genome.fa.s9.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  111  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35668876--35669060	50	3.7	49	80	7	194	23	18	28	29	1.98
35678096--35678162	30	2.2	30	86	0	89	28	31	20	19	1.97
35678105--35678164	30	2.0	30	93	0	102	25	31	25	18	1.97
35680615--35680654	20	2.0	20	100	0	80	40	20	15	25	1.90
35683022--35683092	34	2.1	34	94	0	124	25	23	14	36	1.92
35690858--35690897	20	2.0	20	85	0	53	67	17	7	7	1.38
35694451--35694489	21	1.9	21	89	5	62	23	28	20	28	1.99
35696521--35696564	19	2.4	18	85	7	54	40	9	0	50	1.34
35698395--35698424	14	2.1	14	93	0	51	46	10	0	43	1.37
35698504--35698542	20	1.9	21	89	5	62	33	12	25	28	1.93
35698504--35698542	10	3.9	10	83	12	53	33	12	25	28	1.93
35698504--35698550	10	4.7	10	82	10	51	31	14	25	27	1.95
35704131--35704250	48	2.5	48	100	0	240	42	0	20	36	1.53
35705649--35705689	20	2.0	20	86	13	57	53	12	2	31	1.51
35709627--35709703	40	1.9	40	91	0	127	23	25	16	33	1.96
35712497--35712535	21	1.9	21	89	5	62	20	23	38	17	1.93
35713812--35713978	45	3.7	45	88	0	235	22	28	19	28	1.98
35719885--35720098	46	4.6	46	77	5	187	23	27	18	30	1.98
35719928--35720107	94	1.9	94	82	0	225	25	28	16	30	1.96
35721913--35721950	20	1.9	20	88	0	58	36	31	13	18	1.89
35730219--35730256	20	1.9	20	88	0	58	36	31	10	21	1.87
35736815--35736848	12	2.8	12	95	4	59	67	8	5	17	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35737875--35737906	12	2.7	12	100	0	64	46	12	15	25	1.81
35737908--35737932	12	2.1	12	100	0	50	76	0	16	8	1.02
35737899--35737952	18	3.0	18	80	0	63	66	1	18	12	1.33
35737908--35738006	30	3.3	30	74	2	83	63	1	24	11	1.33
35737968--35738006	18	2.1	19	85	4	53	66	2	23	7	1.30
35739938--35740030	30	3.1	30	76	4	91	27	23	15	33	1.95
35741699--35741744	12	3.8	12	85	0	65	69	4	6	19	1.28
35741698--35741744	24	2.0	24	91	0	76	68	4	6	21	1.30
35742987--35743157	43	4.0	43	76	8	170	26	15	25	33	1.95
35745653--35745697	23	1.9	24	86	4	65	26	51	2	20	1.59
35746055--35746218	27	6.1	27	87	2	195	21	15	20	42	1.88
35746026--35746218	54	3.6	53	80	4	215	23	16	19	40	1.91
35746055--35746212	81	2.0	81	87	7	232	21	14	20	43	1.87
35754353--35754392	16	2.5	16	87	0	53	15	20	20	45	1.86
35758381--35758506	29	4.4	29	89	1	166	30	29	13	26	1.94
35758719--35758754	16	2.2	16	95	0	63	25	13	5	55	1.60
35760383--35760512	27	4.9	27	78	13	119	21	18	19	40	1.91
35760382--35760512	53	2.5	53	87	5	176	21	18	19	41	1.91
35760409--35760517	27	4.1	26	83	9	139	21	18	19	41	1.91
35768811--35768951	40	3.5	40	87	4	189	23	21	28	26	1.99
35776863--35776975	40	2.8	40	89	4	167	23	22	29	25	1.99
35786122--35786320	40	5.0	40	87	6	271	25	22	26	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35786115--35786335	119	1.9	119	82	5	286	27	22	25	24	2.00
35804675--35804787	43	2.7	43	84	5	133	23	15	26	34	1.95
35804664--35804810	42	3.5	42	73	9	111	27	14	24	32	1.95
35810950--35811311	27	13.4	27	79	5	196	40	18	9	31	1.83
35810977--35811311	54	6.2	54	77	8	250	40	18	9	31	1.82
35810950--35811226	80	3.4	80	77	5	263	41	18	9	31	1.81
35811549--35811673	41	3.0	41	90	0	187	22	20	29	27	1.99
35811813--35811877	22	3.0	22	80	8	78	21	23	23	32	1.98
35814817--35814931	27	4.3	26	82	4	122	44	17	8	29	1.79
35814817--35814937	54	2.2	55	81	7	140	44	16	9	29	1.78
35815782--35816284	27	18.7	27	87	0	695	39	21	7	31	1.82
35815782--35816380	27	22.3	26	81	6	473	39	20	8	31	1.82
35816286--35816445	27	5.9	27	72	11	103	34	20	8	36	1.83
35816318--35816445	54	2.4	54	73	2	123	34	20	7	37	1.81
35816436--35816673	27	8.9	27	86	1	282	36	18	20	23	1.94
35816436--35816648	81	2.6	81	90	0	311	38	18	19	23	1.94
