genome.fa.s9.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  155  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49962034--49962082	24	2.0	25	88	8	73	36	0	16	46	1.47
49962046--49962086	14	3.1	14	82	6	50	41	0	17	41	1.49
49963252--49963312	21	2.9	21	75	4	70	37	11	19	31	1.87
49965908--49965964	28	2.0	28	96	0	105	29	10	28	31	1.90
49968275--49968413	69	2.0	69	95	0	251	30	18	17	32	1.95
49981391--49981443	25	2.1	25	92	0	88	26	32	11	30	1.91
49986287--49986344	30	1.9	31	86	10	84	41	0	36	22	1.54
49987570--49987603	17	2.0	17	94	0	59	41	20	5	32	1.76
49997702--49997766	23	3.0	22	80	13	73	43	3	0	53	1.16
49999168--49999206	20	2.0	20	89	0	60	33	5	10	51	1.58
50003274--50003316	13	3.5	13	75	18	56	37	0	13	48	1.43
50003267--50003318	23	2.3	23	96	3	97	40	0	11	48	1.40
50004258--50004282	6	4.2	6	100	0	50	16	0	0	84	0.63
50006549--50006597	24	2.0	24	96	0	89	24	20	22	32	1.98
50009957--50010008	23	2.3	23	96	0	95	36	0	13	50	1.42
50009966--50010043	13	6.5	13	74	16	78	39	0	10	50	1.37
50009966--50010043	36	2.2	36	90	0	120	39	0	10	50	1.37
50010898--50010941	13	3.2	13	87	6	52	15	11	4	68	1.36
50012029--50012113	30	2.8	30	82	3	82	17	21	36	24	1.94
50014383--50014429	13	3.6	13	80	5	51	0	17	4	78	0.90
50014393--50014430	19	2.0	20	89	5	60	0	10	5	84	0.77
50015118--50015162	11	4.1	11	80	8	56	22	4	0	73	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50015118--50015146	4	7.5	4	92	7	51	24	0	0	75	0.80
50015204--50015289	34	2.6	32	77	17	86	17	5	3	73	1.18
50015220--50015273	28	2.0	26	82	13	65	14	7	5	72	1.26
50018956--50018995	19	2.0	20	90	4	64	35	0	12	52	1.39
50020326--50020381	28	2.0	29	82	3	69	46	23	16	14	1.83
50027202--50027349	44	3.4	44	78	1	154	33	15	19	31	1.93
50027187--50027349	87	1.9	87	84	0	218	33	14	20	31	1.92
50027295--50027400	51	2.1	51	82	3	124	35	16	17	29	1.93
50027343--50027431	44	2.0	44	91	0	142	31	19	21	28	1.97
50027413--50027516	42	2.5	42	87	3	156	35	14	18	31	1.91
50031202--50031308	43	2.5	43	79	0	106	29	15	26	28	1.96
50033889--50034020	40	3.3	40	78	7	142	31	20	19	28	1.97
50034326--50034534	14	14.4	14	70	12	82	21	1	32	44	1.63
50034394--50034430	15	2.6	14	86	4	56	18	0	35	45	1.50
50034447--50034501	21	2.6	20	77	11	65	20	0	43	36	1.52
50034491--50034533	21	2.0	21	86	0	59	18	0	25	55	1.42
50035418--50035567	72	2.1	73	83	3	187	9	35	4	50	1.55
50039406--50039509	23	4.5	23	93	0	172	33	1	20	44	1.62
50041264--50041305	22	1.9	22	90	0	66	30	4	11	52	1.59
50042184--50042291	26	4.2	26	91	0	180	33	7	24	35	1.83
50043776--50043828	26	2.0	26	85	7	72	39	22	13	24	1.90
50046704--50046744	21	2.0	21	85	9	57	12	24	17	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50046701--50047158	93	4.9	92	76	6	377	20	18	15	45	1.85
50051295--50051526	115	2.0	115	97	0	437	35	11	18	34	1.87
50062690--50062750	31	2.0	31	83	6	79	42	8	13	36	1.74
50062746--50062801	29	1.9	29	82	7	69	37	10	12	39	1.78
50065195--50065230	2	18.0	2	94	0	63	50	2	0	47	1.15
50066851--50066910	12	5.3	11	75	13	50	66	1	0	31	1.01
50067076--50067146	25	2.7	26	76	10	74	56	4	1	38	1.28
50067378--50067413	18	1.9	19	88	5	56	16	0	30	52	1.44
50073105--50073185	42	1.9	42	100	0	162	32	12	13	41	1.82
50076938--50076985	24	2.0	24	87	0	69	20	50	6	22	1.71
50080131--50080172	20	2.1	20	100	0	84	38	9	23	28	1.86
50082235--50082286	11	4.9	11	75	17	56	42	1	1	53	1.23
50082215--50082286	37	2.0	36	84	13	94	41	1	4	52	1.29
50086437--50086837	200	2.0	200	94	0	696	35	10	22	31	1.88
50090721--50090782	27	2.3	27	80	5	63	27	4	16	51	1.64
50091613--50091658	12	3.8	12	79	0	56	30	4	17	47	1.67
