genome.fa.s9.2.7.7.80.10.50.1000.194.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  194  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60648749--60648814	5	12.8	5	75	12	62	72	1	3	22	1.06
60656916--60656963	6	7.7	6	79	9	51	66	0	16	16	1.25
60656934--60657063	57	2.3	57	88	5	183	50	5	18	25	1.68
60660368--60660410	20	2.1	21	83	12	54	53	0	23	23	1.46
60663872--60663976	52	2.0	52	100	0	210	39	13	20	26	1.90
60679485--60679517	10	3.3	10	95	0	57	9	15	0	75	1.03
60679569--60679621	22	2.5	22	84	3	72	11	13	1	73	1.18
60679570--60679630	21	3.0	20	81	11	61	13	11	1	73	1.16
60684395--60684650	134	1.9	133	87	5	374	30	21	16	32	1.95
60693008--60693037	14	2.1	14	93	0	51	46	10	13	30	1.75
60698851--60698876	11	2.4	11	100	0	52	73	7	7	11	1.26
60700627--60700682	16	3.1	19	75	19	66	64	0	1	33	1.04
60700627--60700682	17	3.1	18	76	23	64	64	0	1	33	1.04
60700637--60700707	17	4.2	16	74	16	63	63	1	1	33	1.12
60703867--60704022	77	2.0	77	98	0	303	33	17	8	39	1.81
60705244--60705270	3	9.0	3	100	0	54	33	0	0	66	0.92
60705846--60705891	18	2.8	18	84	15	64	0	30	41	28	1.56
60707068--60707119	24	2.2	24	89	0	77	55	9	1	32	1.43
60710343--60710378	15	2.4	15	90	0	54	30	11	0	58	1.33
60716284--60716609	95	3.4	95	85	0	420	29	16	28	25	1.97
60716245--60716555	45	6.6	45	71	13	189	29	17	27	25	1.98
60716378--60716659	50	5.8	49	74	8	177	29	18	28	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60716295--60716647	190	1.8	187	81	4	427	29	16	28	25	1.97
60721548--60721821	39	7.0	39	94	0	476	21	24	30	24	1.99
60727353--60727470	39	3.0	39	96	0	218	19	24	32	23	1.98
60740430--60740491	32	1.9	32	93	0	106	35	3	9	51	1.51
60740612--60740657	24	1.9	24	91	8	76	54	0	6	39	1.26
60740724--60740788	6	10.8	6	98	0	121	47	16	0	35	1.47
60744313--60744337	11	2.3	11	100	0	50	8	28	0	64	1.22
60745590--60745641	25	2.1	25	85	0	68	36	9	15	38	1.80
60748043--60748206	76	2.1	77	95	1	294	24	27	12	35	1.92
60750191--60750237	16	2.8	17	78	12	53	42	0	2	55	1.12
60750835--60750957	58	2.1	59	81	4	142	52	12	13	21	1.72
60751447--60751489	20	2.2	20	95	0	77	41	6	4	46	1.51
60757172--60757437	142	1.9	141	95	0	478	30	19	13	36	1.91
60768861--60768893	4	8.2	4	100	0	66	51	24	0	24	1.48
60769541--60769607	29	2.3	28	80	12	73	28	14	1	55	1.49
60769820--60769973	3	50.0	3	74	14	111	28	6	1	63	1.27
60769985--60770017	15	2.3	15	89	5	50	27	9	0	63	1.24
60773599--60773639	19	2.1	20	86	4	57	29	17	4	48	1.67
60781731--60782470	44	16.7	45	65	19	149	29	18	26	25	1.98
60781818--60782158	88	3.9	88	71	10	268	29	18	25	26	1.98
60781727--60782157	176	2.4	175	85	6	500	29	18	25	25	1.98
60781951--60782489	133	4.1	134	79	7	526	29	19	25	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60782520--60783032	45	11.2	45	69	9	225	35	18	18	28	1.94
60782656--60783015	140	2.6	140	90	1	542	36	17	19	26	1.94
60784359--60784550	3	62.7	3	68	18	67	30	8	1	59	1.36
60784361--60784419	15	4.0	14	89	6	82	30	1	0	67	1.00
60784510--60784550	23	1.9	22	85	14	59	29	4	4	60	1.38
60784518--60784571	20	2.5	23	79	11	60	24	11	3	61	1.46
60784687--60784833	3	47.7	3	69	14	61	27	6	2	63	1.31
60792125--60792288	43	3.9	41	79	9	170	23	18	25	32	1.97
60796345--60796431	43	2.0	43	100	0	174	40	9	27	22	1.85
60798226--60798260	11	2.8	13	83	16	56	57	20	8	14	1.63
60799676--60799789	56	2.0	56	98	0	219	41	21	10	26	1.86
60804726--60804798	35	2.1	35	100	0	146	53	8	10	27	1.64
60805622--60805662	22	1.9	21	85	5	55	31	0	0	68	0.90
60805622--60805668	22	2.3	20	82	10	51	27	0	0	72	0.85
60808704--60808837	67	2.0	69	85	5	184	39	4	5	50	1.45
60808747--60808795	20	2.8	17	75	19	55	42	4	2	51	1.32
