genome.fa.s9.2.7.7.80.10.50.1000.179.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  179  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56801231--56801264	16	2.0	18	88	11	54	38	0	0	61	0.96
56814779--56814838	17	3.6	17	68	8	52	6	16	3	73	1.18
56820420--56820445	1	26.0	1	100	0	52	100	0	0	0	0.00
56829290--56829352	33	2.0	32	87	6	92	46	9	0	44	1.36
56832368--56832446	28	2.8	28	84	7	106	34	11	25	29	1.91
56833787--56833830	6	7.5	6	92	7	65	15	0	0	84	0.63
56835000--56835025	12	2.2	12	100	0	52	76	0	0	23	0.78
56837972--56838048	23	3.3	23	92	3	136	31	25	20	22	1.98
56837979--56838045	24	2.8	24	95	2	118	31	26	20	20	1.98
56838274--56838312	18	2.2	17	86	13	53	46	20	0	33	1.51
56845322--56845397	23	3.3	23	96	0	143	31	26	21	21	1.98
56845620--56845658	18	2.2	17	86	13	53	46	20	0	33	1.51
56847024--56847074	26	2.0	26	84	3	68	64	3	0	31	1.11
56847036--56847084	26	2.0	24	88	8	71	63	6	0	30	1.19
56853085--56853121	16	2.3	16	95	0	65	29	29	8	32	1.86
56869447--56869493	20	2.4	19	86	10	67	63	2	2	31	1.18
56869622--56869666	23	1.9	24	81	4	56	53	8	0	37	1.32
56875108--56875152	3	15.0	3	100	0	90	66	0	0	33	0.92
56875251--56875430	3	59.3	3	67	11	73	60	2	8	29	1.38
56875256--56875360	13	8.0	13	71	14	58	62	1	9	25	1.36
56877066--56877288	43	4.9	44	73	13	157	27	21	19	31	1.97
56877120--56877347	95	2.4	96	81	4	248	29	20	17	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56877264--56877359	50	1.9	50	83	8	124	33	18	14	33	1.91
56886592--56886699	26	4.2	26	89	2	164	37	23	6	33	1.80
56888755--56888807	26	2.0	26	96	0	97	54	3	5	35	1.42
56889330--56889379	19	2.9	17	78	16	59	4	18	14	64	1.44
56892426--56892478	25	2.1	25	82	0	61	35	18	24	20	1.95
56892483--56892565	25	3.3	24	70	12	69	44	19	19	16	1.87
56893076--56893130	16	3.4	16	92	0	92	34	7	29	29	1.84
56893112--56893205	44	2.1	46	88	4	138	31	6	26	35	1.82
56893379--56893414	18	2.0	18	100	0	72	66	0	0	33	0.92
56897581--56897607	14	1.9	14	100	0	54	25	14	0	59	1.36
56899202--56899266	31	2.2	30	83	5	78	32	4	9	53	1.53
56899338--56899394	25	2.3	25	81	6	71	56	1	0	42	1.10
56903949--56904108	46	3.3	49	82	12	206	33	13	22	31	1.92
56904015--56904120	46	2.3	46	95	1	185	33	11	22	32	1.90
56904082--56904192	38	3.0	37	86	3	154	34	15	23	27	1.94
56905448--56905640	49	3.9	49	95	0	323	23	15	30	31	1.95
56908770--56909136	46	7.6	49	87	8	440	34	14	22	28	1.93
56908770--56909136	98	3.7	97	85	9	501	34	14	22	28	1.93
56908784--56909136	196	1.8	196	92	0	607	34	14	22	28	1.93
56909100--56909208	37	3.0	37	90	2	177	35	16	22	24	1.95
56913542--56913576	18	2.0	18	88	5	54	68	0	0	31	0.90
56914020--56914058	20	1.9	19	85	10	51	10	2	12	74	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56914251--56914450	45	4.5	45	85	1	276	24	28	15	32	1.95
56914265--56914430	89	1.9	89	93	0	287	26	29	14	29	1.95
56914475--56914830	78	4.6	78	90	1	570	24	23	18	32	1.97
56914598--56914803	37	5.4	37	63	17	114	23	23	19	33	1.97
56914950--56915348	78	5.1	78	88	0	586	24	23	19	32	1.97
56914950--56915348	156	2.6	156	93	1	649	24	23	19	32	1.97
56914475--56915495	519	2.0	520	94	0	1776	25	23	18	32	1.97
56923869--56923904	18	2.0	18	89	10	56	69	0	0	30	0.89
56924870--56924915	22	2.1	22	84	11	60	63	8	0	28	1.24
56925384--56925428	19	2.4	19	96	3	83	40	8	4	46	1.55
56925931--56925973	12	3.6	12	77	0	50	4	9	60	25	1.47
56926104--56926172	27	2.6	27	95	0	120	17	42	20	20	1.90
56933747--56933802	24	2.5	22	82	8	67	26	5	3	64	1.32
56935711--56935924	107	2.0	107	100	0	428	44	17	15	21	1.86
56936298--56936334	18	2.1	18	94	0	65	54	27	8	10	1.63