50093673--50093717	20	2.2	21	77	18	51	42	2	6	48	1.41
50093859--50093928	32	2.2	32	87	2	97	34	15	10	40	1.81
50095056--50095103	22	2.2	22	92	0	78	33	8	10	47	1.68
50098096--50098178	43	1.9	43	90	0	130	31	24	19	25	1.98
50098928--50098957	13	2.2	14	94	5	53	53	10	0	36	1.35
50103214--50103342	40	3.2	40	84	4	170	24	20	21	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50113784--50113822	20	2.0	19	85	14	53	71	0	0	28	0.86
50116586--50116615	10	3.0	10	100	0	60	70	20	0	10	1.16
50116588--50116642	26	2.1	26	83	12	69	74	18	0	7	1.04
50119251--50119287	14	2.5	15	86	8	58	27	8	0	64	1.21
50120479--50120515	14	2.6	14	86	4	56	21	2	16	59	1.49
50121085--50121341	128	2.0	128	100	0	514	31	16	16	35	1.91
50122419--50122456	8	4.8	8	83	9	51	55	0	0	44	0.99
50122419--50122448	15	2.0	15	93	0	51	56	0	0	43	0.99
50124578--50124616	19	2.1	18	85	9	51	48	2	7	41	1.45
50126960--50126996	6	6.2	6	93	0	65	16	45	0	37	1.47
50126962--50127005	18	2.4	18	88	0	61	15	47	2	34	1.58
50131505--50131604	33	3.0	33	85	0	128	28	35	30	7	1.83
50131569--50131743	42	4.2	42	78	6	167	37	31	21	9	1.86
50131569--50131743	84	2.1	83	82	8	203	37	31	21	9	1.86
50132968--50133004	16	2.3	16	86	13	58	40	2	0	56	1.13
50135935--50135974	16	2.4	17	91	4	64	50	2	0	47	1.14
50138661--50138693	15	2.3	15	89	5	50	42	0	3	54	1.15
50146392--50146442	15	3.5	15	72	5	50	47	23	0	29	1.52
50146566--50146665	29	3.6	29	69	26	81	19	1	31	49	1.55
50146677--50146801	41	3.1	40	91	1	196	18	22	24	34	1.96
50150849--50150898	26	1.9	26	83	0	64	52	2	2	44	1.24
50151152--50151195	23	1.9	23	86	9	63	29	38	13	18	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50152676--50152705	15	2.0	15	93	0	51	66	10	6	16	1.41
50153814--50153860	19	2.5	18	81	18	60	27	4	0	68	1.08
50153815--50153856	16	2.6	16	85	10	59	28	4	0	66	1.12
50158167--50158196	9	3.4	9	95	4	53	23	30	13	33	1.93
50166202--50166315	43	2.6	43	85	1	138	35	21	19	22	1.96
50166509--50166621	43	2.6	44	78	4	122	38	21	16	23	1.93
50174649--50174729	41	2.0	41	97	0	153	34	30	9	24	1.88
50176435--50176476	19	2.2	19	83	8	50	35	0	4	59	1.19
50176540--50176567	14	2.0	14	100	0	56	28	14	7	50	1.69
50177241--50177273	16	2.1	16	100	0	66	51	18	6	24	1.68
50181534--50181643	43	2.6	42	82	2	139	29	13	25	31	1.94
50184377--50184432	8	7.0	8	84	8	53	33	0	3	62	1.12
50186617--50186694	39	2.0	39	100	0	156	33	12	23	30	1.92
50190744--50190797	26	2.1	26	96	0	99	27	12	22	37	1.91
50190770--50190854	35	2.4	35	82	7	102	29	12	23	34	1.92
50192688--50192720	17	1.9	17	93	0	57	27	9	9	54	1.62
50193876--50193919	22	2.0	22	100	0	88	22	31	18	27	1.97
50195048--50195090	15	2.8	15	80	16	52	34	0	4	60	1.17
50195176--50195224	19	2.7	18	78	6	53	12	0	12	75	1.05
50195821--50196077	128	2.0	128	95	0	460	30	17	18	32	1.95
50196655--50196844	6	30.7	6	81	8	193	20	6	13	59	1.57
50196631--50196844	18	11.6	18	77	7	169	21	7	13	58	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50196631--50196838	48	4.2	48	77	11	186	21	7	12	58	1.59
50199461--50199522	28	2.2	28	94	0	106	35	22	8	33	1.84
50199634--50199723	28	3.2	27	82	7	110	21	24	22	32	1.98
50199644--50199734	27	3.2	28	82	4	94	23	26	18	31	1.97
50199634--50199748	55	2.1	56	82	8	137	20	24	20	34	1.96
50201890--50202112	67	3.3	67	92	0	356	23	7	18	50	1.72
50202059--50202125	26	2.6	26	85	2	82	26	7	14	50	1.70
50201992--50202241	96	2.6	95	89	4	355	25	6	18	49	1.72
50204135--50204190	27	2.1	27	100	0	112	26	25	14	33	1.94
50204322--50204354	17	1.9	17	88	11	50	42	18	0	39	1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250