genome.fa.s9.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  124  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39822274--39822338	34	1.9	33	87	3	94	32	24	20	23	1.98
39838360--39838589	40	5.8	40	87	1	293	25	23	26	23	2.00
39849030--39849062	16	2.0	17	94	5	59	15	12	6	66	1.42
39850811--39850909	22	4.5	22	83	5	128	33	29	25	12	1.92
39851445--39851482	19	2.0	19	85	10	51	21	34	23	21	1.97
39853086--39853189	54	1.9	54	80	0	118	24	26	23	25	2.00
39864688--39864770	43	1.9	43	82	4	105	30	25	16	27	1.97
39874259--39874283	13	1.9	13	100	0	50	8	48	20	24	1.76
39876938--39877013	15	5.0	15	73	7	64	30	25	2	42	1.69
39879742--39879801	23	2.5	24	78	10	70	23	20	16	40	1.91
39892297--39892520	40	5.7	40	82	6	233	24	27	21	25	1.99
39892297--39892520	79	2.8	78	80	6	238	24	27	21	25	1.99
39894321--39894523	47	4.3	47	89	3	286	29	30	7	33	1.86
39894413--39894488	22	3.3	22	68	22	66	27	31	9	31	1.88
39894435--39894513	25	3.3	25	70	22	87	32	31	3	31	1.76
39898038--39898203	46	3.7	46	80	10	175	27	18	28	25	1.98
39910058--39910377	95	3.4	95	84	0	399	32	13	13	40	1.84
39910233--39910552	173	1.8	173	87	2	473	34	13	11	40	1.81
39910156--39910641	268	1.8	268	84	0	659	33	13	11	40	1.82
39910408--39910677	95	2.8	95	79	5	303	34	16	9	38	1.82
39910569--39910883	132	2.4	131	81	2	351	35	16	11	36	1.86
39912129--39912304	46	3.8	46	77	10	196	22	19	27	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39912128--39912296	93	1.8	93	92	0	284	22	19	27	30	1.98
39915218--39915296	15	5.4	15	77	10	83	10	17	13	58	1.63
39915210--39915295	29	3.0	29	81	10	95	10	17	15	56	1.65
39921062--39921094	6	5.5	6	92	0	57	15	27	0	57	1.38
39933240--39933344	53	2.0	53	82	0	129	19	25	18	37	1.94
39936081--39936350	40	6.8	40	93	2	402	27	28	21	22	1.99
39942893--39942957	32	2.0	32	93	0	112	35	12	6	46	1.66
39943967--39944017	13	3.9	13	77	10	59	35	7	19	37	1.81
39944889--39944961	27	2.7	27	87	4	94	23	19	19	38	1.93
39944888--39944981	27	3.5	27	83	2	91	24	19	18	38	1.93
39951616--39951703	42	2.1	42	93	0	149	23	27	26	22	2.00
39954956--39955013	27	2.1	28	83	3	73	39	15	15	29	1.88
39958436--39958702	46	5.8	46	89	1	356	38	15	24	21	1.92
39958438--39958707	139	1.9	138	85	2	371	37	15	24	22	1.93
39968688--39968721	16	2.2	15	89	5	50	44	0	0	55	0.99
39975784--39975868	31	2.8	31	92	1	145	21	25	20	32	1.97
39976075--39976134	26	2.4	25	81	10	68	30	20	18	31	1.96
39976088--39976183	26	3.8	26	81	2	90	25	20	26	28	1.99
39993579--39993676	33	2.9	33	84	7	108	36	22	10	30	1.87
39993891--39994046	41	3.8	41	89	6	235	28	22	20	28	1.98
39994527--39994579	24	2.3	22	81	15	63	32	15	0	52	1.42
39999113--39999399	147	2.0	147	92	2	488	38	17	15	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40004743--40004816	25	2.9	25	76	4	76	40	6	14	37	1.73
40006827--40006870	22	2.0	22	86	0	61	43	0	2	54	1.12
40011081--40011124	5	8.4	5	85	9	61	79	2	18	0	0.83
40011345--40011412	33	2.1	33	94	0	118	44	10	13	32	1.77
40011826--40011869	22	2.0	22	86	0	61	43	0	4	52	1.22
40013343--40013521	48	3.8	48	77	10	181	25	20	24	29	1.99
40016284--40016317	5	7.0	5	86	6	52	17	0	2	79	0.86
40016284--40016317	14	2.4	14	90	5	50	17	0	2	79	0.86
40019339--40019379	21	2.1	19	86	9	55	26	4	21	46	1.72
40024427--40024549	57	2.1	58	80	4	133	31	16	20	31	1.94
40027138--40027249	27	4.2	26	82	11	127	35	23	25	16	1.94
40027138--40027249	54	2.1	54	84	3	145	35	23	25	16	1.94
40032022--40032246	40	5.7	40	85	5	287	24	21	28	25	1.99
40032029--40032279	119	2.1	119	80	7	269	26	20	27	25	1.99
40041202--40041410	40	5.2	39	76	16	180	24	21	27	26	1.99
