genome.fa.s9.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  31  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9210853--9210904	21	2.5	21	100	0	104	55	17	7	19	1.65
9211351--9211683	171	1.9	171	88	1	506	38	23	12	25	1.90
9213812--9213837	13	2.0	13	100	0	52	23	7	23	46	1.78
9214606--9214638	16	2.1	17	88	11	52	60	3	0	36	1.12
9217002--9217053	25	2.0	26	96	3	97	19	7	19	53	1.68
9219827--9219859	17	2.0	17	88	5	50	60	0	0	39	0.97
9222433--9222489	28	2.0	28	100	0	114	29	10	7	52	1.62
9222915--9222946	13	2.4	14	94	5	57	25	9	0	65	1.22
9226069--9226174	43	2.5	43	87	4	153	24	18	30	26	1.98
9227004--9227032	13	2.1	14	93	6	51	55	10	0	34	1.34
9232152--9232272	9	13.6	9	71	12	72	33	1	20	43	1.62
9232169--9232244	36	2.1	36	92	0	125	34	1	18	46	1.58
9232202--9232329	44	3.0	43	88	6	204	33	0	20	46	1.51
9232313--9232342	13	2.3	13	94	0	51	40	0	10	50	1.36
9232226--9232407	100	1.8	99	90	3	294	33	0	18	48	1.48
9232285--9232431	56	2.7	54	87	4	208	34	0	17	48	1.47
9232326--9232407	43	1.9	43	89	0	128	32	0	17	50	1.46
9232391--9232416	9	2.9	9	100	0	52	23	0	23	53	1.46
9232561--9232589	15	1.9	15	100	0	58	58	13	0	27	1.36
9232811--9232901	36	2.5	37	75	22	104	51	1	9	37	1.42
9235867--9236462	114	5.2	115	79	5	534	35	22	15	26	1.94
9235874--9236394	114	4.6	116	81	8	543	36	22	14	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9235874--9236405	230	2.3	229	80	5	603	37	22	15	25	1.93
9237273--9237332	7	8.6	7	81	0	57	45	45	0	10	1.37
9237265--9237337	21	3.5	21	76	0	74	46	41	0	12	1.41
9237273--9237339	14	4.8	14	84	0	71	46	41	0	11	1.41
9237791--9238345	278	2.0	278	97	0	1049	37	14	10	37	1.81
9238413--9238569	41	3.9	41	85	5	219	22	22	21	32	1.98
9238413--9238581	81	2.1	82	86	3	234	22	23	21	33	1.98
9239750--9239793	14	3.1	14	83	0	61	31	43	0	25	1.55
9241327--9241427	28	3.5	28	71	7	94	15	11	8	63	1.51
9241309--9241430	59	2.1	59	98	0	235	18	13	8	59	1.58
9241434--9241477	21	2.1	21	100	0	88	15	27	4	52	1.63
9244876--9244934	29	2.0	29	90	0	91	61	3	0	35	1.13
9244880--9244943	29	2.2	29	80	0	74	57	7	0	34	1.27
9245548--9245589	19	2.2	19	83	8	50	66	0	7	26	1.17
9246749--9246785	18	2.1	18	89	0	56	37	2	2	56	1.28
9252679--9252852	48	3.6	48	82	3	215	32	20	22	24	1.98
9259508--9259605	27	3.5	28	90	2	135	26	13	28	31	1.94
9259536--9259618	27	3.0	27	87	5	96	30	12	25	32	1.92
9259508--9259619	28	4.0	27	83	6	98	28	12	25	33	1.92
9261528--9261565	18	2.1	19	90	5	60	34	15	0	50	1.45
9261752--9261862	41	2.7	42	80	5	118	34	26	16	23	1.95
9261752--9261862	42	2.7	42	77	8	120	34	26	16	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9261721--9261875	42	3.7	40	69	20	102	29	25	18	26	1.98
9262729--9262766	16	2.5	15	87	8	51	39	7	0	52	1.31
9265342--9265367	4	6.5	4	100	0	52	23	0	26	50	1.50
9266855--9267028	48	3.6	48	80	4	190	28	20	25	25	1.99
9283167--9283220	27	2.0	27	88	0	81	38	12	7	40	1.72
9295391--9295419	10	2.9	10	100	0	58	27	0	0	72	0.85
9300946--9300971	11	2.4	11	100	0	52	23	19	7	50	1.73
9301087--9301144	27	2.1	27	87	0	80	29	3	17	50	1.62
9302060--9302098	19	2.0	20	90	9	64	58	0	0	41	0.98
9305260--9305316	15	3.8	15	81	6	62	59	14	14	12	1.61
9305253--9305316	30	2.2	28	78	10	67	60	15	12	10	1.58
9308315--9308559	49	4.9	49	81	3	265	26	28	20	24	1.99
9308315--9308554	99	2.4	96	80	6	264	27	27	20	25	1.99
9310682--9310738	15	3.8	15	81	6	62	59	14	14	12	1.61
9310675--9310738	30	2.2	28	78	10	67	60	15	12	10	1.58
9321032--9321073	13	3.2	13	83	6	57	66	0	4	28	1.12
