genome.fa.s9.2.7.7.80.10.50.1000.240.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  240  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74217320--74217386	26	2.4	26	81	16	73	32	4	0	62	1.15
74219670--74219739	31	2.3	31	85	5	88	35	10	17	37	1.83
74225001--74225080	41	1.9	42	97	2	153	22	13	15	48	1.79
74225673--74225718	21	2.1	23	84	15	62	34	4	0	60	1.16
74233344--74233404	28	2.2	28	84	0	77	34	21	18	26	1.96
74249101--74249135	18	1.9	18	94	0	61	28	14	25	31	1.95
74258869--74258903	18	1.9	18	94	0	61	31	25	14	28	1.95
74260543--74260576	16	2.1	17	88	5	52	29	23	5	41	1.78
74261979--74262029	25	2.2	23	83	13	61	66	0	0	33	0.92
74261985--74262075	27	3.3	28	73	10	80	61	2	0	36	1.08
74265408--74265473	30	2.2	31	91	2	107	40	1	7	50	1.40
74266222--74266278	29	2.0	29	86	6	80	52	0	1	45	1.11
74268769--74268820	22	2.4	22	96	0	95	26	3	15	53	1.59
74273761--74273855	45	2.1	45	82	3	120	37	6	9	46	1.62
74276446--74276492	21	2.2	22	92	3	78	21	38	19	21	1.94
74279899--74279945	24	1.9	25	82	4	60	42	2	2	53	1.25
74280397--74280473	31	2.5	30	79	6	82	45	7	6	40	1.59
74280478--74280532	30	1.9	30	82	10	71	41	12	10	34	1.78
74280970--74281026	28	2.0	28	86	0	78	38	3	19	38	1.69
74286064--74286128	33	2.0	33	100	0	130	40	0	16	43	1.49
74288422--74288456	8	4.5	8	89	3	54	40	0	0	60	0.97
74292424--74292464	20	2.0	21	86	13	59	68	0	2	29	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74292956--74293098	43	3.3	43	84	0	198	27	29	17	25	1.97
74294071--74294161	45	2.0	45	100	0	182	30	30	14	24	1.94
74299052--74299079	11	2.5	11	100	0	56	50	21	10	17	1.77
74306564--74306595	11	2.8	12	86	13	50	43	25	9	21	1.82
74307999--74308166	46	3.6	46	74	13	164	30	27	19	22	1.97
74312979--74313147	46	3.7	45	74	15	166	30	28	20	20	1.97
74316424--74316463	17	2.4	17	100	0	80	32	27	7	32	1.85
74316424--74316472	17	2.8	17	93	3	71	38	26	8	26	1.84
74316864--74316936	7	8.9	8	82	14	71	35	0	2	61	1.10
74316857--74316911	14	3.7	15	85	7	67	38	0	0	61	0.96
74317783--74317839	29	1.9	30	89	3	89	17	0	31	50	1.46
74320568--74320868	46	6.7	46	87	6	404	38	15	24	21	1.93
74320520--74320824	84	3.5	84	93	3	475	36	16	24	22	1.94
74321130--74321175	23	1.9	25	82	8	60	54	0	15	30	1.41
74321596--74321724	41	3.1	41	92	2	197	18	17	25	37	1.93
74324461--74324485	13	1.9	13	100	0	50	60	0	0	40	0.97
74327869--74327895	13	2.1	13	100	0	54	33	0	22	44	1.53
74328310--74328381	29	2.4	29	86	4	90	25	12	13	48	1.78
74329658--74329683	2	13.0	2	100	0	52	50	0	0	50	1.00
74333055--74333107	10	5.7	9	77	14	54	30	0	1	67	1.01
74333045--74333107	20	3.2	20	74	14	60	30	1	1	66	1.10
74335095--74335127	16	2.0	17	88	5	50	36	3	9	51	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74337209--74337245	20	1.9	18	89	10	56	43	0	21	35	1.53
74337802--74337977	46	3.8	46	74	12	180	21	18	28	30	1.97
74337799--74337969	93	1.8	93	92	0	288	21	19	29	29	1.98
74343169--74343214	21	2.1	22	88	4	67	19	30	19	30	1.97
74351509--74351573	20	3.3	20	78	4	87	32	0	0	67	0.91
74352712--74353197	131	3.7	130	79	3	424	35	18	18	27	1.95
74354204--74354267	31	2.1	31	90	0	101	25	23	15	35	1.94
74354481--74354646	23	7.1	23	91	3	253	28	20	21	29	1.98
74354481--74354647	47	3.6	47	90	3	266	28	20	20	29	1.98
74354460--74354646	70	2.7	69	87	7	261	28	21	21	28	1.98
74354697--74354763	20	3.3	20	91	0	107	31	20	13	34	1.92
74355966--74356000	18	1.9	18	94	0	61	71	11	11	5	1.30
74356800--74356835	16	2.2	16	90	9	56	63	2	5	27	1.30
74356794--74356849	14	3.8	15	75	11	53	62	7	5	25	1.42
74359013--74359811	44	18.2	44	87	1	1055	27	30	14	28	1.95