35816922--35816985	33	2.0	32	84	3	83	20	23	20	35	1.96
35816947--35817006	27	2.3	26	85	2	75	21	23	20	35	1.96
35817125--35817296	6	27.8	6	69	18	104	19	18	14	47	1.83
35817153--35817223	19	3.8	19	83	10	92	18	19	15	46	1.84
35817125--35817291	25	6.7	25	77	10	100	19	18	14	46	1.84
35817153--35817223	37	1.9	37	91	0	115	18	19	15	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35817126--35817317	62	3.1	62	82	4	228	19	18	14	47	1.82
35817196--35817296	37	2.7	37	79	10	107	20	17	13	47	1.82
35817274--35817317	12	3.7	12	78	0	52	22	15	9	52	1.71
35818342--35818421	41	2.0	41	97	0	151	22	20	28	28	1.98
35818566--35818630	22	3.0	22	77	8	78	18	26	23	32	1.97
35821405--35821459	28	1.9	29	88	3	85	21	45	20	12	1.84
35831923--35832006	28	3.2	28	67	25	83	29	29	16	23	1.96
35831879--35832106	50	4.6	50	80	10	232	31	26	17	25	1.97
35837667--35837851	40	4.6	39	81	5	194	23	22	28	25	1.99
35837667--35837851	79	2.3	81	83	9	229	23	22	28	25	1.99
35837720--35837874	79	2.0	79	83	5	197	25	20	28	25	1.99
35842511--35842748	50	4.8	50	82	4	266	30	27	17	24	1.97
35844047--35844071	13	1.9	13	100	0	50	0	48	28	24	1.52
35845441--35845798	47	7.6	47	92	1	572	28	29	7	33	1.85
35845441--35845798	190	1.9	188	93	1	617	28	29	7	33	1.85
35848508--35848689	79	2.3	81	83	7	230	25	28	21	24	1.99
35848508--35848689	40	4.6	40	84	6	228	25	28	21	24	1.99
35853105--35853494	40	9.8	40	94	0	658	25	29	21	23	1.99
35853105--35853494	198	2.0	200	92	1	658	25	29	21	23	1.99
35854906--35855216	47	6.6	47	93	1	505	28	30	8	33	1.86
35854956--35855034	25	3.3	25	66	16	76	31	29	5	34	1.79
35854906--35855216	143	2.2	141	94	1	541	28	30	8	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35878581--35878695	42	2.7	42	76	5	117	27	13	26	32	1.93
35882671--35882854	40	4.6	40	82	6	196	23	20	27	28	1.99
35882671--35882851	80	2.3	81	83	9	221	23	20	27	27	1.99
35882752--35882901	40	3.8	38	80	8	122	24	22	28	24	1.99
35896596--35896772	40	4.5	39	84	4	180	25	20	27	25	1.99
35896602--35896772	80	2.2	78	82	4	209	25	21	28	25	1.99
35898298--35898361	21	3.3	21	66	20	66	37	0	23	39	1.55
35898291--35898365	37	2.0	37	100	0	150	37	0	25	37	1.56
35899079--35899218	47	3.0	47	94	3	241	29	12	14	43	1.82
35900024--35900192	45	3.9	45	79	12	158	26	20	27	26	1.99
35902961--35903190	39	5.9	39	86	8	310	26	27	20	25	1.99
35902961--35903190	114	2.0	118	87	8	339	26	27	20	25	1.99
35910628--35910888	119	2.2	121	87	5	388	27	26	20	24	1.99
35910628--35910888	40	6.6	40	87	4	359	27	26	20	24	1.99
35929159--35929207	21	2.3	21	75	0	53	34	26	18	20	1.95
35929238--35929356	42	2.8	41	79	12	125	30	26	18	25	1.98
35929238--35929411	43	4.1	41	75	12	129	34	25	15	24	1.95
35937245--35937283	11	3.7	11	80	13	55	35	10	20	33	1.86
35937244--35937320	20	3.8	20	89	0	118	36	10	18	35	1.85
35937370--35937442	26	2.8	26	97	0	137	27	24	23	24	2.00
35942582--35942709	28	4.5	28	88	2	175	28	12	25	32	1.92
35942582--35942709	57	2.2	57	88	2	186	28	12	25	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35952467--35952594	29	4.5	28	88	2	175	32	25	12	28	1.92
35952466--35952594	57	2.3	57	87	2	188	32	26	12	28	1.92
35953999--35954110	6	18.0	6	68	17	68	49	13	17	19	1.80
35953998--35954110	31	3.6	31	90	3	156	49	13	17	19	1.79
35954042--35954099	19	3.4	19	65	30	58	46	17	17	18	1.84
35954252--35954347	27	3.5	28	84	5	117	35	21	22	19	1.96
35954506--35954570	22	3.0	22	77	8	69	33	21	23	21	1.97
35955024--35955190	27	6.2	27	88	4	221	24	19	20	35	1.95
35957715--35957847	40	3.3	40	87	4	171	26	21	26	26	1.99
35958075--35958286	47	4.5	47	92	0	334	31	8	31	27	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250