genome.fa.s9.2.7.7.80.10.50.1000.222.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  222  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68352735--68352764	15	1.9	16	93	6	53	43	0	0	56	0.99
68352738--68352780	23	1.9	22	86	13	61	41	0	0	58	0.98
68354562--68354607	20	2.2	20	84	7	56	23	2	6	67	1.25
68354578--68354620	19	2.2	20	87	8	61	32	0	6	60	1.23
68371569--68371612	21	2.1	21	83	8	54	77	4	13	4	1.08
68371808--68371889	37	2.2	37	97	0	155	17	10	53	18	1.72
68371983--68372024	16	2.5	17	85	14	61	7	0	38	54	1.28
68372165--68372386	109	2.0	110	90	6	351	40	15	14	28	1.87
68384611--68384645	17	2.0	18	88	5	54	40	2	0	57	1.14
68385565--68385831	132	2.0	132	86	2	367	36	19	17	26	1.94
68386922--68386966	3	15.0	3	100	0	90	66	0	0	33	0.92
68388351--68388875	45	11.6	45	67	17	198	28	21	19	31	1.97
68388286--68388879	137	4.3	137	91	1	906	27	20	19	32	1.97
68400414--68400680	132	2.0	132	86	2	376	35	19	17	27	1.94
68400968--68401005	3	12.7	3	88	0	58	71	0	0	28	0.87
68401505--68401556	24	2.2	24	89	6	79	55	0	1	42	1.10
68406289--68406366	21	3.8	21	79	3	88	43	19	21	15	1.87
68414177--68414203	7	3.9	7	100	0	54	29	11	14	44	1.80
68417490--68417538	23	2.1	23	96	0	89	16	14	14	55	1.70
68420236--68420268	13	2.4	14	85	10	50	51	0	15	33	1.43
68430557--68430597	21	2.0	21	81	18	50	31	19	26	21	1.97
68448861--68449137	137	2.0	138	95	0	502	41	17	10	31	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68453081--68453177	30	3.2	30	85	2	115	28	19	17	34	1.95
68453956--68454004	20	2.5	20	87	12	66	36	2	2	59	1.21
68457750--68457788	10	3.8	10	83	6	51	25	7	0	66	1.18
68458506--68458539	18	1.9	18	94	5	61	26	11	5	55	1.58
68461369--68461416	23	2.1	23	84	3	62	50	4	14	31	1.62
68461419--68461467	18	2.6	18	87	6	62	28	2	2	67	1.13
68461855--68461997	67	2.1	67	84	2	180	24	23	17	34	1.96
68465120--68465201	23	3.4	24	79	17	89	43	1	1	53	1.16
68465120--68465221	24	4.2	23	77	16	91	43	0	1	53	1.18
68465441--68465473	17	1.9	17	88	11	50	36	0	0	63	0.95
68468492--68468691	52	3.9	52	77	10	173	24	16	28	30	1.96
68468559--68468671	53	2.3	48	82	10	122	28	16	25	29	1.97
68473754--68473801	25	1.9	25	86	0	69	72	8	6	12	1.26
68474268--68474297	6	5.2	6	92	8	53	0	16	0	83	0.65
68474268--68474297	11	2.6	11	94	5	51	0	16	0	83	0.65
68474335--68474382	25	1.9	25	86	0	69	12	6	8	72	1.26
68474335--68474390	25	2.2	25	83	0	67	14	5	8	71	1.29
68474714--68474756	20	2.1	21	86	4	61	46	2	0	51	1.13
68475802--68475865	32	2.0	32	81	6	76	70	4	4	20	1.24
68477560--68477598	20	2.0	20	94	0	69	20	41	28	10	1.85
68482994--68483035	13	3.2	13	89	3	57	78	0	9	11	0.96
68485858--68486027	47	3.6	47	93	1	288	22	18	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68490687--68490729	4	10.8	4	100	0	86	51	25	0	23	1.49
68492918--68492986	33	2.1	33	86	5	95	37	8	21	31	1.84
68495578--68495900	160	2.0	160	98	0	628	28	19	14	38	1.90
68506138--68506263	39	3.3	38	85	3	171	23	23	20	32	1.98
68507360--68507396	9	4.1	9	89	0	56	48	10	10	29	1.72
68523116--68523171	17	3.2	17	89	5	76	71	1	7	19	1.18
68523742--68523777	16	2.2	17	90	5	56	61	0	0	38	0.96
68523810--68523866	15	3.5	15	71	17	51	49	1	1	47	1.22
68524302--68524339	14	2.7	14	95	0	67	39	0	0	60	0.97
68530016--68530122	33	3.3	32	81	6	117	33	23	11	31	1.90
68538808--68538874	32	2.1	32	97	0	125	34	7	14	43	1.74
68539700--68539832	62	2.2	60	84	8	162	44	10	18	26	1.82
68546612--68546664	25	2.3	22	81	12	61	66	9	0	24	1.21
68546742--68546795	23	2.5	23	82	8	60	61	9	0	29	1.27
68546742--68546789	23	2.1	23	84	3	62	62	10	0	27	1.27
68546766--68546898	25	5.3	25	68	9	76	57	3	8	31	1.44
