genome.fa.s9.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  94  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30491828--30491881	27	2.0	27	100	0	108	18	37	25	18	1.94
30500261--30500316	28	2.0	28	92	0	94	32	3	28	35	1.74
30500547--30500607	6	10.3	6	78	16	65	77	0	3	19	0.91
30500547--30500607	10	5.8	10	71	17	52	77	0	3	19	0.91
30500547--30500594	17	2.9	16	87	9	69	77	0	4	18	0.93
30505783--30505860	41	1.9	41	94	0	138	43	15	16	24	1.86
30513693--30513847	53	2.9	54	77	10	135	30	11	21	36	1.89
30513706--30513847	27	5.3	27	76	13	141	31	10	19	38	1.86
30516999--30517192	40	4.9	40	82	4	178	25	22	26	25	2.00
30516999--30517182	80	2.3	81	85	5	241	26	22	26	25	2.00
30526850--30527033	40	4.6	41	83	9	238	25	22	26	25	2.00
30529180--30529218	20	1.9	21	85	15	55	28	5	15	51	1.64
30531176--30531280	43	2.5	43	81	4	124	31	25	18	24	1.97
30544906--30544943	19	2.0	20	85	15	53	39	23	0	36	1.55
30545173--30545343	93	1.8	93	92	0	288	28	28	21	21	1.99
30545168--30545340	46	3.7	46	78	10	199	29	27	21	21	1.99
30557005--30557046	18	2.1	21	87	12	63	4	35	2	57	1.33
30558645--30558684	20	2.0	20	95	0	71	27	7	15	50	1.70
30564115--30564163	21	2.3	22	79	10	57	46	4	12	36	1.60
30567772--30567835	25	2.5	25	79	5	74	23	26	23	26	2.00
30574284--30574460	46	3.9	44	77	11	167	22	19	28	29	1.98
30574282--30574452	93	1.8	93	88	0	261	22	19	28	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30577387--30577442	15	3.7	15	88	7	87	12	16	10	60	1.58
30579828--30579995	46	3.8	45	85	9	231	22	18	28	30	1.97
30583484--30583616	49	2.7	49	90	0	212	24	16	27	31	1.96
30586623--30586676	15	3.6	15	73	9	56	11	14	14	59	1.62
30589152--30589284	49	2.7	49	90	0	203	25	18	25	30	1.98
30590831--30590878	21	2.2	22	92	7	89	33	8	16	41	1.78
30594126--30594284	42	3.8	41	73	9	106	32	28	14	25	1.95
30596194--30596253	29	2.1	29	90	0	93	30	26	15	28	1.96
30596465--30596516	16	3.2	16	94	0	86	15	23	13	48	1.80
30596489--30596523	8	4.4	8	85	0	52	11	22	20	45	1.82
30600766--30600825	29	2.1	29	93	0	102	30	26	11	31	1.92
30601039--30601083	16	2.8	17	80	6	58	11	22	20	46	1.81
30603570--30603659	45	2.0	46	82	6	112	26	32	5	35	1.80
30603676--30603751	22	3.3	22	66	28	59	26	30	11	31	1.92
30603796--30603869	23	3.2	23	64	17	62	32	28	9	29	1.88
30603673--30603886	47	4.6	47	89	0	311	27	27	11	34	1.91
30603673--30603917	47	5.2	47	87	0	301	28	28	10	33	1.89
30606774--30606895	51	2.4	51	91	0	199	50	9	22	17	1.74
30608023--30608189	40	4.2	40	89	5	234	24	23	26	25	2.00
30608023--30608189	79	2.1	79	86	6	232	24	23	26	25	2.00
30614750--30614868	49	2.4	50	91	4	195	48	11	21	17	1.79
30615997--30616243	40	6.2	40	90	3	358	24	22	26	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30620882--30620923	20	2.1	20	90	0	66	16	26	35	21	1.94
30622583--30622642	27	2.3	26	82	2	66	21	21	20	36	1.95
30638878--30638937	29	2.1	29	90	0	93	23	30	8	38	1.84
30640798--30640824	9	3.0	9	100	0	54	33	11	0	55	1.35
30644907--30645078	46	3.7	45	79	11	197	28	26	21	23	1.99
30644912--30645082	93	1.8	93	93	2	299	28	27	21	22	1.99
30649827--30649945	40	3.0	40	92	0	202	23	20	26	30	1.98
30649828--30649986	80	2.0	80	84	9	209	22	22	25	29	1.99
30661335--30661510	46	3.8	45	80	11	205	21	20	29	28	1.98
30661331--30661502	93	1.8	93	93	2	301	20	20	30	27	1.98
30663292--30663616	123	2.6	122	96	1	596	26	21	25	25	2.00
30663708--30663749	20	2.1	20	82	8	50	16	40	23	19	1.91
30675939--30676021	25	3.2	25	65	18	60	25	26	9	38	1.86
30675837--30676045	54	3.9	54	88	2	303	23	25	13	36	1.92
30675915--30675997	29	3.0	28	66	18	75	22	25	12	39	1.89
30678618--30678659	23	1.9	23	85	9	61	69	0	2	28	1.01
