genome.fa.s9.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  109  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35018127--35018208	36	2.3	36	93	0	146	34	7	18	40	1.78
35019734--35019828	37	2.6	37	82	0	109	41	16	12	29	1.86
35021306--35021359	26	2.1	26	92	0	90	37	27	9	25	1.87
35026606--35026688	41	2.0	41	97	0	157	40	14	13	31	1.84
35037084--35037123	21	1.9	21	84	0	53	30	2	22	45	1.66
35037709--35037858	43	3.5	42	81	7	133	28	16	25	30	1.97
35040741--35040918	27	6.6	27	83	3	205	26	15	28	29	1.96
35040742--35040897	82	1.9	81	88	3	233	26	15	28	29	1.96
35040738--35040918	82	2.2	81	83	2	229	27	15	27	29	1.96
35048718--35048896	27	6.6	27	81	4	189	27	15	27	29	1.96
35048718--35048896	56	3.3	53	82	4	196	27	15	27	29	1.96
35052759--35052790	13	2.5	13	94	0	55	15	28	31	25	1.96
35059643--35059753	56	2.0	56	94	0	195	43	15	8	33	1.76
35061046--35061077	15	2.1	15	100	0	64	31	0	37	31	1.58
35064433--35064497	29	2.2	30	83	8	80	30	6	10	52	1.61
35064616--35064684	29	2.3	29	80	5	75	39	10	11	39	1.75
35065440--35065482	21	2.0	21	86	0	59	53	13	0	32	1.41
35066427--35066469	21	2.0	21	90	0	68	16	23	16	44	1.86
35067710--35067930	40	5.5	40	81	3	221	21	28	19	30	1.97
35067710--35067933	120	1.9	120	86	1	324	20	28	18	31	1.97
35067829--35067930	20	5.1	20	64	4	62	21	29	21	27	1.99
35073307--35073363	30	1.9	30	100	0	114	54	14	10	21	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35079020--35079203	40	4.6	39	82	10	196	23	21	29	25	1.99
35079100--35079222	40	3.1	40	84	5	117	25	22	28	23	1.99
35079072--35079236	79	2.1	79	82	6	192	26	21	27	24	1.99
35096244--35096311	24	2.7	24	84	6	73	36	14	7	41	1.74
35098290--35098358	24	2.9	23	77	14	59	44	2	20	31	1.66
35098274--35098358	25	3.5	23	75	13	64	47	4	17	30	1.68
35110388--35110523	37	3.7	37	89	3	204	25	30	18	25	1.98
35110693--35110878	47	4.0	47	90	0	282	24	29	13	32	1.94
35115711--35115884	27	6.4	27	87	0	222	40	20	8	31	1.82
35115923--35115985	26	2.4	27	78	2	74	38	19	19	23	1.93
35127278--35127329	26	2.0	26	96	0	95	13	23	34	28	1.92
35127200--35127569	104	3.6	104	95	1	645	18	20	30	30	1.96
35131652--35131759	41	2.7	40	82	5	137	23	14	26	35	1.94
35131652--35131800	81	1.8	81	85	0	208	24	15	26	33	1.95
35138529--35138599	25	2.7	26	81	18	92	39	19	4	36	1.71
35139228--35139409	94	2.0	93	86	4	260	38	18	7	35	1.80
35139514--35139553	16	2.5	16	87	0	53	67	0	2	30	1.04
35139519--35139634	28	4.3	26	72	15	92	59	0	5	34	1.26
35139501--35139607	17	6.0	18	71	21	66	62	0	3	32	1.19
35139492--35139607	10	12.6	9	69	19	62	62	0	3	33	1.18
35139689--35139713	12	2.1	12	100	0	50	16	0	0	84	0.63
35139886--35139917	16	2.0	17	88	11	50	21	3	0	75	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35143012--35143036	13	1.9	13	100	0	50	20	16	8	56	1.65
35143318--35143375	27	2.1	27	90	0	89	25	20	15	37	1.92
35156664--35156782	43	2.8	43	79	3	134	33	21	16	27	1.95
35157110--35157148	19	2.1	19	100	0	78	43	15	0	41	1.46
35173970--35174059	24	3.7	24	78	10	76	30	21	15	33	1.94
35173973--35174037	24	2.6	26	85	4	80	33	20	12	33	1.89
35173995--35174094	45	2.2	45	83	7	130	25	24	17	34	1.96
35174028--35174101	23	3.3	23	85	9	107	22	22	21	32	1.98
35174023--35174119	23	4.2	23	80	10	81	23	24	18	32	1.97
35176615--35176661	23	2.0	23	83	4	58	17	0	51	31	1.46
35183990--35184024	18	2.0	18	88	5	54	68	0	0	31	0.90
35184278--35184353	22	3.7	21	78	11	59	42	17	6	34	1.75
35184317--35184377	17	3.4	18	93	4	97	37	13	13	36	1.83
35184734--35185007	45	6.1	45	76	5	257	27	27	15	30	1.96
35184754--35184917	89	1.8	89	90	0	265	27	28	15	28	1.96
35184950--35185458	78	6.4	78	86	6	671	25	23	18	32	1.97