68546995--68547051	29	2.0	29	89	6	89	63	0	10	26	1.27
68547011--68547051	14	2.8	15	75	20	50	60	0	9	29	1.28
68546993--68547091	43	2.3	43	81	6	103	62	3	9	25	1.39
68546977--68547060	29	2.9	27	76	15	78	60	0	9	29	1.28
68550819--68550875	22	2.5	24	75	13	66	59	0	3	36	1.14
68553709--68553751	16	2.7	15	75	10	50	58	6	9	25	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68565928--68565987	27	2.3	26	94	2	102	51	33	3	11	1.55
68569536--68569612	20	3.9	20	73	19	63	40	3	7	48	1.51
68569526--68569585	18	3.2	17	75	20	57	38	5	6	50	1.51
68573400--68573440	21	2.0	21	90	0	64	19	29	21	29	1.98
68579899--68579959	9	6.8	9	96	0	104	37	29	9	22	1.87
68591419--68591452	17	2.0	17	94	0	59	44	50	0	5	1.26
68596058--68596091	17	2.0	17	94	0	59	44	50	0	5	1.26
68602282--68602342	20	3.0	20	73	17	54	42	0	1	55	1.09
68621155--68621211	30	1.9	30	92	0	96	38	10	26	24	1.88
68622601--68622678	31	2.6	30	81	4	86	52	11	16	19	1.74
68623493--68623520	13	2.2	13	100	0	56	32	0	14	53	1.41
68625705--68625756	16	3.0	17	75	11	52	23	0	5	71	1.07
68627068--68627130	32	2.0	32	96	0	117	38	12	1	47	1.51
68629094--68629145	17	2.9	17	81	16	61	26	17	7	48	1.74
68629390--68629516	42	3.0	42	86	6	170	29	26	13	29	1.94
68629576--68629722	31	4.7	31	88	3	224	27	27	19	26	1.99
68629700--68629828	50	2.5	51	88	5	190	25	21	16	36	1.94
68645530--68645613	27	3.1	27	70	23	77	36	0	2	60	1.10
68646360--68646391	16	2.0	16	100	0	64	37	0	0	62	0.95
68647587--68647636	24	2.1	24	85	7	66	0	48	0	52	1.00
68647592--68647626	18	2.0	18	88	5	54	0	48	0	51	1.00
68653782--68653845	30	2.1	30	97	0	119	25	18	15	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68664042--68664133	45	2.0	45	95	0	166	33	9	16	40	1.81
68664371--68664540	3	56.7	3	69	14	84	31	2	2	62	1.24
68664386--68664540	14	11.6	14	67	20	75	31	3	2	62	1.24
68664488--68664540	20	2.6	21	82	5	65	30	0	0	69	0.88
68665127--68665360	126	1.9	126	89	1	371	28	17	16	38	1.91
68666683--68666729	19	2.5	19	86	6	60	25	25	10	38	1.88
68669053--68669091	20	2.0	20	89	0	60	84	5	10	0	0.76
68669053--68669098	20	2.3	20	85	7	58	84	4	10	0	0.75
68670346--68670392	25	2.0	25	83	8	62	27	14	4	53	1.60
68670653--68670820	46	3.6	47	86	3	207	19	23	15	41	1.90
68670699--68670910	38	5.0	44	83	11	223	22	24	15	37	1.93
68671092--68671246	62	2.5	62	92	0	256	22	24	23	29	1.99
68673097--68673167	31	2.3	30	83	11	81	56	2	1	39	1.23
68675744--68675790	25	2.0	25	83	8	62	27	14	4	53	1.60
68676061--68676213	46	3.4	46	84	5	179	19	24	14	41	1.89
68676454--68676601	60	2.4	62	92	3	246	22	25	22	29	1.99
68680460--68680794	181	1.9	180	79	14	386	28	22	28	21	1.99
68679983--68681106	267	4.2	256	75	19	890	28	23	27	21	1.99
68679983--68681101	86	12.6	85	77	17	986	28	22	27	21	1.99
68683679--68683732	24	2.3	24	87	9	76	64	3	0	31	1.11
68710787--68710850	30	2.1	30	83	11	78	43	4	1	50	1.32
68711771--68711838	30	2.4	27	82	9	73	44	2	2	50	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68712220--68712280	15	4.1	15	72	8	54	73	0	14	11	1.09
68712587--68712629	21	2.0	23	86	9	63	46	6	6	39	1.58
68713907--68713956	24	2.1	24	96	0	91	34	8	26	32	1.85
68718987--68719026	19	1.9	19	85	14	53	32	12	0	55	1.38
68728179--68728219	21	1.9	22	85	14	59	56	4	0	39	1.21
68734293--68734323	15	2.0	16	93	6	55	41	0	0	58	0.98
68751841--68751877	18	2.0	19	89	5	58	40	10	0	48	1.38
68766533--68766564	16	2.0	16	100	0	64	31	18	0	50	1.48
68767005--68767096	48	1.9	48	100	0	184	38	10	8	42	1.71
68768351--68768393	20	2.2	20	95	0	77	20	16	6	55	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250