genome.fa.s9.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  138  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44653594--44654857	395	3.2	389	79	11	1321	33	18	16	31	1.93
44654225--44654689	75	6.0	78	84	6	518	32	19	15	32	1.93
44654705--44654864	75	2.2	75	89	2	243	33	18	17	30	1.94
44654546--44654857	165	1.9	164	85	3	428	32	18	15	33	1.93
44665056--44665112	17	3.4	17	85	4	71	50	5	12	31	1.62
44665715--44665746	15	2.0	17	88	11	50	62	6	0	31	1.20
44666257--44666298	11	3.9	11	75	6	50	66	0	33	0	0.92
44666455--44666495	22	1.9	22	85	5	57	73	4	17	4	1.19
44666748--44666784	19	1.9	19	94	0	65	2	0	40	56	1.13
44670364--44670416	24	2.2	24	79	0	61	18	47	3	30	1.67
44671779--44671821	19	2.3	19	84	11	61	32	6	0	60	1.23
44672876--44672951	24	3.2	24	76	9	75	52	2	3	40	1.34
44673202--44673232	15	2.1	15	93	0	53	51	0	16	32	1.44
44673298--44673396	46	2.2	46	82	14	116	32	6	4	57	1.42
44675334--44675412	34	2.3	35	82	10	92	31	6	13	48	1.68
44678708--44678858	76	2.0	76	97	0	284	19	17	15	47	1.82
44680338--44680377	19	2.1	19	100	0	80	27	5	15	52	1.63
44681630--44681668	20	2.0	20	84	0	51	12	12	23	51	1.74
44683034--44683088	28	2.0	28	96	0	101	32	32	20	14	1.92
44683838--44683993	42	3.7	42	80	1	161	44	15	23	16	1.85
44683863--44683929	21	3.2	21	68	8	64	43	14	25	16	1.86
44683919--44683971	21	2.5	21	71	0	52	49	15	18	16	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44687694--44687749	26	2.2	25	81	6	67	50	0	3	46	1.19
44701812--44701854	21	2.0	21	90	0	68	23	20	11	44	1.84
44704783--44704909	51	2.5	51	75	13	134	59	6	5	28	1.44
44707169--44707228	30	2.0	30	90	0	93	30	25	5	40	1.77
44708495--44708575	24	3.4	24	79	3	101	33	12	22	32	1.91
44713365--44713442	37	2.1	37	86	6	106	30	12	11	44	1.78
44716629--44716661	15	2.1	16	94	5	59	42	9	12	36	1.74
44719131--44719240	38	2.8	39	76	6	116	30	27	20	21	1.98
44719852--44719887	18	2.1	18	89	5	56	33	25	0	41	1.55
44720313--44720356	18	2.4	18	85	7	54	13	6	4	75	1.17
44720326--44720369	23	1.9	23	81	9	54	20	6	4	68	1.31
44720820--44720867	20	2.4	20	74	22	55	43	18	0	37	1.51
44734132--44734229	27	3.5	28	90	2	135	26	13	28	31	1.94
44734160--44734242	27	3.0	27	87	5	96	30	12	25	32	1.92
44734132--44734243	28	4.0	27	83	6	98	28	12	25	33	1.92
44736614--44736651	14	2.8	14	92	4	60	13	23	36	26	1.91
44741379--44741417	19	2.2	19	86	9	55	30	28	0	41	1.57
44746000--44746141	42	3.3	43	87	6	182	30	26	16	25	1.97
44746000--44746146	44	3.4	44	85	9	162	31	26	16	25	1.96
44749217--44749424	53	4.0	52	76	9	192	26	22	13	37	1.91
44749210--44749399	106	1.8	103	85	7	267	26	22	13	37	1.91
44749210--44749420	103	2.0	104	83	6	266	26	21	13	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44758980--44759029	24	2.1	24	100	0	100	20	32	0	48	1.50
44764136--44764224	24	3.8	22	78	11	79	20	21	17	40	1.92
44768649--44768717	24	2.9	24	86	0	93	23	18	14	43	1.87
44768761--44768814	24	2.3	23	84	9	65	14	24	25	35	1.94
44773696--44773794	45	2.2	45	87	1	135	41	22	10	26	1.85
44779048--44779455	27	15.1	27	75	5	157	37	20	9	32	1.85
44779038--44779280	108	2.3	107	81	2	263	36	21	9	32	1.86
44779042--44779470	54	8.0	54	74	4	222	37	20	9	31	1.85
44779262--44779439	81	2.2	81	81	6	191	40	19	9	30	1.84
44779314--44779470	81	2.0	80	81	8	185	38	18	10	31	1.85
44779460--44779647	27	7.0	27	87	0	259	34	19	21	24	1.96
44779849--44779918	25	2.8	25	91	0	104	28	25	21	24	1.99
44780137--44780219	31	2.7	31	94	3	143	30	16	25	27	1.97
44782582--44782650	27	2.6	27	85	0	93	21	23	21	33	1.97
44789781--44789864	7	12.1	7	72	22	63	39	1	1	58	1.14
44789790--44789823	16	2.1	17	88	5	52	38	0	2	58	1.13