74371457--74371813	130	2.8	130	81	4	366	34	18	18	28	1.94
74372334--74372369	16	2.2	16	90	9	56	63	2	5	27	1.30
74372328--74372383	14	3.8	15	75	11	53	62	7	5	25	1.42
74374826--74374930	41	2.6	41	84	3	131	21	19	17	41	1.90
74375879--74375913	16	2.1	18	89	10	56	54	0	5	40	1.24
74376309--74376371	30	2.1	30	91	5	101	61	9	3	25	1.41
74381405--74381477	36	2.0	36	100	0	146	13	21	21	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74391770--74391854	21	4.0	21	80	4	80	38	25	21	14	1.91
74391768--74391842	21	3.5	22	83	7	91	38	26	21	13	1.90
74392225--74392282	15	3.8	15	86	2	80	51	10	0	37	1.36
74392228--74392286	30	2.0	28	93	6	100	55	10	0	33	1.33
74403017--74403185	41	4.1	41	90	3	225	34	22	23	19	1.97
74403048--74403185	41	3.4	41	94	1	233	33	22	24	19	1.97
74403802--74403850	24	2.0	24	92	0	80	53	4	4	38	1.39
74404129--74404189	7	8.6	7	80	3	59	22	1	26	49	1.59
74404969--74405032	22	2.9	23	77	15	71	64	3	3	29	1.24
74405024--74405105	38	2.1	40	84	8	107	42	18	23	15	1.88
74405254--74405289	18	2.0	18	88	0	54	8	41	2	47	1.48
74405319--74405397	35	2.2	36	80	6	90	34	36	3	25	1.74
74409210--74409268	9	6.6	9	86	0	82	45	23	1	28	1.63
74409210--74409268	27	2.2	27	90	0	100	45	23	1	28	1.63
74414390--74414481	43	2.1	45	89	6	143	33	4	4	57	1.38
74414408--74414473	20	3.2	20	69	12	60	34	4	3	57	1.34
74414409--74414478	23	3.2	22	66	20	56	32	4	4	58	1.37
74418760--74418793	13	2.6	13	100	0	68	26	23	41	8	1.83
74418843--74418978	41	3.3	41	89	1	211	33	23	24	19	1.97
74419458--74419553	7	13.4	7	72	2	66	19	1	34	44	1.58
74419902--74420071	81	2.1	81	91	1	270	38	15	20	25	1.92
74421780--74421827	21	2.3	21	96	0	87	20	20	58	0	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74422504--74422531	13	2.2	13	100	0	56	14	7	28	50	1.69
74425466--74425502	9	4.1	9	92	0	65	29	10	13	45	1.77
74431427--74431586	51	3.2	50	91	1	248	29	23	15	32	1.95
74434638--74434687	22	2.2	22	82	13	57	52	2	0	46	1.12
74435930--74436032	28	3.6	29	74	18	81	35	3	1	58	1.28
74436154--74436192	11	3.5	11	82	0	51	79	2	0	17	0.84
74438426--74438456	11	2.7	11	95	5	53	87	0	0	12	0.55
74438427--74438456	6	5.2	6	92	8	53	86	0	0	13	0.57
74441405--74441456	26	2.0	26	100	0	104	26	15	15	42	1.87
74442428--74442462	15	2.3	15	95	0	61	5	34	22	37	1.78
74442454--74442511	15	3.7	15	69	13	53	15	41	17	25	1.89
74442459--74442507	18	2.9	17	80	14	57	16	42	18	22	1.88
74442536--74442580	15	3.0	15	90	0	63	15	33	22	28	1.95
74442541--74442581	15	2.7	15	92	0	64	17	31	19	31	1.95
74446065--74446110	24	1.9	24	82	8	58	34	6	2	56	1.37
74446840--74446888	26	1.9	25	84	12	64	18	20	12	48	1.79
74454615--74454667	26	2.0	26	100	0	106	33	11	11	43	1.76
74456293--74456335	19	2.3	19	91	0	68	44	2	2	51	1.27
74456377--74456428	27	2.0	27	85	7	72	48	0	1	50	1.12
74456476--74456534	28	2.1	29	87	3	84	47	10	5	37	1.59
74457580--74457622	22	2.0	22	90	0	68	23	13	6	55	1.62
74462404--74462436	13	2.6	13	90	4	50	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74466921--74467028	26	4.2	26	90	2	155	35	7	21	36	1.81
74466921--74467028	52	2.1	52	94	0	189	35	7	21	36	1.81
74468650--74468736	27	3.2	27	88	6	124	18	22	24	34	1.96
74468650--74468754	27	3.9	27	83	14	112	20	23	21	34	1.97
74469749--74469834	43	2.0	43	97	0	163	31	2	19	46	1.63
74469988--74470059	26	3.0	25	84	9	96	50	0	9	40	1.36
74471040--74471067	14	2.0	14	100	0	56	64	0	0	35	0.94
74499075--74499138	33	1.9	33	90	0	101	17	9	39	34	1.82
74505498--74505538	21	2.0	21	85	4	57	51	7	4	36	1.51
74505617--74505658	20	2.1	20	86	8	59	28	2	0	69	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250