genome.fa.s9.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  150  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48463343--48463450	26	4.2	26	93	0	189	32	7	24	36	1.83
48465235--48465521	137	2.1	137	94	0	493	24	18	24	32	1.97
48466916--48466961	22	2.1	22	91	0	74	6	34	19	39	1.78
48475260--48475397	27	5.1	27	75	3	98	39	21	23	15	1.91
48494010--48494094	43	2.0	43	90	0	134	30	24	18	25	1.98
48496234--48496313	39	2.1	39	97	0	151	17	17	22	42	1.89
48506471--48506501	15	2.0	16	93	6	55	51	3	0	45	1.17
48507932--48507979	24	2.1	24	81	11	57	60	8	0	31	1.26
48508167--48508233	21	3.0	23	72	21	63	64	1	5	28	1.26
48508200--48508245	15	2.9	15	90	6	65	67	0	6	26	1.15
48509213--48509302	32	2.8	29	78	17	90	24	1	7	66	1.25
48511289--48511336	21	2.3	22	85	7	64	31	2	4	62	1.26
48513557--48513664	26	4.2	26	93	0	189	32	7	24	36	1.83
48517845--48517888	21	2.0	22	86	4	63	34	13	2	50	1.55
48520071--48520103	17	1.9	17	93	0	57	27	21	3	48	1.64
48520190--48520229	19	2.2	18	86	13	55	30	22	0	47	1.52
48520392--48520477	21	3.9	23	80	10	90	37	25	22	15	1.93
48520854--48520891	15	2.5	15	95	0	67	50	10	0	39	1.37
48521025--48521053	10	2.9	10	100	0	58	10	27	20	41	1.85
48521618--48521663	15	2.8	17	80	16	60	6	26	8	58	1.52
48521835--48521889	18	3.1	17	78	17	58	69	3	0	27	1.05
48524588--48524718	55	2.4	54	88	5	185	29	29	19	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48527525--48527577	23	2.4	22	76	20	56	9	18	1	69	1.25
48530701--48530756	29	1.9	29	88	0	85	25	26	16	32	1.96
48531785--48531846	31	2.1	29	85	11	81	37	12	25	24	1.91
48532427--48532453	2	13.5	2	100	0	54	0	0	48	51	1.00
48536807--48536904	25	3.8	25	90	6	151	28	23	22	25	1.99
48540838--48541029	58	3.3	58	81	3	181	35	9	21	32	1.87
48541047--48541906	69	12.6	69	73	6	359	23	20	22	33	1.97
48541109--48541900	138	5.8	138	74	5	541	22	20	22	33	1.97
48546093--48546217	41	3.0	41	74	6	126	30	26	16	27	1.96
48546186--48546299	48	2.4	49	80	5	117	32	23	16	27	1.96
48546236--48546343	48	2.2	48	85	8	139	29	26	16	26	1.97
48549828--48549885	23	2.4	25	82	8	75	39	15	24	20	1.91
48554152--48554193	21	2.0	21	100	0	84	33	23	9	33	1.87
48554502--48554578	8	9.6	8	68	14	52	41	0	1	57	1.07
48554547--48554578	5	6.6	5	92	7	57	40	0	0	59	0.97
48554631--48554660	5	6.2	5	92	7	53	83	0	16	0	0.65
48554631--48554657	14	1.9	14	100	0	54	85	0	14	0	0.61
48555348--48555439	37	2.5	38	81	11	111	43	1	22	32	1.61
48568510--48568548	19	2.1	19	85	9	53	41	0	2	56	1.13
48568509--48568541	17	1.9	17	88	11	50	36	0	3	60	1.12
48571533--48571566	17	2.0	17	88	0	50	52	0	0	47	1.00
48578877--48578931	28	2.0	28	85	7	76	52	9	0	38	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48579225--48579283	32	1.9	30	86	6	82	45	3	3	47	1.36
48579225--48579290	32	2.2	30	83	8	80	46	3	3	46	1.33
48579263--48579320	22	2.8	22	77	15	70	48	3	0	48	1.18
48580177--48580211	16	2.2	16	100	0	70	40	0	14	45	1.45
48583698--48583727	2	15.0	2	92	0	51	53	0	0	46	1.00
48587480--48587520	18	2.2	19	86	4	57	58	0	0	41	0.98
48588388--48588435	23	2.1	23	84	7	62	37	0	2	60	1.09
48591671--48591764	40	2.4	40	82	8	122	37	36	11	14	1.83
48592129--48592162	17	1.9	18	88	5	52	11	44	32	11	1.77
48593310--48593475	48	3.5	48	87	1	235	26	28	18	26	1.98
48602584--48602633	11	4.2	12	78	9	50	48	0	2	50	1.12
48605035--48605091	20	2.8	20	97	2	105	17	31	40	10	1.84
48606311--48606688	48	7.9	48	81	2	375	23	29	18	27	1.98
48606310--48606692	143	2.7	143	84	2	464	24	29	18	27	1.98
48616618--48616660	15	2.8	15	82	10	52	44	2	2	51	1.27
48616557--48616744	61	3.1	61	69	17	201	42	2	7	48	1.43
