genome.fa.s9.2.7.7.80.10.50.1000.220.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  220  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67784486--67784520	14	2.5	14	90	0	52	17	20	5	57	1.60
67784501--67784660	74	2.1	76	87	3	225	27	18	21	32	1.97
67784424--67785628	167	7.2	164	79	10	1128	27	18	19	34	1.95
67784760--67784931	93	1.8	93	82	2	220	25	20	20	32	1.97
67784832--67785008	77	2.3	77	89	2	255	27	20	18	33	1.96
67784988--67785022	14	2.5	14	90	0	52	17	20	5	57	1.60
67784911--67785265	91	4.0	89	80	8	406	28	18	15	37	1.91
67785177--67785830	80	8.2	73	70	18	312	27	16	18	36	1.93
67785177--67785831	79	8.2	76	71	15	332	27	16	18	36	1.93
67785177--67785830	166	4.1	147	70	17	380	27	16	18	36	1.93
67785249--67785827	246	2.4	245	82	9	684	27	17	18	36	1.93
67785610--67785671	30	2.1	30	87	6	90	20	9	27	41	1.84
67786486--67786528	17	2.4	18	96	3	79	69	25	0	4	1.07
67796514--67796700	72	2.6	71	83	6	243	26	15	22	35	1.94
67796731--67797063	88	3.8	87	86	4	434	26	18	21	34	1.96
67796991--67797135	74	1.9	76	87	2	213	30	20	22	26	1.98
67796974--67797135	74	2.2	73	84	5	207	29	19	20	30	1.97
67797177--67797217	20	2.0	20	100	0	82	19	14	48	17	1.81
67797011--67797382	186	2.0	185	92	2	613	27	18	24	29	1.98
67798185--67798209	10	2.5	10	100	0	50	92	0	8	0	0.40
67799231--67799425	72	2.7	71	84	4	248	26	14	23	36	1.93
67799450--67799781	88	3.8	88	86	4	434	25	18	21	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67799693--67799853	74	2.1	76	86	5	220	29	19	20	31	1.97
67799626--67800821	167	7.2	165	80	10	1188	28	18	18	34	1.95
67800024--67800200	77	2.3	77	87	2	237	27	20	18	33	1.96
67800180--67800214	14	2.5	14	90	0	52	17	20	5	57	1.60
67800103--67800458	91	4.0	89	84	8	435	28	17	16	37	1.92
67799448--67800821	337	4.1	332	81	10	1301	27	18	19	34	1.95
67800354--67800389	14	2.7	13	83	8	54	25	16	0	58	1.38
67800370--67801024	79	8.2	76	71	15	348	28	16	18	36	1.93
67800388--67800694	156	2.0	151	81	5	348	30	16	19	33	1.94
67800442--67801020	246	2.4	248	83	9	735	27	16	18	36	1.93
67800617--67800778	88	1.8	88	84	2	218	27	17	19	36	1.94
67800803--67800864	30	2.1	30	90	6	99	19	9	29	41	1.83
67801680--67801727	22	2.2	22	88	3	71	77	14	4	4	1.08
67801679--67801749	21	3.0	23	80	17	74	76	15	4	4	1.10
67801689--67801750	27	2.3	26	89	10	99	77	14	4	3	1.06
67801689--67801750	26	2.3	27	88	5	99	77	14	4	3	1.06
67803372--67803470	30	3.3	30	89	0	153	19	6	47	27	1.72
67803405--67803460	18	3.5	17	68	27	50	19	7	46	26	1.76
67816167--67816280	60	1.9	60	92	3	194	25	48	3	22	1.67
67816167--67816280	30	3.8	30	91	0	165	25	48	3	22	1.67
67816861--67817007	25	5.6	27	74	9	117	34	8	3	54	1.47
67817133--67817213	16	4.8	16	76	23	69	30	2	1	65	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67817162--67817213	8	6.5	8	82	8	61	30	1	1	65	1.14
67818756--67818791	12	3.0	12	95	0	63	27	25	5	41	1.77
67826164--67826271	41	2.6	41	79	7	110	43	16	25	13	1.85
67827046--67827220	70	2.5	69	85	2	217	28	14	22	33	1.94
67827238--67827579	76	4.5	75	85	6	413	32	15	19	32	1.93
67827983--67828235	73	3.5	72	91	3	400	32	18	18	30	1.95
67828907--67829020	30	3.8	30	92	0	183	25	49	3	21	1.66
67829102--67829155	29	1.9	27	92	7	90	12	0	42	44	1.43
67829536--67829594	23	2.5	23	81	10	66	35	3	0	61	1.13
67829623--67829766	25	5.6	25	74	12	87	34	6	2	56	1.41
67829915--67829962	16	3.1	15	90	6	69	31	2	2	64	1.16
67829915--67829966	8	6.5	8	82	8	61	30	1	1	65	1.14
67833672--67833713	17	2.3	18	80	8	50	52	0	0	47	1.00
67835505--67835546	18	2.3	18	84	8	50	7	23	2	66	1.28
67847253--67847284	15	2.1	15	94	0	55	34	12	21	31	1.91