60813237--60813296	30	2.0	30	90	0	93	58	13	1	26	1.45
60818666--60818722	28	2.0	28	86	0	78	38	19	17	24	1.93
60820648--60820694	3	15.7	3	100	0	94	65	0	0	34	0.93
60821935--60821991	29	2.0	29	96	0	105	40	8	22	28	1.84
60825413--60825460	24	2.0	24	95	0	87	41	6	31	20	1.77
60832458--60832487	15	1.9	16	93	6	53	40	16	13	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60834498--60834566	31	2.2	31	84	0	84	37	14	7	40	1.74
60835873--60835907	17	2.1	17	88	0	52	68	17	0	14	1.21
60837502--60837532	2	15.5	2	93	0	53	45	0	3	51	1.17
60838010--60838484	256	1.9	256	89	0	736	30	14	18	36	1.90
60849960--60850387	227	1.9	227	85	0	597	32	19	21	27	1.97
60850622--60850655	15	2.2	16	89	5	52	85	8	2	2	0.80
60850622--60850668	16	2.9	16	81	9	51	80	14	2	2	0.89
60852018--60852059	3	14.7	3	82	9	52	28	2	0	69	1.01
60852779--60853235	253	1.8	253	88	0	700	29	14	19	37	1.91
60858543--60858584	22	2.0	21	86	13	59	52	4	0	42	1.22
60864450--60864524	32	2.4	31	95	2	132	0	17	2	80	0.84
60864435--60864520	4	22.0	4	73	13	63	0	22	1	76	0.85
60867949--60868021	34	2.1	34	94	0	128	39	24	9	26	1.86
60869190--60869238	24	2.0	24	100	0	98	24	12	26	36	1.91
60871184--60871230	21	2.3	20	85	7	67	61	10	2	25	1.39
60871184--60871225	21	2.0	21	90	4	68	64	11	2	21	1.38
60874420--60874453	14	2.4	14	90	5	50	17	0	0	82	0.67
60874445--60874628	96	1.9	97	86	3	264	32	23	14	29	1.94
60881483--60881525	22	2.0	22	100	0	86	34	18	4	41	1.71
60883026--60883066	4	10.2	4	85	15	50	70	0	0	29	0.87
60883023--60883089	7	9.4	7	81	13	59	73	0	2	23	0.97
60883019--60883086	17	4.2	17	78	16	72	73	0	2	23	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60887565--60887734	92	1.8	93	91	1	279	29	29	20	21	1.98
60887557--60887725	46	3.7	46	77	15	195	30	29	18	20	1.97
60891679--60891849	93	1.8	93	89	0	270	28	28	20	22	1.99
60891669--60891845	46	3.8	46	74	10	171	29	27	20	22	1.98
60894232--60894272	15	2.7	15	88	0	64	58	9	19	12	1.61
60894234--60894281	15	3.2	15	79	5	53	56	14	16	12	1.68
60897209--60897380	46	3.8	46	77	15	185	29	27	21	21	1.99
60897215--60897392	91	2.0	90	87	4	259	28	29	20	20	1.98
60897212--60897399	46	4.1	45	70	19	131	28	28	21	21	1.98
60899452--60899725	46	6.0	46	90	0	361	21	23	14	40	1.90
60904946--60904980	14	2.5	14	100	0	70	14	17	8	60	1.58
60905400--60905480	40	2.1	40	90	6	132	60	3	12	23	1.48
60906211--60906259	10	4.9	10	85	5	55	63	0	10	26	1.26
60906705--60906938	107	2.2	105	81	5	272	29	17	25	27	1.98
60909653--60909685	6	5.5	6	100	0	66	18	15	48	18	1.81
60917831--60917855	11	2.3	11	100	0	50	52	8	12	28	1.66
60927774--60927847	37	2.0	37	84	10	98	58	8	5	28	1.49
60929332--60929720	88	4.4	86	76	10	360	37	19	17	26	1.93
60929665--60929962	75	3.8	76	75	14	257	32	20	18	28	1.96
60929627--60929775	73	2.0	72	88	6	219	32	22	18	26	1.97
60929557--60930118	165	3.4	164	86	7	698	33	21	17	27	1.96
60929941--60929975	14	2.5	14	95	0	61	60	5	17	17	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60929871--60930131	89	2.9	91	90	2	399	37	20	16	26	1.93
60930032--60930062	16	1.9	16	100	0	62	64	6	16	12	1.47
60942157--60942228	37	1.9	37	83	10	94	58	6	5	29	1.47
60942750--60942794	23	1.9	23	86	4	63	77	4	6	11	1.09
60943593--60943650	23	2.5	22	76	15	55	53	3	13	29	1.56
60943786--60943827	20	2.1	20	91	8	68	54	4	4	35	1.42
60943779--60943869	22	4.3	23	77	14	81	57	3	4	35	1.35
60943802--60943909	22	5.2	20	73	20	80	61	3	2	32	1.28
60943799--60943909	42	2.7	38	79	18	100	61	3	2	32	1.27
60944087--60944121	15	2.5	15	90	9	56	51	11	0	37	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250