9329074--9329154	34	2.4	34	82	0	99	30	20	19	28	1.97
9329339--9329397	28	2.1	28	80	0	64	30	20	13	35	1.91
9329609--9329647	16	2.5	15	88	8	60	25	15	35	23	1.94
9331980--9332158	46	3.9	46	78	2	180	29	18	22	29	1.97
9336054--9336119	32	2.1	32	100	0	132	18	12	18	51	1.76
9338612--9338725	34	3.4	32	81	6	111	28	19	21	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9338879--9338940	14	4.4	14	77	0	61	22	20	22	33	1.97
9341200--9341244	21	2.1	22	83	4	56	44	0	17	37	1.49
9358416--9358482	34	2.0	34	94	2	118	58	5	5	29	1.46
9359796--9359847	17	3.1	16	81	10	50	30	1	3	63	1.23
9370549--9370607	21	2.9	21	85	10	77	15	0	6	77	0.96
9372539--9372646	42	2.5	42	83	7	128	25	19	25	29	1.98
9372542--9372646	43	2.5	42	80	7	122	26	19	24	29	1.98
9378737--9378764	14	2.0	14	100	0	56	50	14	14	21	1.78
9382774--9382837	25	2.6	25	82	5	67	39	9	20	31	1.84
9382803--9382862	31	1.9	31	83	6	77	35	6	21	36	1.80
9389231--9389286	11	5.5	11	71	16	57	35	12	19	32	1.89
9389220--9389286	20	3.3	20	93	0	116	34	11	20	32	1.90
9389336--9389454	24	4.9	24	89	6	170	29	20	22	27	1.98
9389648--9389710	31	2.0	31	93	0	108	36	15	23	23	1.94
9390701--9390866	83	2.0	83	91	0	269	20	16	18	44	1.87
9393226--9393335	17	6.6	17	69	11	66	31	25	17	25	1.97
9395264--9395302	18	2.2	18	86	9	53	48	17	7	25	1.74
9401130--9401318	102	1.9	101	93	1	324	44	6	15	33	1.71
9408212--9408246	6	5.8	6	100	0	70	51	14	0	34	1.42
9412589--9412613	3	8.3	3	100	0	50	68	0	32	0	0.90
9413957--9414005	24	2.0	24	92	0	80	28	18	8	44	1.78
9417797--9417843	24	2.0	24	87	4	69	74	2	23	0	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9418724--9418826	41	2.7	38	81	10	118	26	17	22	33	1.96
9418745--9418856	41	2.8	40	84	2	152	25	17	23	33	1.96
9439603--9439935	50	6.6	51	84	4	374	24	16	26	32	1.96
9439607--9439885	151	1.8	153	87	3	420	24	16	27	31	1.96
9450916--9451031	61	1.9	58	86	5	160	43	3	3	50	1.36
9456079--9456140	6	10.2	6	80	3	70	75	4	4	14	1.13
9459541--9459565	5	5.0	5	100	0	50	40	0	0	60	0.97
9472373--9472419	14	3.3	15	76	8	53	59	0	40	0	0.97
9475177--9475292	47	2.5	47	90	1	180	43	15	23	17	1.87
9481381--9481414	10	3.4	10	87	0	50	70	0	29	0	0.87
9481382--9481498	58	2.0	58	96	0	216	53	2	37	5	1.39
9481440--9481478	20	2.0	20	89	0	60	64	0	30	5	1.15
9481663--9481688	13	2.0	13	100	0	52	15	46	23	15	1.83
9489378--9489421	17	2.6	17	96	0	79	18	34	25	22	1.96
9492050--9492144	42	2.2	42	79	5	102	30	23	17	28	1.97
9492242--9492306	32	2.0	32	100	0	130	40	18	3	38	1.66
9516394--9516434	21	2.0	21	85	9	57	34	24	19	21	1.97
9516431--9516524	47	2.0	47	100	0	188	23	25	19	31	1.98
9517450--9517488	20	2.0	19	85	5	51	43	20	12	23	1.86
9517481--9517643	85	1.9	85	83	5	213	29	25	19	26	1.98
9520957--9521408	225	2.0	225	95	0	805	29	14	21	35	1.92
9521826--9521852	13	2.1	13	100	0	54	48	0	22	29	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9524129--9524182	7	7.7	7	95	0	81	0	9	27	62	1.25
9533459--9533550	29	3.1	30	81	4	100	34	16	22	26	1.95
9550680--9550785	54	2.0	54	96	0	194	36	13	27	22	1.91
9554110--9554357	134	1.9	133	83	5	297	32	20	22	24	1.98
9554105--9554351	45	5.5	45	72	7	162	31	20	22	25	1.98
9555695--9555889	3	65.7	3	71	6	101	26	7	5	61	1.44
9555981--9556022	20	2.0	21	90	4	68	19	4	2	73	1.12
9556027--9556065	15	2.6	14	84	8	51	28	15	0	56	1.40
9558983--9559011	13	2.1	14	93	6	51	55	0	3	41	1.17
9559483--9559518	15	2.4	15	95	0	63	30	11	2	55	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250