genome.fa.s9.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  98  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31779565--31779612	20	2.4	20	82	0	69	29	18	29	22	1.98
31781202--31781240	18	2.1	19	85	4	53	7	23	2	66	1.30
31781204--31781307	48	2.2	49	79	8	115	12	27	0	58	1.40
31781258--31781307	18	2.8	18	87	0	73	14	28	0	58	1.37
31781233--31781314	24	3.4	24	77	0	101	12	26	0	60	1.31
31781311--31781407	42	2.3	42	89	1	142	14	22	5	57	1.57
31789907--31789996	29	3.2	29	61	12	69	42	14	8	34	1.77
31808045--31808077	17	1.9	17	100	0	66	15	30	18	36	1.91
31809031--31809088	29	2.0	29	100	0	116	34	20	13	31	1.92
31809564--31809597	6	5.7	6	92	0	59	64	14	0	20	1.28
31810029--31810130	52	2.0	52	90	0	159	30	27	18	23	1.98
31819778--31820073	50	5.9	50	76	3	227	28	16	24	31	1.96
31821260--31821287	14	2.0	14	100	0	56	50	14	7	28	1.69
31821918--31822111	43	4.6	41	75	12	178	28	26	19	25	1.99
31821913--31822111	85	2.3	85	93	0	335	27	27	19	25	1.99
31839429--31839523	40	2.4	40	82	12	115	26	26	16	30	1.97
31853919--31854136	40	5.6	40	81	12	208	24	28	22	24	1.99
31853947--31854084	39	3.7	36	89	6	172	25	28	21	24	1.99
31862020--31862241	39	5.6	39	79	6	189	24	27	22	25	2.00
31862020--31862234	79	2.7	81	79	7	226	25	26	21	26	2.00
31870430--31870614	40	4.7	40	82	7	200	24	21	27	26	1.99
31873910--31873940	16	1.9	16	93	0	53	48	19	22	9	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31874150--31874225	29	2.6	29	97	0	143	27	14	27	30	1.95
31874139--31874394	127	2.0	127	99	0	503	29	13	27	29	1.94
31874277--31874352	29	2.6	29	97	0	143	27	14	27	30	1.95
31876348--31876471	24	5.1	23	73	16	83	29	21	16	31	1.96
31876417--31876471	26	2.2	24	83	6	65	32	21	21	23	1.98
31884009--31884113	23	4.4	24	72	10	81	25	23	15	35	1.94
31884219--31884269	20	2.5	20	87	0	75	31	5	19	43	1.75
31888625--31888676	27	1.9	27	84	0	68	28	21	21	28	1.98
31889994--31890043	25	2.0	25	92	0	82	54	8	22	16	1.68
31901316--31901358	14	3.1	13	80	12	50	83	0	2	13	0.74
31901296--31901343	25	1.9	25	82	0	60	77	0	4	18	0.93
31901321--31901358	7	5.4	7	90	9	60	86	0	0	13	0.56
31906126--31906151	7	3.7	7	100	0	52	61	0	11	26	1.30
31906727--31906808	40	2.0	40	97	0	155	21	13	19	45	1.85
31915962--31916132	46	3.7	46	79	10	204	22	20	28	29	1.98
31915958--31916127	93	1.8	92	92	1	286	21	20	28	28	1.98
31916356--31916393	19	2.0	20	85	15	53	36	0	23	39	1.55
31928877--31928962	24	3.6	24	77	3	93	18	22	19	39	1.92
31928881--31929012	23	5.5	23	73	7	79	21	22	18	36	1.95
31928858--31928983	47	2.6	47	81	6	137	23	22	18	36	1.95
31936257--31936396	27	5.2	28	89	5	175	35	23	24	17	1.95
31937997--31938106	26	4.2	26	97	0	184	36	24	5	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31938964--31939053	38	2.4	38	90	0	135	22	22	23	32	1.98
31940540--31940659	60	2.0	60	98	0	231	44	5	19	31	1.72
31940730--31940863	43	3.1	43	84	0	178	14	21	32	32	1.93
31940993--31941181	58	3.3	58	91	3	289	23	18	28	29	1.98
31941020--31941178	29	5.5	28	71	10	124	22	20	27	29	1.98
31941107--31941203	28	3.4	28	71	7	79	20	17	34	27	1.95
31944791--31944910	38	3.1	38	86	2	168	20	20	25	33	1.97
31949258--31949412	43	3.6	43	81	6	147	29	16	23	31	1.96
31950404--31950557	40	3.8	40	91	0	245	30	25	18	24	1.98
31951973--31952140	46	3.7	46	79	11	191	23	18	27	30	1.97
31951966--31952135	93	1.8	92	89	1	268	22	19	27	30	1.98
31952364--31952401	19	2.0	20	85	15	53	36	0	23	39	1.55
31959530--31959702	46	3.7	46	80	10	208	21	20	27	30	1.98
31959527--31959697	93	1.8	93	92	0	288	21	20	28	29	1.98
31959924--31959961	19	2.0	20	85	15	53	36	0	23	39	1.55
31965305--31965393	45	2.0	45	95	4	162	37	23	12	26	1.90
