Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  142  of  250  ( 29906 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46023219--46023289
3
23.7
3
100
0
142
66
0
0
33
0.92
46027706--46027769
24
2.7
24
78
9
60
31
6
14
48
1.68
46027923--46027957
3
11.7
3
100
0
70
68
0
0
31
0.90
46033444--46033499
20
2.8
20
83
2
69
33
23
16
26
1.95
46046199--46046589
196
2.0
196
98
0
755
29
12
20
37
1.89
46050194--46050269
28
2.7
28
74
10
73
25
13
21
40
1.89
46050198--46050317
57
2.1
58
83
10
158
25
10
20
43
1.84
46060036--46060161
43
2.9
44
80
10
143
24
16
24
34
1.96
46062847--46062877
16
1.9
16
93
0
53
41
0
25
32
1.56
46065718--46065748
15
2.0
16
93
6
55
83
3
12
0
0.75
46069181--46069215
17
2.1
17
89
5
54
20
5
20
54
1.64
46072212--46072342
69
1.9
70
91
1
219
29
25
17
26
1.97
46073332--46073366
17
2.1
17
89
5
54
22
2
0
74
0.95
46085697--46085734
19
2.0
19
85
10
51
68
0
10
21
1.19
46090825--46091011
21
9.0
21
71
10
132
19
22
15
42
1.88
46090814--46090967
42
3.7
42
77
10
181
19
20
14
44
1.86
46093540--46093723
71
2.5
71
87
8
255
25
27
24
22
2.00
46095925--46095977
27
1.9
27
84
3
70
71
5
0
22
1.06
46098489--46098619
44
3.0
44
87
0
190
43
11
19
25
1.84
46098720--46098931
99
2.1
101
85
3
277
37
16
23
22
1.93
46099372--46099401
9
3.4
9
95
4
53
10
53
13
23
1.69
46100361--46100413
3
17.7
3
80
7
63
30
5
1
62
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46100447--46100495
24
2.1
23
82
14
57
38
8
2
51
1.43
46120824--46120851
1
28.0
1
100
0
56
100
0
0
0
0.00
46122102--46122240
44
3.2
44
66
15
124
28
25
21
24
1.99
46122134--46122271
43
3.2
43
67
8
134
28
21
23
25
1.99
46122088--46122399
88
3.6
88
87
3
418
30
22
23
23
1.99
46122146--46122284
44
3.2
43
66
11
120
25
21
24
28
1.99
46122441--46122857
44
9.6
44
71
12
209
30
20
23
26
1.98
46122380--46122769
174
2.3
169
84
7
509
31
20
22
25
1.98
46122443--46122814
87
4.3
86
73
10
301
30
21
22
25
1.99
46122443--46122818
43
8.7
44
72
13
228
30
21
23
25
1.99
46123249--46123278
9
3.4
9
95
4
53
10
53
13
23
1.69
46124237--46124289
3
17.7
3
80
7
63
30
5
1
62
1.29
46124323--46124371
24
2.1
23
82
14
57
38
8
2
51
1.43
46126347--46126391
22
2.0
22
100
0
90
46
8
22
22
1.79
46132938--46132982
22
2.0
22
86
0
63
11
26
28
33
1.91
46133476--46133540
32
2.0
32
96
0
121
29
9
6
55
1.56
46137296--46137390
5
17.8
5
74
18
68
75
2
3
18
1.03
46137335--46137425
17
5.1
17
78
7
76
69
1
3
26
1.11
46137297--46137367
21
3.3
21
80
9
90
78
2
2
15
0.98
46137370--46137583
3
70.7
3
75
5
180
60
0
7
31
1.31
46138635--46138672
18
2.2
17
86
13
51
10
0
39
50
1.37
46139108--46140147
44
22.8
45
69
13
339
29
22
16
31
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46139108--46139508
96
4.4
94
74
9
321
28
22
16
32
1.96
46139107--46139368
140
1.9
140
84
4
350
26
23
17
31
1.97
46139108--46139508
180
2.2
185
83
3
499
28
22
16
32
1.96
46139894--46140334
181
2.5
175
84
4
537
29
21
15
33
1.94
46142490--46142561
28
2.6
29
80
12
87
23
12
34
29
1.92
46149775--46149812
16
2.4
16
81
0
58
50
15
18
15
1.79
46150026--46150097
28
2.6
29
80
12
87
23
12
34
29
1.92
46151136--46151169
18
1.9
18
88
5
52
41
11
17
29
1.85
46151842--46151894
21
2.5
21
82
11
65
0
16
0
83
0.66
46151849--46151897
16
3.0
16
85
11
64
0
14
0
85
0.59
46151842--46151894
11
4.8
11
84
11
65
0
16
0
83
0.66
46151842--46151897
10
5.4
10
82
6
67
0
16
0
83
0.64
46152416--46152440
9
2.8
9
100
0
50
8
0
0
92
0.40
46157469--46157565
16
5.9
16
77
11
72
72
1
3
23
1.06
46157472--46157733
3
88.3
3
74
9
198
62
1
6
29
1.30
46158357--46158395
9
4.7
9
90
9
57
71
0
28
0
