genome.fa.s9.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  141  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45675557--45675658	42	2.4	43	81	6	118	29	25	17	27	1.98
45675968--45676011	22	2.0	22	82	8	54	38	22	0	38	1.55
45686607--45686704	49	2.0	49	97	0	187	34	11	22	31	1.89
45688768--45688843	36	2.1	36	100	0	152	28	5	14	51	1.64
45690499--45690557	23	2.6	23	83	0	64	20	20	11	47	1.81
45695592--45695641	13	3.2	16	70	18	52	48	0	0	52	1.00
45695584--45695641	29	2.0	30	83	10	75	44	1	1	51	1.21
45695725--45695781	15	3.5	15	71	17	51	49	1	1	47	1.22
45700593--45700630	19	2.0	20	85	14	55	13	15	18	52	1.74
45712653--45712744	27	3.4	28	80	5	91	19	7	14	58	1.59
45720019--45720052	4	8.5	4	93	0	59	23	2	0	73	0.97
45727799--45727831	17	1.9	17	88	11	50	6	3	6	84	0.84
45734473--45734501	14	2.0	15	93	6	51	20	41	10	27	1.85
45738000--45738039	21	1.9	21	84	0	53	32	5	2	60	1.32
45741050--45741079	14	2.2	14	94	5	53	6	3	10	80	1.01
45741058--45741116	23	2.4	25	83	5	77	15	3	8	72	1.21
45741132--45741192	28	2.2	27	77	16	63	26	1	4	67	1.20
45741160--45741217	22	2.6	21	75	10	53	27	0	5	67	1.12
45741107--45741208	14	7.4	14	69	25	51	27	0	5	65	1.22
45741196--45741227	10	3.3	10	91	8	57	37	0	0	62	0.95
45741091--45741246	83	1.9	83	93	2	269	28	1	5	64	1.25
45742607--45742638	13	2.5	13	94	0	55	31	0	12	56	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45742733--45742974	50	4.7	50	85	4	288	26	23	29	20	1.99
45742733--45742982	100	2.4	103	87	6	355	26	23	29	21	1.99
45750874--45750925	23	2.3	23	93	0	86	76	7	1	13	1.07
45750875--45750918	11	3.9	11	82	5	61	75	6	2	15	1.12
45754208--45754243	15	2.4	15	100	0	72	50	5	22	22	1.70
45766755--45766789	3	11.7	3	100	0	70	34	0	0	65	0.93
45774422--45774473	22	2.4	22	78	12	54	57	3	5	32	1.40
45775273--45775463	78	2.5	78	89	1	278	29	14	17	39	1.89
45775729--45775772	21	2.2	20	87	4	61	59	0	34	6	1.24
45794784--45794820	12	3.1	12	92	0	65	10	27	37	24	1.88
45799581--45799662	41	2.0	41	87	0	119	24	23	17	35	1.95
45801674--45801798	66	1.9	66	88	0	187	26	28	24	21	1.99
45801674--45801817	66	2.2	65	85	5	182	25	26	25	22	2.00
45805853--45805984	48	2.8	46	80	7	149	44	34	5	15	1.70
45805845--45805985	23	6.1	22	75	8	120	43	36	4	14	1.68
45806846--45806929	26	3.2	26	63	24	66	46	19	5	28	1.73
45806850--45806943	30	3.3	29	70	18	99	47	20	6	25	1.73
45806843--45806955	54	2.1	54	96	0	208	48	19	5	26	1.70
45810738--45810765	12	2.3	12	100	0	56	50	0	7	42	1.30
45812246--45812302	28	2.0	28	93	0	96	38	8	19	33	1.82
45816375--45816407	14	2.5	13	86	13	50	30	0	0	69	0.88
45821444--45821470	3	9.0	3	100	0	54	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45823296--45823426	70	1.9	66	83	9	165	44	13	5	36	1.67
45829766--45829870	43	2.5	42	83	7	131	36	17	20	26	1.94
45837435--45837550	45	2.6	45	84	2	144	23	14	26	35	1.93
45845379--45845498	45	2.7	45	88	0	168	23	17	26	32	1.97
45846352--45846408	26	2.2	26	96	0	105	31	0	26	42	1.56
45853382--45853414	17	2.0	17	94	5	59	36	15	0	48	1.45
45853695--45854019	46	7.1	47	93	1	466	20	24	14	41	1.89
45855859--45855906	11	4.2	11	79	10	51	62	2	0	35	1.07
45861266--45861438	93	1.9	93	91	0	283	27	30	21	21	1.98
45861259--45861434	46	3.8	46	78	10	187	28	29	21	21	1.98
45865284--45865322	20	2.1	19	85	9	53	51	17	28	2	1.59
45869462--45869655	27	7.2	26	89	3	253	20	17	20	42	1.90
45876461--45876611	43	3.5	43	71	12	130	29	16	21	31	1.96
45880461--45880740	48	5.9	48	72	6	221	28	19	27	23	1.98
45880471--45880740	96	2.8	96	79	7	275	28	20	27	22	1.99
45880707--45880783	38	2.0	38	97	0	145	35	22	20	22	1.96