56939275--56939383	10	11.8	10	69	17	58	66	2	1	28	1.15
56939260--56939384	27	4.6	27	73	13	103	68	2	2	27	1.15
56939343--56939383	17	2.3	18	87	4	57	75	2	2	19	1.03
56939267--56939390	9	13.7	9	70	14	58	66	2	2	28	1.16
56939504--56939543	19	2.1	19	85	0	53	22	10	0	67	1.20
56939552--56939603	19	2.7	19	80	8	61	32	3	0	63	1.12
56939482--56939603	9	12.7	10	70	14	53	31	5	0	62	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56942802--56942847	24	2.0	23	86	4	65	56	4	4	34	1.39
56944706--56944753	23	2.1	23	88	0	69	20	14	10	54	1.70
56945995--56946116	61	2.0	61	83	0	154	44	9	4	41	1.57
56947660--56947691	14	2.2	15	94	5	57	50	6	12	31	1.65
56947849--56947891	15	3.1	14	83	9	52	55	9	2	32	1.44
56949387--56949473	21	4.0	23	80	10	92	37	25	21	14	1.92
56954358--56954390	16	2.0	17	88	5	50	42	0	21	36	1.53
56954806--56954845	13	2.9	14	85	7	55	62	0	10	27	1.27
56955799--56955839	21	2.0	21	100	0	82	48	0	9	41	1.36
56956119--56956200	26	3.2	26	92	0	146	32	7	24	35	1.83
56964224--56964399	88	2.0	88	98	0	343	30	10	7	50	1.66
56965182--56965231	20	2.5	20	96	0	91	38	14	6	42	1.70
56977424--56977477	6	7.9	7	84	10	51	37	0	1	61	1.07
56977421--56977476	15	4.0	15	76	15	50	35	0	3	60	1.14
56977453--56977479	6	4.5	6	100	0	54	29	0	0	70	0.88
56981104--56981344	132	1.8	132	82	2	315	35	16	17	30	1.93
56983933--56983958	4	6.5	4	100	0	52	23	0	0	76	0.78
56989199--56989235	19	1.9	19	100	0	74	21	16	16	45	1.84
56991759--56991830	5	14.8	5	82	15	89	80	0	18	1	0.78
56991763--56991829	14	4.9	14	77	18	79	79	0	19	1	0.82
56991761--56991825	8	8.6	7	74	24	53	80	0	18	1	0.80
56993036--56993874	132	6.4	129	81	4	871	29	18	25	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56993048--56993874	260	3.2	256	87	6	1031	29	18	25	26	1.98
56993863--56994444	44	13.2	44	87	0	788	28	14	31	25	1.95
56996349--56996375	13	2.1	13	100	0	54	33	0	7	59	1.25
56997681--56997981	131	2.3	131	76	5	295	28	19	16	34	1.94
57000613--57000654	3	13.7	3	85	14	59	30	2	2	64	1.19
57001428--57001456	15	1.9	15	100	0	58	20	20	27	31	1.98
57003690--57003728	19	2.1	19	100	0	78	33	0	46	20	1.51
57005703--57005818	61	1.9	61	83	5	153	47	6	11	34	1.66
57005703--57005822	62	2.0	61	83	5	152	48	6	10	34	1.64
57006845--57007000	77	2.0	77	100	0	312	30	16	17	35	1.92
57009243--57009331	28	3.1	28	70	19	74	53	12	13	20	1.71
57009600--57009637	20	1.9	20	94	0	67	52	10	0	36	1.36
57009549--57009698	59	2.5	58	82	4	158	44	10	4	41	1.59
57011524--57011574	25	2.0	25	82	14	61	17	5	21	54	1.63
57012499--57012535	18	2.0	20	84	10	51	51	2	5	40	1.39
57012620--57012679	20	2.8	21	85	10	68	40	8	0	51	1.32
57013126--57013165	20	2.0	20	85	9	55	32	0	0	67	0.91
57013130--57013171	20	2.0	21	81	9	50	35	0	2	61	1.09
57017210--57017244	17	2.1	17	88	0	52	31	5	34	28	1.81
57020453--57020482	12	2.4	13	94	5	53	3	30	0	66	1.07
57022604--57022642	20	2.0	20	94	0	69	43	5	2	48	1.38
57025715--57025752	4	9.2	4	86	11	51	76	0	2	21	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57030362--57030396	17	2.0	18	88	5	54	60	8	11	20	1.57
57030572--57030608	3	12.3	3	100	0	74	67	0	0	32	0.91
57030714--57030743	7	4.3	7	100	0	60	56	0	0	43	0.99
57030827--57030865	19	2.2	18	86	9	53	69	0	2	28	1.02
57030978--57031031	24	2.2	24	83	6	65	61	1	9	27	1.37
57031097--57031197	47	2.2	44	77	17	102	62	1	4	30	1.27
57031273--57031312	19	2.0	20	90	4	64	60	0	10	30	1.30
57032790--57032970	83	2.2	82	84	4	231	29	18	17	34	1.94
57032899--57033362	119	3.9	119	92	2	749	33	19	14	33	1.91
57032899--57033363	237	2.0	236	95	1	833	33	19	14	33	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250