genome.fa.s9.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  126  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40614209--40614283	28	2.7	28	78	10	82	65	0	5	29	1.15
40625443--40625483	18	2.3	18	86	0	55	68	9	2	19	1.29
40627441--40627475	17	2.0	18	88	5	54	37	5	14	42	1.69
40640492--40640524	16	2.1	16	88	11	50	78	0	21	0	0.75
40644680--40644709	15	2.0	15	93	0	51	66	3	0	30	1.07
40655584--40655729	47	3.1	47	79	5	152	25	17	27	30	1.97
40655509--40655712	47	4.3	47	78	9	155	24	15	27	31	1.96
40661002--40661154	59	2.6	60	84	5	204	51	9	15	23	1.72
40661002--40661145	28	4.9	28	71	16	112	50	9	15	24	1.75
40664246--40664290	22	2.0	22	100	0	90	31	8	13	46	1.74
40671755--40671789	17	2.1	17	89	5	54	57	0	5	37	1.23
40675480--40675557	21	3.7	21	69	6	59	17	28	35	17	1.94
40675491--40675570	42	1.9	42	89	0	124	21	26	35	17	1.95
40676246--40676278	15	2.2	15	89	10	50	84	0	0	15	0.61
40679010--40679122	56	2.0	56	91	0	181	52	15	8	23	1.70
40680471--40680502	13	2.3	15	89	10	50	25	0	6	68	1.12
40688477--40688780	94	3.2	94	80	8	287	28	19	27	24	1.98
40688477--40688644	46	3.6	45	74	10	144	28	17	29	24	1.97
40690434--40690465	14	2.3	14	100	0	64	34	31	15	18	1.93
40695093--40695149	30	1.9	30	88	0	87	31	7	28	33	1.84
40695487--40695655	48	3.6	45	73	12	144	31	17	26	24	1.97
40695533--40695655	46	2.6	46	81	8	124	32	17	26	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40700053--40700093	21	2.0	21	95	0	73	0	53	19	26	1.45
40705527--40705598	9	8.2	9	77	9	69	36	0	16	47	1.47
40705531--40705605	34	2.2	34	85	4	98	34	0	16	49	1.46
40705731--40705871	9	15.7	9	65	24	66	38	2	14	44	1.60
40705736--40705845	30	3.6	30	73	13	100	38	3	14	43	1.63
40705769--40705855	16	5.6	16	73	5	79	37	3	14	43	1.63
40705739--40705855	62	1.9	62	92	0	198	37	3	14	44	1.62
40705981--40706344	99	3.7	99	94	1	642	50	4	7	37	1.50
40706226--40706406	56	3.1	55	73	14	166	53	3	5	37	1.43
40706266--40706458	62	3.2	60	73	16	193	54	2	5	36	1.38
40706325--40706363	19	2.1	19	100	0	78	66	0	0	33	0.92
40706226--40706458	118	2.0	118	89	3	362	53	3	6	37	1.43
40709393--40709418	12	2.2	12	100	0	52	50	23	7	19	1.73
40712303--40712388	40	2.2	40	86	0	127	23	22	22	32	1.98
40712523--40712646	40	3.1	40	89	0	176	20	21	23	33	1.97
40712537--40712647	40	2.8	40	91	0	177	21	23	22	32	1.98
40712536--40712670	40	3.4	38	85	4	153	24	22	21	31	1.98
40712519--40712688	80	2.1	80	77	8	175	21	21	22	34	1.97
40716319--40716369	20	2.5	20	93	0	84	23	25	31	19	1.98
40722475--40722529	22	2.5	22	82	5	76	14	29	32	23	1.94
40734334--40734385	27	1.9	27	100	0	104	38	23	9	28	1.86
40734340--40734544	27	7.6	27	86	1	259	35	20	20	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40734650--40734680	16	1.9	16	93	0	53	29	19	16	35	1.93
40738720--40738757	19	2.0	20	89	5	60	44	13	2	39	1.57
40746119--40746169	20	2.5	21	78	15	63	45	13	0	41	1.44
40750214--40750313	47	2.2	46	82	8	114	47	13	8	32	1.71
40754141--40754407	10	27.8	10	66	18	79	60	2	2	33	1.27
40754225--40754406	10	19.4	9	70	21	117	59	3	2	34	1.26
40754130--40754406	19	14.5	18	69	19	120	59	3	3	33	1.29
40754306--40754402	34	2.8	33	79	17	92	58	1	3	37	1.20
40754345--40754403	18	2.7	24	73	23	58	59	0	3	37	1.14
40762834--40762913	38	2.1	38	100	0	160	41	18	5	35	1.73
40763534--40763689	42	3.7	42	86	4	215	30	25	14	30	1.94
40774477--40774528	25	2.1	24	86	10	70	46	0	5	48	1.26
40774584--40774646	30	2.1	30	84	3	81	50	11	7	30	1.66
40777445--40777618	46	3.8	46	78	13	203	21	20	28	29	1.98
40777440--40777610	93	1.8	93	92	0	288	21	20	28	29	1.98
40786443--40786500	27	2.1	28	81	12	68	68	8	8	13	1.37