30679695--30679732	15	2.5	15	87	8	51	50	5	2	42	1.39
30679942--30679996	17	3.3	17	92	2	85	9	27	5	58	1.51
30682083--30682190	43	2.5	43	81	3	128	30	14	22	32	1.94
30685624--30685753	39	3.3	39	95	0	233	24	31	24	19	1.98
30685624--30685814	39	4.9	39	87	3	201	26	31	23	18	1.98
30685624--30685796	78	2.2	77	85	4	222	26	31	23	19	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30687920--30687998	31	2.5	31	93	0	140	27	25	17	29	1.98
30688022--30688113	42	2.2	42	90	0	139	33	21	15	29	1.94
30688258--30688380	26	4.8	26	92	1	196	27	22	23	26	2.00
30688817--30688857	17	2.4	17	95	4	73	21	29	31	17	1.96
30689166--30689234	27	2.6	27	79	9	70	23	23	21	31	1.98
30689296--30689544	27	8.8	27	70	17	71	32	7	17	42	1.77
30689331--30689440	29	3.6	29	75	21	125	31	6	14	47	1.69
30689309--30689444	64	2.1	64	98	0	263	33	5	13	46	1.68
30689450--30689544	27	3.6	26	80	4	118	28	8	22	41	1.83
30689582--30689664	27	3.1	27	85	3	114	44	9	19	26	1.81
30698666--30698785	56	2.1	56	98	0	231	45	9	23	22	1.81
30706796--30707015	40	5.6	38	86	5	255	25	21	27	25	2.00
30708733--30709024	47	6.2	47	87	0	406	27	30	9	32	1.88
30712577--30712685	37	2.9	37	95	0	191	26	31	19	22	1.98
30712826--30713463	48	13.0	48	92	3	1026	31	25	5	36	1.80
30712826--30713463	98	6.5	96	93	3	1026	31	25	5	36	1.80
30712826--30713463	146	4.3	145	93	2	1064	31	25	5	36	1.80
30717981--30718019	21	1.9	20	94	5	69	30	0	23	46	1.53
30717981--30718027	21	2.3	21	85	10	62	31	2	21	44	1.64
30735391--30735654	133	2.0	133	94	5	471	25	20	26	28	1.99
30743979--30744102	61	2.0	61	100	0	248	24	9	20	45	1.80
30748063--30748099	5	7.6	5	82	17	51	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30748066--30748106	19	2.2	19	100	0	82	41	0	0	58	0.98
30753332--30753361	14	2.1	15	93	6	53	56	13	10	20	1.65
30758811--30758843	6	5.5	6	96	0	57	81	0	3	15	0.80
30766316--30766377	26	2.4	26	86	10	83	37	11	16	35	1.84
30772366--30772460	25	3.8	25	84	5	129	28	22	24	25	1.99
30772366--30772460	50	1.9	50	91	0	154	28	22	24	25	1.99
30772508--30772556	20	2.4	21	89	3	73	38	18	8	34	1.80
30772508--30772556	11	4.7	11	75	14	50	38	18	8	34	1.80
30779197--30779291	25	3.8	25	95	0	172	26	21	26	26	1.99
30779184--30779291	50	2.2	50	91	5	175	25	21	24	28	1.99
30779340--30779386	20	2.3	21	88	3	69	31	19	12	36	1.89
30782568--30782654	30	2.9	30	84	0	102	25	32	25	17	1.97
30782946--30783187	41	6.0	41	87	2	310	33	22	23	21	1.98
30782946--30783187	81	3.0	82	87	2	319	33	22	23	21	1.98
30782946--30783187	122	2.0	122	84	4	319	33	22	23	21	1.98
30784211--30784241	15	2.1	15	93	0	53	58	0	9	32	1.31
30791501--30791526	12	2.2	12	100	0	52	34	7	26	30	1.85
30795191--30795238	21	2.3	21	100	0	96	22	18	58	0	1.39
30795529--30795767	43	5.6	43	84	4	304	28	18	23	30	1.97
30795529--30795767	85	2.8	85	83	6	295	28	18	23	30	1.97
30800060--30800197	55	2.5	55	85	2	179	27	26	31	13	1.94
30807087--30807183	41	2.4	41	89	0	140	25	27	24	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30810955--30811029	27	2.8	28	75	6	73	42	13	21	22	1.87
30813777--30813801	13	1.9	13	100	0	50	28	40	32	0	1.57
30817017--30817122	27	3.9	27	81	9	126	37	21	22	17	1.94
30817016--30817119	54	1.9	54	88	3	156	38	20	23	18	1.93
30824361--30824472	27	4.2	26	80	7	125	34	22	24	18	1.96
30824363--30824469	54	2.0	54	85	3	144	35	20	24	19	1.96
30825686--30825718	17	1.9	17	93	0	57	78	0	21	0	0.75
30826423--30826517	50	1.9	50	86	0	136	30	27	16	25	1.97
30828937--30829175	50	4.8	50	86	1	311	25	27	18	28	1.98
30830019--30830111	32	2.9	32	90	0	105	34	10	25	29	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250