35185182--35185424	88	2.9	88	85	8	292	24	23	19	32	1.97
35184950--35185458	244	2.1	234	86	5	689	25	23	18	32	1.97
35185104--35185424	166	1.9	166	90	1	509	25	23	18	32	1.97
35185414--35185477	21	3.3	21	62	20	57	23	15	25	35	1.94
35185414--35185495	37	2.2	37	93	0	137	20	17	23	39	1.92
35185464--35186057	220	2.7	220	91	0	938	26	21	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35196155--35196230	22	3.7	21	76	15	68	40	17	6	35	1.75
35196168--35196262	35	2.5	35	85	13	100	37	15	9	36	1.80
35196184--35196262	35	2.2	37	86	13	121	35	16	10	37	1.82
35196205--35196260	17	3.5	15	88	9	60	35	16	10	37	1.83
35196191--35196262	19	3.9	19	89	10	123	36	15	11	37	1.83
35201178--35201363	40	4.7	40	83	5	175	26	25	20	26	1.99
35201178--35201362	80	2.3	80	77	9	198	26	25	21	26	1.99
35203618--35203758	27	5.2	27	79	11	164	34	21	24	19	1.96
35203618--35203758	54	2.6	54	93	2	239	34	21	24	19	1.96
35203864--35203926	26	2.3	26	83	5	72	30	11	23	34	1.90
35205364--35205463	26	3.8	26	94	0	182	36	26	7	31	1.83
35206916--35206944	14	2.1	14	100	0	58	37	20	13	27	1.91
35212971--35213307	170	2.0	170	95	0	602	29	6	24	39	1.80
35216847--35216889	12	3.4	12	83	6	50	20	20	9	48	1.77
35216857--35216891	12	2.9	12	91	0	52	20	20	11	48	1.79
35217137--35217170	2	17.0	2	93	0	59	52	0	47	0	1.00
35217724--35217932	103	2.0	103	93	0	355	33	15	19	30	1.93
35218644--35218673	15	2.0	15	100	0	60	40	6	26	26	1.81
35224544--35224585	20	2.0	21	90	4	68	71	0	7	21	1.09
35224990--35225051	30	2.1	30	90	0	97	24	1	12	61	1.41
35229782--35229822	9	4.6	9	90	6	57	53	2	2	41	1.27
35229781--35229823	18	2.4	19	84	11	63	51	4	4	39	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35229901--35229954	21	2.7	20	78	21	60	61	5	1	31	1.30
35229903--35229943	18	2.2	19	87	12	59	58	4	2	34	1.32
35229966--35230010	10	4.6	10	78	15	58	68	2	0	28	1.01
35229975--35230017	19	2.3	19	88	8	61	65	2	0	32	1.06
35229961--35230030	10	7.4	9	72	13	52	58	1	0	40	1.07
35230998--35231045	20	2.3	21	79	13	55	45	0	0	54	0.99
35233480--35233511	16	2.0	16	93	0	55	34	18	0	46	1.49
35233715--35234153	50	8.7	51	77	9	377	30	25	16	26	1.97
35233716--35234151	101	4.3	99	78	6	362	30	25	16	26	1.96
35233715--35234151	151	2.9	151	87	2	581	30	25	16	26	1.97
35237121--35237178	15	3.9	14	84	8	71	53	13	18	13	1.73
35237121--35237178	30	1.9	30	86	6	82	53	13	18	13	1.73
35251223--35251565	180	1.9	180	87	1	508	33	19	8	38	1.82
35252148--35252634	50	9.7	50	78	5	480	29	25	17	26	1.98
35252140--35252575	151	2.9	151	90	0	667	30	25	17	26	1.97
35252148--35252631	201	2.4	200	81	4	546	29	25	17	26	1.98
35252148--35252634	151	3.2	149	83	4	604	29	25	17	26	1.98
35253032--35253078	19	2.3	20	82	10	60	48	14	0	36	1.44
35262620--35262678	30	2.0	30	86	0	82	28	27	3	40	1.72
35263615--35263685	17	3.9	17	72	20	56	67	0	29	2	1.05
35263613--35263692	31	2.6	31	73	11	74	68	0	28	2	1.02
35263887--35263939	27	2.0	27	100	0	106	22	0	18	58	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35264126--35264389	103	2.6	103	87	4	356	31	0	17	51	1.49
35264228--35264385	50	3.1	49	65	12	129	31	0	15	53	1.43
35264188--35264409	103	2.2	102	95	3	394	31	0	15	53	1.42
35264403--35264434	16	2.1	16	94	5	57	37	3	6	53	1.42
35266236--35266291	29	1.9	29	85	0	76	33	12	28	25	1.92
35266720--35266831	46	2.5	44	89	4	170	27	16	29	25	1.97
35272891--35273022	66	2.0	66	98	0	255	44	12	14	28	1.81
35274348--35274393	24	1.9	24	82	8	58	34	26	0	39	1.57
35276373--35276540	46	3.6	45	76	9	124	29	19	28	23	1.98
35282427--35282527	50	2.0	50	94	0	175	30	14	27	26	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250