genome.fa.s9.2.7.7.80.10.50.1000.215.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  215  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66613878--66613954	22	3.2	25	72	20	81	33	6	1	58	1.32
66614905--66614964	7	8.6	7	88	0	93	28	1	13	56	1.47
66616035--66616132	27	3.6	27	70	22	87	33	4	5	57	1.40
66616017--66616154	56	2.5	56	96	0	258	39	2	7	50	1.45
66618931--66619179	50	4.8	50	85	4	284	20	29	24	26	1.99
66618930--66619179	100	2.4	104	88	6	357	20	29	24	26	1.99
66619274--66619304	13	2.4	13	94	0	53	54	12	0	32	1.38
66619516--66619573	30	1.9	30	89	0	89	31	24	3	41	1.71
66622007--66622372	126	2.9	126	83	2	459	27	17	16	37	1.92
66622596--66622634	6	6.8	6	88	11	64	33	51	0	15	1.44
66622600--66622631	16	2.0	16	100	0	64	31	56	0	12	1.37
66622588--66622644	22	2.6	22	80	0	78	45	40	0	14	1.44
66636305--66636363	22	2.7	21	78	17	66	1	23	3	71	1.11
66636327--66636371	15	3.1	15	82	14	51	2	20	6	71	1.20
66641390--66641425	18	2.0	18	100	0	72	27	11	11	50	1.72
66641438--66641517	40	2.0	40	100	0	160	15	20	12	52	1.74
66642199--66642234	12	3.1	12	84	8	56	66	2	0	30	1.06
66648625--66648665	21	2.0	21	90	0	64	19	29	21	29	1.98
66653457--66653530	34	2.1	37	82	14	93	55	1	6	36	1.35
66660387--66660420	17	2.0	18	88	11	54	38	0	0	61	0.96
66668171--66668230	28	2.4	25	75	21	63	23	1	11	63	1.37
66676066--66676099	6	5.7	6	92	0	59	14	17	0	67	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66677341--66677405	25	2.7	24	76	4	67	18	27	15	38	1.91
66677336--66677406	24	2.9	25	77	4	74	18	26	18	36	1.94
66677464--66677530	25	2.6	26	79	9	66	22	22	23	31	1.98
66678211--66678392	46	4.0	46	91	1	276	22	23	14	39	1.91
66680055--66680100	3	15.3	3	90	0	74	34	4	0	60	1.16
66684385--66684430	17	2.8	18	84	15	64	28	41	30	0	1.56
66686903--66687021	25	4.8	25	73	12	84	20	24	21	34	1.96
66693306--66693334	8	3.6	8	100	0	58	37	0	0	62	0.96
66693357--66693387	5	6.4	5	92	7	55	41	0	0	58	0.98
66694501--66694735	101	2.3	101	95	2	420	32	11	5	49	1.63
66699499--66699533	18	1.9	18	94	0	61	42	11	14	31	1.81
66699885--66699917	12	2.8	12	90	0	57	24	18	0	57	1.40
66701178--66701236	30	2.0	29	83	3	73	33	3	1	61	1.23
66701699--66701729	15	2.1	15	93	0	53	64	35	0	0	0.94
66709418--66709456	19	2.0	20	85	5	53	33	0	7	58	1.26
66709558--66709587	6	5.0	6	91	0	51	86	13	0	0	0.57
66710068--66710114	14	3.4	14	85	5	60	12	2	2	82	0.84
66711649--66711841	50	3.8	50	89	0	287	20	29	23	26	1.99
66711936--66711966	13	2.4	13	94	0	53	54	12	0	32	1.38
66712179--66712236	30	1.9	30	85	0	80	32	22	3	41	1.71
66721322--66721372	11	5.0	10	76	9	50	45	1	5	47	1.38
66722519--66722672	43	3.6	43	80	3	166	29	27	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66722693--66722735	22	1.9	23	85	4	61	37	0	4	58	1.19
66725893--66726094	43	4.7	42	76	6	156	30	28	17	23	1.97
66725907--66726106	86	2.3	84	82	4	222	32	28	16	23	1.96
66725930--66726106	43	4.1	43	81	1	158	30	28	15	25	1.96
66726104--66726141	20	1.9	20	88	0	58	44	0	0	55	0.99
66731818--66731864	21	2.2	22	92	3	78	21	19	38	21	1.94
66733628--66733661	18	1.9	18	88	5	52	44	2	2	50	1.32
66733868--66733924	20	2.8	20	81	0	69	49	24	0	26	1.51
66734092--66734243	43	3.6	42	69	5	117	48	25	1	25	1.59
66734807--66734956	41	3.6	41	89	3	228	27	29	19	24	1.98
66734942--66735060	40	2.9	41	87	2	159	21	22	21	33	1.97
66736005--66736042	17	2.2	17	100	0	76	26	13	10	50	1.73
66736507--66736555	20	2.5	20	83	3	64	44	16	18	20	1.86
66739995--66740019	13	1.9	13	100	0	50	48	8	12	32	1.69
66745491--66745526	18	1.9	19	88	5	56	47	0	0	52	1.00
66745515--66745558	22	2.0	22	86	0	61	45	4	0	50	1.22
