genome.fa.s9.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  100  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32542502--32542576	37	2.0	37	100	0	150	16	21	16	46	1.83
32548448--32548501	28	1.9	28	100	0	108	25	22	3	48	1.67
32548451--32548507	28	2.2	25	84	12	71	26	22	3	47	1.67
32549316--32549504	55	3.5	53	84	5	227	21	24	18	35	1.95
32549549--32549634	45	1.9	45	90	0	136	17	25	22	34	1.95
32549639--32549724	44	2.0	44	83	0	109	26	19	12	40	1.88
32556080--32556194	20	5.8	20	74	0	95	35	18	24	21	1.95
32556109--32556196	40	2.2	40	80	8	108	37	19	22	20	1.94
32557302--32557495	48	4.0	48	83	2	228	28	17	26	28	1.97
32557310--32557492	96	1.9	96	88	0	276	28	16	26	27	1.97
32557309--32557528	48	4.6	46	76	9	183	29	16	26	27	1.97
32557309--32557524	96	2.3	94	83	7	256	29	16	26	27	1.97
32559796--32559841	18	2.6	18	78	0	56	50	8	17	23	1.74
32560218--32560397	27	6.7	27	88	0	252	40	18	15	26	1.90
32560188--32560397	81	2.6	81	90	1	314	40	18	14	26	1.89
32564206--32564350	43	3.4	43	85	5	143	30	22	17	29	1.97
32573681--32573706	12	2.2	12	100	0	52	38	23	7	30	1.83
32578260--32578319	30	2.0	30	87	3	86	30	25	5	40	1.77
32580244--32580274	13	2.4	13	100	0	62	19	29	25	25	1.99
32583637--32583670	17	1.9	18	88	5	52	8	23	44	23	1.81
32593969--32594010	20	2.1	20	95	0	75	35	4	7	52	1.50
32594305--32594437	45	3.0	44	70	9	112	24	18	27	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32596773--32596937	43	3.9	43	79	10	169	32	23	15	28	1.95
32600106--32600217	43	2.6	42	84	5	154	31	17	24	26	1.97
32603251--32603289	19	2.1	19	90	0	60	35	25	12	25	1.92
32613222--32613389	39	4.3	39	93	0	282	28	20	27	23	1.99
32613220--32613407	78	2.4	78	85	2	234	28	20	27	23	1.99
32616633--32616782	38	3.9	38	85	1	176	36	24	20	18	1.95
32616615--32616787	76	2.2	77	79	5	179	37	24	18	19	1.94
32618407--32618553	40	3.7	40	83	5	120	25	27	21	25	2.00
32618450--32618577	40	3.2	39	85	4	175	29	27	18	24	1.98
32618413--32618633	80	2.8	80	79	7	193	27	26	20	25	1.99
32618453--32618633	80	2.3	80	83	9	210	27	27	20	24	1.99
32618454--32618633	40	4.5	40	79	8	163	27	27	20	24	1.99
32624855--32625149	78	3.8	78	94	1	495	30	17	25	25	1.97
32625089--32625317	45	5.1	45	74	8	205	30	14	27	27	1.95
32625667--32625764	35	2.7	37	87	12	150	37	10	16	35	1.82
32625667--32625757	19	4.9	19	92	8	161	37	10	15	36	1.83
32625667--32625781	19	5.9	22	87	10	98	37	9	15	37	1.80
32627231--32627373	39	3.7	39	88	2	200	23	16	29	31	1.96
32628527--32628565	20	2.0	20	100	0	78	28	10	15	46	1.78
32633853--32634032	53	3.4	54	78	8	197	24	25	14	36	1.93
32634011--32634132	47	2.6	47	92	0	199	26	23	13	36	1.93
32634147--32634268	45	2.6	47	78	12	135	21	22	20	36	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32634269--32634355	44	2.0	44	86	4	122	24	26	13	35	1.93
32638892--32638936	17	2.5	18	89	7	65	4	17	0	77	0.92
32644170--32644194	13	1.9	13	100	0	50	44	0	8	48	1.32
32647085--32647253	48	3.6	45	80	6	176	27	19	28	24	1.99
32648406--32648502	43	2.3	42	87	8	144	32	15	15	36	1.89
32653594--32654141	47	11.6	47	93	2	900	29	28	8	33	1.86
32653594--32654141	190	2.9	190	94	1	940	29	28	8	33	1.86
32657930--32657985	25	2.2	26	81	12	71	28	30	10	30	1.91
32658161--32658350	40	4.8	39	88	3	272	25	28	21	24	1.99
32659748--32660334	47	12.6	47	90	3	920	29	29	7	33	1.85
32664339--32664934	48	12.6	47	86	7	812	33	7	29	29	1.85
32664339--32664934	191	3.1	189	87	6	868	33	7	29	29	1.85
32666362--32666557	41	4.8	40	78	13	184	23	20	30	25	1.99
32666362--32666491	42	3.2	40	88	8	172	23	19	30	26	1.98
32666376--32666506	42	3.2	41	84	11	162	25	19	27	26	1.99
32666735--32666785	25	2.1	25	85	3	68	29	7	31	31	1.86