31967367--31967609	40	6.2	39	89	5	307	24	21	27	26	1.99
31967367--31967609	78	3.1	79	88	4	323	24	21	27	26	1.99
31975019--31975263	40	6.2	40	89	2	325	25	20	27	26	1.99
31982389--31982477	40	2.2	40	91	0	142	29	28	19	23	1.98
31989817--31989987	93	1.8	93	85	0	243	21	21	28	29	1.98
31994225--31994409	79	2.3	81	84	7	236	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31994225--31994409	40	4.7	40	83	7	234	25	27	22	24	2.00
32067745--32068094	40	8.8	39	87	4	479	26	26	22	24	2.00
32067745--32068094	80	4.4	80	91	0	533	26	26	22	24	2.00
32069364--32069472	37	2.9	37	90	2	157	26	29	19	24	1.98
32069679--32069872	47	4.1	47	91	0	298	26	28	10	33	1.90
32069725--32069843	23	5.1	22	62	28	59	24	30	13	31	1.93
32075088--32075251	46	3.5	45	84	8	197	28	20	29	21	1.98
32075088--32075303	47	4.6	45	80	10	206	28	19	29	22	1.98
32079159--32079214	28	2.0	29	89	3	87	25	33	14	26	1.94
32084495--32084564	25	2.8	24	82	8	77	30	14	28	27	1.95
32084473--32084564	23	3.7	26	79	11	86	27	15	31	26	1.95
32086754--32086921	40	4.2	40	79	1	140	24	26	23	25	2.00
32092133--32092168	15	2.4	15	90	0	54	52	16	13	16	1.74
32093018--32093071	20	2.6	21	75	11	58	40	18	5	35	1.74
32095133--32095206	38	1.9	38	88	0	112	27	24	16	32	1.96
32095185--32095435	48	5.5	48	78	11	240	32	21	14	30	1.94
32095147--32095436	133	2.2	134	91	1	458	31	22	15	30	1.94
32095280--32095398	47	2.8	40	73	20	118	30	23	15	30	1.96
32095232--32095398	85	2.0	86	89	1	255	31	22	14	31	1.94
32096731--32096795	32	2.0	32	100	0	130	23	12	24	40	1.89
32120354--32120440	45	1.9	45	95	0	156	39	24	11	25	1.89
32123019--32123056	18	2.1	18	95	0	67	50	10	21	18	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32131104--32131196	45	2.1	45	97	0	177	21	31	29	18	1.97
32136935--32136999	28	2.3	28	89	0	94	32	26	7	33	1.85
32137104--32137166	28	2.2	29	88	8	94	22	22	23	31	1.98
32137114--32137177	28	2.2	28	86	2	83	25	25	18	31	1.98
32137630--32137668	19	2.1	19	85	0	51	15	5	7	71	1.26
32138135--32138168	10	3.3	10	84	8	50	29	8	8	52	1.62
32144655--32144719	28	2.3	28	91	0	103	32	27	7	32	1.85
32144825--32144887	28	2.2	29	88	8	94	22	22	23	31	1.98
32144835--32144898	28	2.2	28	86	2	83	25	25	18	31	1.98
32145351--32145389	19	2.1	19	85	0	51	15	5	7	71	1.26
32152648--32152733	43	2.0	43	100	0	172	41	9	20	27	1.83
32157829--32157911	43	1.9	43	87	0	121	24	13	26	36	1.92
32157822--32157935	43	2.7	43	76	10	115	25	15	26	32	1.96
32162172--32162249	40	2.0	40	89	0	120	41	15	14	29	1.86
32171882--32172010	47	2.8	48	84	8	151	31	20	27	20	1.98
32173150--32173190	22	1.9	22	85	14	59	12	46	24	17	1.82
32179728--32179872	43	3.4	42	83	10	152	24	16	26	32	1.96
32180083--32180136	27	2.0	27	100	0	108	33	3	29	33	1.75
32181967--32182121	43	3.7	43	80	10	194	29	27	18	25	1.98
32182715--32182746	15	2.1	15	94	0	55	53	25	0	21	1.46
32184639--32184767	47	2.7	47	84	0	159	33	27	17	22	1.96
32186673--32186728	25	2.3	23	77	16	60	33	17	26	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32197157--32197406	47	5.3	47	91	0	383	32	8	30	28	1.87
32198988--32199221	49	4.9	48	76	13	193	26	19	29	24	1.99
32199042--32199220	96	1.8	98	83	8	240	26	20	28	25	1.99
32202380--32202499	38	3.1	38	86	2	150	22	21	25	30	1.99
32204302--32204458	29	5.5	28	68	11	102	22	19	28	30	1.98
32204275--32204467	58	3.4	58	91	3	297	23	17	29	30	1.97
32204324--32204485	29	5.7	28	71	7	119	23	17	30	28	1.97
32206770--32206939	41	4.2	40	73	20	145	28	27	21	22	1.99
32211611--32211748	38	3.6	38	85	3	161	19	18	26	34	1.95
32216176--32216301	29	4.4	29	84	5	150	33	24	11	30	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250