66745636--66745726	39	2.2	41	86	5	123	37	2	5	54	1.36
66745989--66746027	19	2.1	19	85	9	53	30	5	0	64	1.15
66748814--66748857	20	2.2	20	100	0	88	43	9	18	29	1.80
66752417--66752524	26	4.2	26	92	0	180	32	7	23	37	1.82
66755838--66756005	61	2.9	58	79	11	164	51	5	2	40	1.37
66755932--66756000	25	2.7	24	82	14	77	55	4	0	40	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66756863--66757137	139	2.0	139	87	2	401	30	18	12	38	1.87
66758081--66758123	22	2.0	22	86	9	61	53	0	2	44	1.13
66759000--66759042	18	2.4	18	76	0	50	18	11	0	69	1.17
66760019--66760124	40	2.6	41	86	4	144	25	16	25	32	1.97
66760086--66760360	114	2.4	113	81	5	295	32	23	20	24	1.98
66760313--66760411	41	2.4	41	77	8	103	29	22	19	29	1.98
66760047--66760593	269	2.0	266	82	3	650	30	22	19	27	1.98
66761144--66761186	15	2.9	14	82	3	50	20	0	37	41	1.53
66761151--66761220	14	5.1	13	73	14	52	20	0	30	50	1.49
66761174--66761232	28	2.1	28	84	6	75	23	0	20	55	1.43
66761682--66761706	13	1.9	13	100	0	50	24	0	36	40	1.55
66761747--66761771	7	3.6	7	100	0	50	16	12	28	44	1.83
66765771--66765820	23	2.2	23	96	0	91	34	14	16	36	1.88
66765932--66766418	241	2.0	241	97	0	920	34	17	14	33	1.91
66766599--66766804	9	21.6	9	76	11	187	46	21	0	31	1.58
66766616--66766771	39	4.0	39	97	0	294	45	22	0	31	1.57
66766599--66766789	39	5.1	37	91	5	262	46	21	1	30	1.59
66772337--66772384	21	2.3	21	96	0	87	20	20	58	0	1.40
66772723--66772820	43	2.2	44	92	1	171	26	21	23	28	1.99
66774440--66774827	209	1.8	212	93	2	683	40	11	6	40	1.68
66783523--66783573	22	2.3	22	100	0	102	25	23	19	31	1.98
66788071--66788138	30	2.3	30	84	5	84	47	5	19	27	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66790561--66790880	46	7.0	46	94	0	516	38	15	24	22	1.93
66797643--66797676	15	2.3	15	89	0	50	67	0	29	2	1.05
66798975--66799013	19	2.1	19	85	4	53	38	0	7	53	1.30
66802262--66802286	13	1.9	13	100	0	50	16	0	0	84	0.63
66804708--66804865	21	7.5	21	73	5	104	46	17	19	16	1.84
66804689--66804877	42	4.5	42	74	3	159	46	16	20	16	1.84
66805064--66805089	2	13.0	2	100	0	52	50	0	0	50	1.00
66805091--66805124	7	4.9	7	100	0	68	44	41	0	14	1.45
66805091--66805134	14	3.1	14	90	0	52	43	38	0	18	1.50
66805091--66805134	21	2.1	21	86	0	61	43	38	0	18	1.50
66815450--66815494	17	2.6	17	78	0	54	24	26	15	33	1.95
66815491--66815542	18	2.9	18	94	0	86	23	7	30	38	1.83
66818752--66818890	58	2.5	55	82	6	172	41	11	6	41	1.67
66827863--66827898	13	2.8	14	84	16	51	27	25	0	47	1.52
66827850--66827890	18	2.2	19	87	12	59	29	24	0	46	1.53
66827995--66828052	23	2.5	23	97	0	107	46	41	3	8	1.51
66828554--66828600	15	3.1	15	81	0	67	48	12	2	36	1.53
66829882--66829913	13	2.5	13	100	0	64	15	6	0	78	0.95
66832926--66833045	62	1.9	62	84	0	159	28	15	20	35	1.93
66837196--66837269	30	2.5	30	88	0	94	43	8	16	32	1.77
66843758--66844501	180	4.1	180	85	2	949	29	22	16	31	1.96
66844566--66844691	64	2.0	64	88	3	191	38	15	15	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66845625--66845729	54	1.9	56	90	3	169	13	20	20	46	1.83
66860527--66860593	26	2.6	27	83	9	95	14	19	23	41	1.89
66860662--66860709	24	2.0	23	84	4	60	16	25	20	37	1.93
66878983--66879125	39	3.7	39	92	0	225	23	21	28	26	1.99
66878972--66879135	78	2.1	77	88	1	238	24	21	27	26	1.99
66878988--66879153	78	2.1	78	85	3	219	22	23	28	25	1.99
66885632--66885796	39	4.2	39	95	0	285	21	21	29	27	1.99
66885632--66885866	39	6.0	39	86	4	271	21	21	28	28	1.98
66889447--66889495	19	2.6	19	96	0	89	63	10	8	18	1.50
66891039--66891138	29	3.5	27	69	16	85	38	11	5	46	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250