32670585--32671082	190	2.6	188	88	8	748	33	7	28	30	1.85
32670585--32671131	237	2.3	236	87	8	762	33	8	28	29	1.86
32670585--32671131	47	11.6	47	85	10	715	33	8	28	29	1.86
32677701--32677884	40	4.7	40	82	7	216	25	27	22	25	2.00
32677701--32677884	79	2.3	82	82	8	220	25	27	22	25	2.00
32684908--32685092	79	2.3	82	81	7	211	25	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32684908--32685092	40	4.7	40	79	7	207	25	27	22	25	2.00
32694413--32694620	81	2.6	81	87	1	292	25	12	21	40	1.88
32694413--32694641	27	8.5	27	84	1	262	26	13	20	40	1.89
32698529--32698640	43	2.6	43	83	5	138	33	16	13	35	1.88
32702104--32702369	94	2.8	91	80	10	272	26	19	28	25	1.99
32708105--32708129	6	4.2	6	100	0	50	32	16	0	52	1.44
32708467--32708509	13	3.3	13	78	12	52	30	20	0	48	1.50
32711384--32711559	46	3.8	46	76	12	180	28	27	21	21	1.99
32716886--32717060	46	3.8	46	77	10	194	28	29	21	21	1.98
32718581--32718643	32	2.0	32	100	0	126	33	6	22	38	1.79
32721399--32721557	43	3.7	43	75	10	155	21	20	28	30	1.98
32726843--32727365	48	10.9	48	78	0	544	28	19	26	25	1.99
32726843--32727365	96	5.4	96	91	0	830	28	19	26	25	1.99
32727814--32727839	9	2.9	9	100	0	52	19	0	11	69	1.18
32727877--32727993	50	2.3	53	89	5	179	35	14	13	36	1.86
32730470--32730528	6	9.3	6	75	17	57	76	1	18	3	1.02
32730479--32730549	27	2.6	28	86	8	101	73	2	19	4	1.13
32730522--32730567	21	2.2	21	84	0	56	65	4	23	6	1.35
32730870--32730897	13	2.2	13	100	0	56	21	7	32	39	1.80
32732197--32732328	50	2.6	51	82	3	167	35	14	12	37	1.83
32732954--32732982	12	2.4	12	100	0	58	37	6	24	31	1.82
32734467--32734505	21	1.9	20	84	5	51	17	38	23	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32736569--32736862	50	5.8	50	81	5	297	30	26	17	24	1.97
32736630--32736811	101	1.8	101	86	4	269	31	26	17	24	1.97
32743631--32743916	50	5.7	50	77	6	240	32	26	15	25	1.95
32743689--32743870	101	1.8	101	87	2	276	30	26	18	25	1.98
32743638--32743919	151	1.9	149	82	5	361	32	26	15	25	1.96
32755868--32755913	24	1.9	24	86	0	65	47	0	2	50	1.13
32759147--32759265	41	2.8	41	77	11	105	24	16	28	30	1.97
32760707--32760770	33	1.9	34	90	3	103	25	26	23	25	2.00
32760736--32760799	27	2.3	29	76	17	73	26	26	23	23	2.00
32760962--32761036	27	2.8	26	84	6	87	34	22	21	21	1.97
32761173--32761335	27	6.1	27	79	4	152	25	21	19	33	1.96
32771711--32771818	43	2.5	43	85	8	132	27	12	22	37	1.89
32774450--32774589	43	3.3	43	76	11	135	29	15	22	32	1.94
32776141--32776231	34	2.8	32	83	3	101	29	25	21	23	1.99
32783739--32783846	43	2.5	43	90	3	155	36	24	12	27	1.91
32783680--32783837	86	1.8	85	81	9	196	34	25	12	27	1.92
32785415--32785606	53	3.6	53	86	0	222	32	13	26	27	1.94
32785764--32785917	28	5.5	28	70	17	104	34	17	22	25	1.96
32785764--32785864	29	3.5	28	74	14	89	32	17	23	25	1.97
32785733--32785919	28	6.7	27	68	15	78	32	17	21	28	1.96
32785764--32785941	28	6.3	27	70	14	92	33	17	23	25	1.97
32786191--32786264	23	3.3	23	65	24	66	41	2	25	29	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32786212--32786287	25	3.2	25	63	24	65	43	5	22	28	1.75
32786197--32786287	45	2.0	45	97	0	173	45	4	21	28	1.71
32788863--32789064	40	5.1	40	87	3	275	24	23	25	26	2.00
32792443--32792569	51	2.5	51	93	2	211	50	9	23	16	1.74
32793687--32793929	39	6.2	40	89	7	349	23	22	27	25	2.00
32799440--32799656	40	5.4	40	88	3	289	24	23	26	25	2.00
32806888--32807032	40	3.6	40	85	4	175	25	23	26	24	2.00
32808608--32808660	26	2.0	25	82	13	63	24	26	13	35	1.92
32808918--32809041	27	4.5	28	82	6	128	29	25	13	32	1.94
32813277--32813309	17	2.1	17	88	11	52	48	18	21	12	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250