40043875--40043905	8	4.0	8	95	4	55	0	9	0	90	0.46
40050344--40050466	55	2.2	56	88	2	176	26	12	28	33	1.92
40050344--40050466	28	4.4	28	90	2	176	26	12	28	33	1.92
40050369--40050479	28	4.0	27	90	3	116	28	11	26	33	1.91
40054407--40054630	40	5.6	40	86	3	297	24	23	26	25	2.00
40054411--40054630	83	2.7	80	87	5	293	23	23	27	25	2.00
40057095--40057124	8	3.9	8	95	4	53	0	10	0	90	0.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40069390--40069437	25	1.9	25	100	0	96	29	16	14	39	1.88
40073079--40073103	9	2.8	9	100	0	50	68	0	24	8	1.16
40073464--40073505	21	2.0	21	85	0	57	59	11	14	14	1.61
40074250--40074294	23	1.9	24	86	4	65	22	4	48	24	1.68
40074609--40074635	7	3.9	7	100	0	54	40	14	0	44	1.46
40090521--40090563	17	2.4	18	80	11	52	18	41	20	18	1.90
40090531--40090563	17	1.9	17	93	0	57	18	36	27	18	1.94
40092679--40092770	48	1.9	48	97	0	175	29	1	19	50	1.55
40092679--40092784	48	2.2	48	91	3	169	29	0	20	49	1.56
40094567--40094674	52	2.1	51	82	5	128	44	9	18	27	1.80
40094663--40094696	13	2.6	13	85	0	50	64	2	17	14	1.40
40095656--40095756	46	2.2	46	96	0	184	35	25	11	26	1.91
40095656--40095771	46	2.5	46	90	2	153	37	24	10	27	1.88
40098947--40099027	37	2.2	38	95	4	148	32	13	23	30	1.93
40100228--40100260	17	1.9	17	93	0	57	51	0	27	21	1.48
40100280--40100737	229	2.0	229	99	0	898	32	16	17	33	1.92
40106931--40107200	49	5.6	47	76	6	170	24	28	20	27	1.99
40106979--40107200	49	4.6	49	80	8	233	22	28	20	27	1.99
40106977--40107203	98	2.4	95	84	5	280	22	28	20	27	1.99
40130660--40130714	17	3.1	17	84	5	65	45	14	3	36	1.63
40138218--40138395	61	3.0	60	72	16	161	43	1	3	51	1.28
40138310--40138368	26	2.3	25	85	8	82	40	0	1	57	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40138323--40138378	15	4.0	15	73	17	57	44	0	0	55	0.99
40138349--40138417	22	3.3	22	69	22	67	43	2	0	53	1.15
40138295--40138435	17	8.6	17	67	22	61	45	1	0	52	1.14
40138663--40138730	16	4.2	16	82	0	91	35	32	0	32	1.58
40141090--40141158	36	1.9	35	91	2	111	27	8	15	47	1.75
40146013--40146132	63	1.9	63	94	0	213	45	19	16	19	1.86
40147509--40147558	25	2.0	25	100	0	100	16	28	12	44	1.83
40151829--40151863	18	1.9	18	100	0	70	37	11	22	28	1.89
40152331--40152386	28	2.0	29	85	3	78	55	1	0	42	1.10
40152907--40152963	24	2.4	25	79	8	73	63	1	7	28	1.30
40153008--40153072	32	2.0	32	100	0	130	49	9	6	35	1.60
40156378--40156430	22	2.4	22	74	0	61	16	18	22	41	1.90
40156410--40156539	38	3.4	38	85	0	179	20	17	26	35	1.95
40157772--40157938	43	3.9	43	75	10	130	28	20	24	26	1.99
40157829--40157935	42	2.5	43	79	11	121	28	21	23	26	1.99
40158184--40158250	32	2.1	32	97	0	125	22	8	23	44	1.81
40160156--40160194	12	3.2	12	81	0	51	30	33	20	15	1.94
40164820--40164866	25	1.9	24	82	4	58	25	12	19	42	1.86
40166006--40166035	16	1.9	16	93	6	53	30	0	20	50	1.49
40170878--40170920	22	2.0	22	86	4	61	32	0	2	65	1.06
40174579--40174616	18	2.2	17	86	9	51	63	26	2	7	1.35
40176738--40176839	38	2.7	38	83	6	127	40	2	7	49	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40180528--40180588	25	2.4	25	86	0	77	21	24	16	37	1.93
40189340--40189408	28	2.5	28	85	4	95	49	17	5	27	1.69
40194674--40194732	30	2.0	31	90	6	95	18	8	5	67	1.35
40198899--40199070	79	2.2	80	87	5	242	26	21	27	25	1.99
40198848--40199070	119	1.9	120	83	6	292	26	21	27	25	1.99
40198848--40199070	40	5.6	39	85	3	234	26	21	27	25	1.99
40198899--40199093	79	2.5	79	84	6	200	27	21	26	25	1.99
40204444--40204697	48	5.3	48	76	1	222	26	24	18	29	1.98
40204445--40204697	96	2.6	96	83	4	289	26	24	18	30	1.98
40207787--40207825	13	2.8	14	84	7	53	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250