44789745--44789866	20	5.9	21	70	17	85	34	3	1	60	1.23
44789781--44789865	17	4.9	17	71	24	63	38	1	1	58	1.13
44789850--44789986	22	6.2	21	70	20	77	32	6	1	59	1.32
44789847--44789947	44	2.3	44	80	13	109	35	4	0	58	1.26
44790605--44790638	16	2.1	17	88	5	52	23	11	8	55	1.63
44793998--44794037	19	2.1	19	86	9	55	32	20	5	42	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44799491--44799602	43	2.6	43	84	0	152	29	23	16	30	1.96
44801372--44801437	34	1.9	34	96	0	123	24	22	24	28	1.99
44803977--44804604	315	2.0	320	97	2	1196	28	19	19	32	1.96
44809792--44810236	119	3.7	119	91	0	694	34	16	18	30	1.93
44810184--44810429	83	3.0	83	84	2	314	35	19	18	26	1.95
44810184--44810416	84	2.8	83	86	1	297	36	19	18	25	1.95
44811915--44811955	16	2.4	17	88	8	57	41	0	2	56	1.13
44811924--44812001	36	2.3	31	79	18	84	34	2	1	61	1.18
44811924--44811982	20	3.2	18	86	11	75	35	1	1	61	1.16
44811909--44811998	20	4.5	21	76	18	68	37	2	1	58	1.17
44811924--44811982	3	19.0	3	74	19	50	35	1	1	61	1.16
44811949--44812062	44	2.7	43	75	20	116	35	6	0	57	1.29
44812720--44812753	16	2.1	17	88	5	52	23	11	8	55	1.63
44816114--44816153	19	2.1	19	86	9	55	32	20	5	42	1.73
44818258--44818353	40	2.4	41	84	6	117	29	27	16	27	1.97
44823690--44824026	170	2.0	170	92	0	566	30	18	14	37	1.90
44832127--44832236	34	3.2	33	73	22	91	21	2	6	69	1.24
44832171--44832228	26	2.3	26	85	8	75	24	1	6	67	1.25
44832185--44832241	26	2.2	26	90	6	89	22	0	5	71	1.05
44832195--44832241	16	2.8	17	76	23	55	23	0	4	72	1.02
44832223--44832262	20	2.0	21	85	14	57	20	2	5	72	1.15
44835794--44835841	23	2.0	23	84	12	60	35	8	10	45	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44835789--44835834	21	2.2	22	84	7	60	36	8	8	45	1.66
44835983--44836037	25	2.2	26	83	9	69	25	9	7	58	1.55
44837919--44837976	19	3.1	18	73	24	57	34	0	3	62	1.12
44841920--44841990	23	3.1	23	95	0	133	40	4	9	45	1.57
44854798--44854857	17	3.5	17	74	21	63	65	0	1	33	1.03
44855338--44855470	18	7.5	18	83	5	164	36	11	10	41	1.75
44855338--44855479	35	4.0	35	92	2	212	37	11	9	40	1.75
44855865--44856217	83	4.2	83	94	0	589	27	20	20	32	1.97
44856141--44856737	119	5.0	119	94	0	1005	29	19	17	34	1.94
44856726--44856905	44	4.1	44	75	8	186	27	24	16	31	1.96
44856733--44856900	88	1.9	87	84	3	221	27	24	16	30	1.97
44857773--44857820	20	2.5	20	86	10	64	4	10	0	85	0.73
44857781--44857818	16	2.4	16	90	0	58	2	10	0	86	0.66
44863585--44863664	37	2.2	36	81	2	88	58	1	6	33	1.31
44864103--44864235	18	7.5	18	86	5	182	36	12	10	39	1.78
44864103--44864244	35	4.0	35	91	2	221	37	13	9	39	1.78
44878788--44878817	14	2.1	14	93	0	51	16	0	36	46	1.47
44891840--44891873	16	2.0	17	88	11	52	41	0	5	52	1.25
44914813--44914867	26	2.2	26	96	3	103	63	0	0	36	0.95
44917080--44917251	93	1.8	93	93	0	299	28	29	20	21	1.98
44917073--44917248	46	3.8	46	79	12	207	29	28	20	21	1.98
44929442--44929592	27	5.6	27	81	7	171	29	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44940081--44940132	18	3.1	17	76	10	54	42	3	5	48	1.45
44940536--44940573	18	2.1	18	95	0	67	50	13	5	31	1.63
44948221--44948455	48	5.0	49	74	13	222	28	19	23	28	1.98
44948424--44948500	38	2.0	38	97	0	145	32	25	19	22	1.97
44951225--44951276	26	2.0	26	100	0	104	19	15	11	53	1.71
44953071--44953219	59	2.5	60	81	5	151	24	18	18	38	1.93
44971372--44971427	21	2.7	21	80	0	58	23	25	32	19	1.98
44975109--44975137	14	2.0	15	93	6	51	24	0	20	55	1.44
44976275--44976395	41	2.9	41	75	11	111	26	19	25	28	1.98
44983138--44983166	14	2.0	15	93	6	51	27	0	20	51	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250