67847846--67847873	13	2.2	13	100	0	56	35	7	7	50	1.57
67864364--67864456	44	2.1	45	86	8	127	39	6	4	49	1.48
67869227--67869404	61	3.0	60	72	16	161	43	1	3	51	1.28
67869319--67869377	26	2.3	25	85	8	82	40	0	1	57	1.09
67869332--67869387	15	4.0	15	73	17	57	44	0	0	55	0.99
67869358--67869426	22	3.3	22	69	22	67	43	2	0	53	1.15
67869304--67869444	17	8.6	17	67	22	61	45	1	0	52	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67869672--67869739	16	4.2	16	92	0	118	35	36	0	27	1.58
67870359--67870384	2	13.0	2	100	0	52	0	50	0	50	1.00
67872470--67872510	4	10.2	4	85	15	50	46	29	0	24	1.53
67873987--67874033	18	2.4	20	79	17	62	51	10	36	2	1.49
67873996--67874033	18	2.1	18	95	0	67	47	10	39	2	1.52
67874277--67874354	33	2.4	33	91	0	129	25	16	29	28	1.97
67877390--67877453	29	2.2	30	86	8	96	45	1	0	53	1.10
67880703--67880856	76	2.0	76	94	0	272	31	8	24	35	1.85
67882787--67882853	34	2.0	34	91	5	109	38	0	5	55	1.25
67883341--67883375	6	5.8	6	100	0	70	31	51	0	17	1.45
67884325--67884364	15	2.8	14	85	7	53	32	0	2	65	1.06
67884904--67884944	18	2.3	18	91	0	64	56	2	7	34	1.40
67885373--67885506	66	2.0	67	92	1	225	45	14	11	28	1.80
67890192--67890233	21	1.9	23	90	9	70	33	26	7	33	1.83
67899520--67899570	25	2.0	25	100	0	102	49	3	23	23	1.67
67902628--67902682	5	11.6	5	78	18	64	36	1	1	60	1.18
67902620--67902680	8	7.4	8	74	20	54	34	1	3	60	1.23
67902619--67902682	13	4.7	13	87	11	83	35	1	3	59	1.23
67903945--67903988	20	2.1	20	87	8	61	56	0	18	25	1.41
67908975--67909056	26	3.2	26	96	0	146	36	24	7	31	1.83
67911941--67911983	15	2.9	15	82	3	52	44	4	11	39	1.62
67916878--67917027	75	2.0	75	92	0	246	40	9	6	43	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67917507--67917531	13	1.9	13	100	0	50	32	0	4	64	1.12
67930918--67930944	10	2.7	10	100	0	54	81	0	0	18	0.69
67934207--67934297	45	2.0	45	100	0	182	34	10	17	37	1.85
67935440--67935469	15	2.0	15	93	0	51	50	0	10	40	1.36
67935436--67935498	27	2.3	26	76	10	63	38	0	11	50	1.38
67935494--67935525	10	3.3	10	95	4	57	31	6	0	62	1.20
67935734--67935772	18	2.2	18	100	0	78	35	30	28	5	1.79
67947159--67947235	34	2.3	34	88	4	111	32	12	15	38	1.86
67957442--67957665	112	2.0	112	97	0	421	22	20	14	41	1.89
67957842--67957881	19	2.1	19	100	0	80	27	12	25	35	1.92
67959603--67959659	26	2.2	26	96	0	105	38	7	17	36	1.77
67975694--67975734	16	2.5	17	84	8	57	63	0	0	36	0.95
67977874--67977907	17	2.0	18	88	11	54	38	0	0	61	0.96
67978327--67978361	17	2.0	18	94	5	63	57	0	0	42	0.99
67978327--67978361	9	4.0	9	92	7	63	57	0	0	42	0.99
67981161--67981191	2	15.5	2	100	0	62	0	48	0	51	1.00
67993549--67993587	20	2.0	19	85	5	51	61	5	0	33	1.18
67999170--67999251	19	4.3	18	77	13	76	35	1	2	60	1.17
68002117--68002185	29	2.3	31	80	9	81	59	4	1	34	1.26
68003027--68003090	30	2.1	30	88	0	92	34	21	12	31	1.91
68006118--68006288	46	3.7	46	88	1	236	42	11	23	22	1.86
68006481--68006515	14	2.4	14	95	4	61	62	5	14	17	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68008878--68008949	37	1.9	37	81	10	85	43	18	0	38	1.50
68009281--68009316	18	2.1	18	89	5	56	33	25	0	41	1.55
68009756--68009799	17	2.4	18	88	7	63	13	9	4	72	1.24
68009769--68009812	23	1.9	23	81	9	54	20	6	4	68	1.31
68009808--68009856	18	2.9	18	79	11	59	53	2	0	44	1.12
68009979--68010023	19	2.3	20	84	3	56	60	2	0	37	1.09
68009977--68010022	22	2.0	24	83	8	60	60	2	0	36	1.09
68013089--68013116	10	2.8	10	100	0	56	10	28	50	10	1.71
68013620--68013782	3	55.7	3	65	20	60	31	3	3	61	1.29
68013631--68013683	19	2.8	19	83	8	65	30	3	1	64	1.22

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250