45885905--45885965	30	2.0	30	83	0	77	31	22	8	37	1.84
45890346--45890406	30	2.0	30	83	0	77	31	22	8	37	1.84
45891967--45891991	5	5.0	5	100	0	50	80	0	0	20	0.72
45895939--45896000	31	1.9	33	83	6	83	46	1	1	50	1.20
45896764--45896797	14	2.3	15	90	5	52	88	8	0	2	0.62
45897658--45897722	19	3.3	18	75	21	60	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45897658--45897722	9	6.7	9	76	15	58	47	0	0	52	1.00
45898063--45898163	46	2.2	46	100	0	202	38	13	13	33	1.85
45901328--45901441	48	2.4	47	79	4	140	37	21	11	28	1.89
45901488--45901522	18	1.9	18	94	0	61	37	20	0	42	1.52
45905761--45905813	26	2.0	27	85	7	74	24	15	22	37	1.92
45907302--45907357	26	2.2	26	96	0	103	35	25	8	30	1.86
45915028--45915194	56	3.0	57	86	5	216	34	23	13	28	1.93
45916922--45916988	30	2.2	30	86	0	89	49	4	16	29	1.65
45918880--45918929	22	2.3	22	96	0	91	38	34	12	16	1.85
45931078--45931127	21	2.4	21	100	0	100	18	18	38	26	1.93
45935162--45935219	3	20.7	3	73	19	54	62	3	0	34	1.12
45935149--45935218	13	5.5	13	68	23	51	58	2	1	37	1.22
45935154--45935219	8	8.0	8	73	23	57	60	3	1	34	1.21
45937638--45937668	15	2.1	15	100	0	62	16	12	19	51	1.76
45943892--45943950	20	3.0	19	73	14	57	40	10	10	38	1.73
45944578--45944671	23	4.1	23	84	0	125	23	25	3	47	1.66
45949087--45949180	23	4.1	23	81	0	116	23	24	3	48	1.65
45957588--45957762	49	3.5	49	83	6	226	29	25	18	25	1.98
45957575--45957763	100	1.9	100	93	0	324	29	25	19	25	1.98
45965650--45965709	15	3.9	16	74	10	54	33	3	1	61	1.22
45965704--45965939	24	10.4	22	66	23	75	35	3	5	54	1.43
45965738--45965764	10	2.7	10	100	0	54	40	0	7	51	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45965867--45965941	38	1.9	38	86	7	107	37	4	1	57	1.26
45965868--45965976	14	8.2	13	69	24	61	35	4	1	57	1.30
45965887--45966080	27	7.8	25	72	15	134	31	7	6	55	1.52
45965887--45966031	25	5.6	27	77	9	110	31	6	6	55	1.49
45966363--45966636	48	5.7	48	83	0	350	26	28	17	27	1.98
45966363--45966640	96	2.9	96	96	0	502	26	28	17	26	1.97
45968846--45968877	13	2.5	13	94	0	55	9	15	0	75	1.05
45969175--45969204	14	2.1	14	93	0	51	0	16	0	83	0.65
45970193--45970263	35	2.0	35	91	5	117	36	18	11	33	1.86
45973543--45973585	3	14.3	3	100	0	86	67	0	0	32	0.91
45979648--45979697	21	2.3	21	83	12	66	50	10	0	40	1.36
45981137--45981920	266	3.0	260	81	4	889	28	16	16	38	1.90
45981943--45981973	7	4.6	7	96	4	55	48	35	0	16	1.46
45981586--45982308	389	1.9	389	81	1	898	31	17	14	36	1.90
45985224--45985282	24	2.5	23	86	10	84	69	3	11	15	1.31
45987222--45987302	40	2.0	40	97	0	153	35	20	7	35	1.81
45988647--45988680	16	2.1	16	88	0	50	50	14	17	17	1.79
45991478--45991518	21	2.0	21	90	0	64	29	21	29	19	1.98
45993423--45993456	16	2.1	16	88	0	50	50	14	17	17	1.79
45994320--45994527	103	2.0	103	89	0	317	21	16	14	47	1.82
45995900--45995932	15	2.3	15	89	5	50	57	9	0	33	1.30
46011631--46011737	34	3.1	34	77	5	99	28	19	23	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46013573--46013761	84	2.2	84	86	0	279	50	10	9	30	1.68
46015538--46015578	6	6.8	6	97	0	64	85	9	4	0	0.73
46016550--46016575	13	2.0	13	100	0	52	23	15	15	46	1.83
46018140--46018179	14	2.9	14	84	0	53	42	17	7	32	1.77
46018105--46018171	34	1.9	35	87	3	100	44	13	10	31	1.77
46018235--46018426	87	2.2	87	86	5	255	45	8	10	35	1.70
46018198--46018489	87	3.4	86	79	9	242	42	11	9	35	1.74
46018451--46018667	89	2.4	89	87	4	296	40	14	12	32	1.83
46020453--46020487	12	2.9	12	91	0	61	57	0	28	14	1.38
46021682--46021756	20	3.8	19	76	13	71	36	1	1	61	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250