48616738--48616779	15	2.7	16	82	14	52	45	0	2	52	1.13
48616547--48616776	120	1.9	120	99	0	451	41	2	6	49	1.42
48616729--48616770	15	2.9	15	82	10	52	47	0	0	52	1.00
48616905--48617014	45	2.6	43	79	11	120	32	29	5	32	1.80
48616995--48617062	16	4.2	16	94	0	118	35	36	0	27	1.58
48617548--48617919	48	7.8	48	75	7	204	23	29	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48617545--48617929	144	2.7	144	81	4	461	24	28	17	28	1.98
48617595--48617919	48	6.8	48	77	5	282	24	28	18	29	1.98
48623879--48623935	24	2.3	25	93	3	98	59	17	0	22	1.37
48625264--48625305	9	4.8	9	79	2	50	59	0	0	40	0.97
48625273--48625316	19	2.4	18	84	3	52	63	0	0	36	0.95
48625273--48625316	18	2.4	18	85	11	54	63	0	0	36	0.95
48625259--48625319	27	2.2	28	82	8	81	63	0	0	36	0.94
48626641--48626686	24	1.9	24	86	0	65	43	4	17	34	1.69
48627147--48627208	30	2.1	30	84	3	90	54	4	16	24	1.61
48633859--48633991	69	1.9	70	90	1	214	32	14	16	36	1.89
48635379--48635830	47	9.6	47	94	0	769	33	8	29	29	1.86
48661483--48661539	5	10.6	5	75	20	53	7	17	0	75	1.02
48662083--48662245	63	2.6	63	79	3	195	22	20	29	27	1.98
48673885--48673928	16	3.1	16	69	30	53	34	29	18	18	1.94
48676284--48676811	49	10.9	49	92	2	874	32	7	29	30	1.85
48676284--48676811	96	5.5	96	94	0	880	32	7	29	30	1.85
48678039--48678071	13	2.6	13	90	4	50	39	0	12	48	1.40
48678351--48678375	5	5.0	5	100	0	50	40	0	0	60	0.97
48681056--48681134	37	2.1	37	88	0	113	26	31	17	24	1.97
48681253--48681978	47	15.3	47	95	1	1281	29	30	8	31	1.87
48681253--48681978	143	5.1	143	96	1	1307	29	30	8	31	1.87
48681253--48681985	96	7.8	91	95	2	1092	29	30	8	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48687539--48687568	14	2.1	15	93	6	53	20	3	0	76	0.92
48690496--48690534	13	3.1	13	88	3	53	41	0	10	48	1.37
48694911--48694961	21	2.4	22	87	12	79	60	5	1	31	1.31
48695055--48695091	16	2.3	17	81	13	51	59	0	2	37	1.12
48704019--48704102	34	2.5	34	86	0	114	27	23	27	21	1.99
48711428--48711468	14	2.9	15	75	10	50	60	7	2	29	1.36
48713178--48713222	18	2.5	18	85	7	56	48	0	4	46	1.22
48713832--48713870	20	2.0	20	84	0	51	58	7	0	33	1.26
48719703--48719888	104	1.8	105	89	3	288	51	5	3	39	1.42
48724005--48724098	40	2.4	41	78	14	103	69	1	8	21	1.22
48735437--48735569	50	2.7	50	87	3	180	24	15	30	29	1.96
48739065--48739197	50	2.7	50	87	3	180	24	16	29	29	1.97
48742609--48742802	47	4.1	47	89	0	280	32	10	29	27	1.90
48742638--48742709	22	3.1	22	64	24	58	33	13	29	23	1.93
48742772--48743052	48	5.8	48	92	3	483	36	6	26	30	1.81
48742772--48743092	144	2.2	143	87	5	416	35	7	27	29	1.84
48743198--48743306	37	2.9	37	94	0	182	22	18	31	27	1.97
48744568--48744919	40	8.8	40	94	1	562	24	21	28	24	1.99
48751504--48751569	23	2.8	24	70	21	66	21	9	27	42	1.83
48752611--48752872	129	2.0	129	94	2	465	54	9	6	28	1.59
48756804--48756876	38	1.9	38	83	5	94	35	17	17	28	1.93
48757009--48757075	22	3.0	22	70	19	59	34	22	16	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48758611--48758783	91	1.9	91	84	2	231	38	14	20	27	1.91
48767815--48767873	28	2.1	28	100	0	118	27	3	20	49	1.65
48767826--48767880	28	2.0	26	86	6	74	34	3	16	45	1.65
48770141--48770187	24	2.0	24	91	0	76	14	34	4	46	1.64
48770142--48770194	24	2.2	24	82	0	70	15	39	3	41	1.65
48776487--48776539	27	2.0	27	85	7	72	30	18	20	30	1.97
48777895--48777941	24	2.0	24	91	0	76	14	38	4	42	1.66
48782887--48783659	268	3.0	252	89	6	1190	31	10	19	38	1.86
48785299--48785390	38	2.3	38	81	9	103	33	22	15	28	1.94
48787178--48787222	23	2.0	23	86	0	63	33	17	24	24	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250