40788765--40788845	37	2.2	37	84	6	103	39	28	9	22	1.86
40788749--40788845	36	2.7	36	77	4	106	37	25	12	24	1.91
40788777--40788871	37	2.6	37	78	8	97	40	23	13	23	1.90
40795113--40795245	29	4.6	29	80	1	151	25	20	21	32	1.98
40795160--40795233	14	5.1	14	68	12	51	22	20	24	32	1.98
40795198--40795306	44	2.5	43	78	1	119	23	17	22	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40795242--40795312	29	2.4	29	80	0	79	26	16	22	33	1.96
40795169--40795318	73	2.1	72	88	1	219	26	18	21	34	1.96
40795463--40795552	37	2.4	37	83	0	108	36	24	22	16	1.94
40802354--40802552	51	3.9	51	89	1	310	31	25	12	31	1.92
40808775--40809018	51	4.8	51	89	2	375	28	25	14	31	1.95
40808775--40809016	101	2.4	102	90	3	373	28	25	14	30	1.95
40809058--40809103	24	1.9	24	95	0	83	19	21	19	39	1.93
40811102--40811153	20	2.6	20	96	0	95	11	30	32	25	1.91
40818499--40818553	20	2.8	21	81	13	64	43	9	16	30	1.79
40818604--40818765	26	6.3	26	89	3	242	29	20	22	27	1.99
40821922--40821984	24	2.6	24	89	2	90	33	22	9	34	1.86
40829056--40829119	24	2.6	24	87	2	92	32	23	9	34	1.87
40830341--40830377	19	1.9	19	88	0	56	32	2	5	59	1.34
40833450--40833576	67	1.9	67	88	0	191	30	26	22	20	1.98
40834642--40834717	9	8.9	9	72	16	54	39	11	6	42	1.68
40834642--40834717	34	2.2	34	83	0	89	39	11	6	42	1.68
40835090--40835131	20	2.1	20	82	8	50	42	14	0	42	1.45
40836691--40836952	47	5.6	47	77	12	229	27	20	28	23	1.99
40836691--40836953	94	2.8	92	81	11	270	27	20	28	23	1.99
40836691--40836952	140	1.9	141	82	8	338	27	20	28	23	1.99
40844286--40844557	47	5.8	46	78	9	198	28	19	30	21	1.98
40844291--40844554	140	1.9	141	83	3	345	28	19	29	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40845386--40845487	42	2.4	42	96	0	186	14	23	38	23	1.92
40847081--40847132	27	1.9	27	92	0	86	28	32	23	15	1.95
40847091--40847242	71	2.1	72	89	3	227	30	28	17	23	1.97
40847091--40847278	71	2.6	72	84	8	211	31	29	17	21	1.96
40847158--40847383	103	2.2	104	92	3	370	31	30	19	18	1.95
40847712--40847775	30	2.2	29	81	10	76	29	28	6	35	1.82
40847719--40847775	30	1.9	30	85	3	80	29	24	7	38	1.82
40854714--40854937	104	2.2	104	93	1	378	31	31	19	17	1.95
40855266--40855329	30	2.2	29	81	10	76	29	28	6	35	1.82
40855273--40855329	30	1.9	30	85	3	80	29	24	7	38	1.82
40858726--40858766	20	2.0	20	85	0	55	41	14	0	43	1.45
40860421--40860484	32	2.0	32	96	0	119	42	3	14	40	1.61
40866852--40866901	25	2.0	25	100	0	100	32	8	4	56	1.47
40866856--40866912	25	2.3	25	87	0	78	36	5	7	50	1.52
40872519--40872550	6	5.3	6	92	0	55	18	0	0	81	0.70
40872555--40872596	20	2.1	20	100	0	84	19	16	4	59	1.54
40872546--40872592	20	2.3	21	92	3	78	19	12	6	61	1.52
40872735--40872794	31	1.9	31	83	6	77	51	0	1	46	1.10
40876985--40877045	15	4.1	15	84	0	77	31	14	0	54	1.41
40890875--40890919	4	10.5	4	81	13	54	71	0	4	24	1.05
40891292--40891365	37	2.0	37	100	0	148	45	16	16	21	1.84
40891751--40891783	10	3.4	10	91	4	50	12	42	27	18	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40892757--40893190	44	9.6	44	70	11	236	29	20	17	32	1.96
40904373--40904482	19	5.7	19	71	19	68	34	2	4	58	1.33
40904343--40904494	77	1.9	79	90	6	247	34	3	5	56	1.38
40910983--40911023	17	2.4	17	87	0	55	2	9	14	73	1.19
40911604--40911845	44	5.5	44	78	2	234	28	21	16	33	1.96
40911599--40911845	89	2.8	89	79	1	273	28	21	16	33	1.95
40919453--40919487	17	2.1	17	89	10	54	71	0	2	25	1.00
40922844--40922905	20	3.2	20	73	11	65	32	24	1	41	1.64
40932107--40932141	15	2.3	15	90	0	52	25	40	8	25	1.84
40933597--40933644	20	2.3	20	85	3	69	52	10	12	25	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250