0.86
46159766--46159847
31
2.7
30
83
5
103
35
6
9
48
1.61
46159767--46159858
30
3.1
29
75
10
87
33
5
9
51
1.58
46161150--46161270
28
4.2
28
80
8
129
38
2
19
40
1.65
46161160--46161270
56
2.0
56
84
7
145
38
2
18
40
1.64
46161465--46161769
127
2.4
127
85
4
415
37
18
16
27
1.92
46166787--46166969
64
3.0
61
81
10
187
50
9
6
33
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46168921--46168992
19
3.6
19
76
16
67
65
1
1
31
1.10
46169732--46169790
29
2.1
29
87
3
84
50
8
8
32
1.63
46172806--46172872
16
4.2
16
73
7
55
50
1
16
31
1.54
46173068--46173144
39
2.0
39
82
5
93
45
0
0
54
0.99
46173058--46173144
40
2.1
41
81
10
97
45
0
0
54
1.00
46173451--46173475
11
2.3
11
100
0
50
0
0
8
92
0.40
46179210--46179256
22
2.1
22
84
7
60
65
0
0
34
0.93
46179210--46179250
18
2.3
18
87
4
57
65
0
0
34
0.93
46185543--46185572
14
2.1
14
93
0
51
50
6
3
40
1.45
46195158--46195194
16
2.3
16
86
13
58
40
0
0
59
0.97
46195264--46195337
36
2.1
36
75
9
73
59
5
0
35
1.20
46196006--46196077
33
2.2
33
92
0
126
33
20
19
26
1.97
46196363--46196419
29
2.0
29
96
0
105
28
17
26
28
1.98
46199444--46199508
24
2.8
25
81
11
84
33
15
23
27
1.95
46217047--46217088
22
1.9
22
85
9
59
50
11
7
30
1.66
46219434--46219934
250
2.0
250
100
0
1002
36
15
16
31
1.90
46223134--46223174
6
6.8
6
97
0
64
43
0
17
39
1.49
46227443--46227626
92
2.0
92
100
0
368
25
13
29
32
1.93
46229243--46229568
162
2.0
163
99
0
645
34
6
15
43
1.73
46230394--46230622
115
2.0
115
100
0
458
34
9
11
44
1.73
46229910--46230568
324
2.0
328
95
3
1200
36
6
12
44
1.68
46232475--46232578
55
1.9
55
91
0
172
17
11
17
53
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46232549--46232713
82
2.0
82
98
0
321
23
17
16
41
1.89
46233577--46233675
49
2.0
49
100
0
198
34
8
18
39
1.80
46234124--46234214
45
2.0
45
97
0
173
38
9
6
45
1.64
46238222--46238425
41
4.8
42
78
7
196
25
16
26
31
1.96
46238223--46238425
86
2.4
86
87
0
280
26
16
26
31
1.96
46241645--46241803
42
3.7
42
75
7
124
32
27
18
22
1.97
46242388--46242492
42
2.5
42
92
1
167
20
42
19
18
1.89
46251262--46251464
41
4.8
41
74
8
165
24
18
27
29
1.98
46251263--46251468
86
2.4
86
85
3
272
25
18
26
30
1.98
46259965--46260135
38
4.5
37
80
4
144
33
25
19
21
1.97
46259997--46260125
38
3.4
38
87
0
186
33
24
20
22
1.97
46267598--46267771
38
4.5
38
85
2
206
31
25
22
21
1.98
46267598--46267787
76
2.5
78
82
3
240
31
25
21
22
1.98
46271382--46271421
21
1.9
21
89
0
62
12
5
22
60
1.52
46271729--46272028
151
2.0
150
95
1
539
34
14
20
30
1.92
46276749--46276860
32
3.5
31
79
12
104
33
1
15
49
1.55
46276749--46276852
31
3.2
31
78
11
93
32
1
16
49
1.57
46276803--46276892
34
2.6
34
87
1
117
33
4
17
44
1.69
46279617--46279694
29
2.7
28
84
11
104
25
15
30
28
1.96
46279647--46279973
173
1.9
174
93
0
566
29
14
24
31
1.94
46283716--46284255
47
11.4
47
93
1
891
33
8
28
29
1.87
46283716--46284255
190
2.9
189
93
1
904
33
8
28
29
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46283716--46284255
237
2.3
237
95
0
954
33
8
28
29
1.87
46284374--46284452
37
2.1
37
88
0
113
24
17
31
26
1.97
46286292--46286330
16
2.3
18
82
8
55
25
0
23
51
1.49
46289386--46289420
18
1.9
18
94
0
61
54
8
5
31
1.54
46297267--46297384
41
2.9
41
91
2
184
29
13
30
26
1.94
46297247--46297404
41
3.9
41
82
6
180
30
14
27
27
1.95
46300857--46300952
44
2.2
45
83
9
117
31
17
7
43
1.76
46308128--46308192
6
10.5
6
79
9
51
13
6
3
76
1.09
46308239--46308277
18
2.2
17
86
4
51
61
5
5
28
1.39
46311495--46311721
38
5.9
38
87
1
310
22
21
25
30
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250