0	83	26	0	2	71	0.97
62130519--62130803	80	3.7	77	77	11	223	35	17	15	31	1.92
62130519--62131033	89	6.3	79	73	15	365	36	19	15	28	1.93
62130712--62131033	87	3.7	87	85	4	420	37	20	16	25	1.93
62131016--62131054	20	2.0	20	94	0	69	33	28	10	28	1.90
62130711--62131045	176	1.9	175	82	4	417	37	20	16	25	1.93
62131066--62131095	14	2.1	14	93	0	51	66	3	6	23	1.30
62143237--62143290	22	2.7	20	80	13	58	59	5	1	33	1.31
62143245--62143302	21	2.7	21	74	10	55	58	5	1	34	1.30
62143387--62143430	19	2.4	19	85	7	56	54	4	6	34	1.47
62144207--62144247	16	2.6	16	92	7	66	14	4	9	70	1.30
62144474--62144588	29	3.9	29	80	10	117	42	3	23	30	1.71
62144473--62144588	30	3.9	29	80	9	119	43	3	23	30	1.70
62144585--62144630	24	1.9	24	95	0	83	26	0	2	71	0.97
62145428--62145484	19	2.9	19	78	14	62	33	0	8	57	1.29
62145455--62145488	15	2.3	15	94	0	59	35	0	11	52	1.38
62145433--62145504	21	3.6	19	81	7	72	30	1	9	58	1.39
62145800--62145828	15	2.0	15	93	6	51	24	0	6	68	1.13
62153134--62153168	17	2.1	17	100	0	70	40	0	5	54	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62155263--62155323	26	2.3	25	81	15	70	75	11	3	9	1.16
62158618--62158660	16	2.7	16	100	0	86	62	16	6	13	1.51
62159193--62159226	16	2.2	16	89	5	52	50	8	11	29	1.69
62159220--62159253	10	3.3	10	88	8	50	76	0	0	23	0.79
62159431--62159492	17	3.8	17	76	16	51	37	6	1	54	1.36
62159625--62159653	3	9.7	3	100	0	58	34	0	0	65	0.93
62169154--62169907	72	10.1	73	86	5	879	32	16	17	33	1.92
62169306--62169464	84	1.9	85	92	1	266	32	15	16	35	1.90
62169909--62170944	81	12.7	79	70	17	272	30	16	18	34	1.94
62169909--62170124	79	2.8	78	82	6	249	30	17	17	34	1.93
62169987--62170900	169	5.5	165	81	9	802	30	17	18	34	1.94
62169666--62170245	246	2.4	243	83	6	697	30	17	18	33	1.94
62169664--62170288	244	2.6	239	81	9	694	30	17	18	33	1.94
62170157--62170317	75	2.1	76	82	6	193	29	18	19	32	1.96
62170349--62170491	75	1.9	75	84	2	189	28	19	20	30	1.97
62170424--62170589	91	1.8	91	83	5	219	28	18	17	35	1.93
62170491--62170900	81	5.2	81	81	5	453	30	16	18	34	1.93
62170493--62170900	158	2.6	158	86	4	577	30	16	18	34	1.93
62170506--62170988	81	6.1	79	79	8	375	30	16	18	34	1.93
62171473--62171516	16	2.8	16	92	0	79	65	15	6	11	1.44
62172054--62172087	16	2.2	16	89	5	52	50	8	11	29	1.69
62179788--62179841	25	2.2	25	96	0	99	48	20	5	25	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62183150--62183300	71	2.1	72	91	2	243	30	29	16	23	1.96
62183220--62183442	104	2.2	103	92	2	367	31	31	18	17	1.95
62183771--62183834	30	2.2	29	81	10	76	29	28	6	35	1.82
62183778--62183834	30	1.9	30	85	3	80	29	24	7	38	1.82
62187365--62188105	180	4.2	179	82	7	909	30	18	23	27	1.97
62187648--62187731	43	2.0	43	85	4	116	32	15	26	26	1.96
62187417--62188122	355	2.0	356	89	1	1096	30	18	23	26	1.98
62189189--62189238	26	2.0	24	88	7	73	64	6	0	30	1.18
62189209--62189267	21	2.8	21	78	12	59	69	8	0	22	1.15
62191856--62191910	25	2.2	26	83	9	69	10	3	10	74	1.19
62192954--62193008	25	2.2	26	83	9	69	10	3	10	74	1.19
62207489--62207542	23	2.4	22	78	9	56	25	9	9	55	1.61
62214506--62214546	21	2.0	21	90	0	64	29	21	29	19	1.98
62220963--62221218	122	2.1	122	83	6	333	39	15	9	35	1.80
62224052--62224081	15	2.0	15	93	0	51	36	0	0	63	0.95
62229820--62229892	36	2.0	36	97	0	137	26	13	15	45	1.83
62230391--62230533	68	2.1	68	97	0	268	27	11	32	27	1.92
62231320--62231364	19	2.4	18	86	13	65	66	0	33	0	0.92
62233801--62233887	21	4.0	23	80	10	92	37	25	21	14	1.92
62234259--62234316	15	3.8	15	88	2	89	51	12	0	36	1.39
62234551--62234601	24	2.2	23	86	6	68	1	33	3	60	1.26
62234623--62234654	5	6.2	5	96	3	55	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62234677--62234705	8	3.6	8	100	0	58	62	0	0	37	0.96
62239035--62239080	23	2.0	23	95	0	83	34	15	8	41	1.78
62241157--62241613	46	10.0	46	87	0	585	40	14	23	20	1.90
62247132--62247324	95	2.0	96	98	1	379	26	15	22	35	1.94
62249807--62249843	13	2.8	13	91	0	56	70	5	0	24	1.08
62250265--62250518	125	2.0	125	100	0	508	26	14	21	37	1.91
62253133--62253252	37	3.3	37	91	2	199	35	15	24	25	1.94
62270228--62270261	12	2.9	12	86	4	52	32	0	0	67	0.91
62270387--62270448	30	2.1	30	96	0	115	59	9	3	27	1.44
62271203--62271258	18	3.2	17	80	16	69	53	1	0	44	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250