genome.fa.s9.2.7.7.80.10.50.1000.208.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  208  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64864031--64864215	88	2.1	88	97	0	352	48	17	1	33	1.54
64864083--64864191	54	2.1	51	84	6	139	48	18	0	32	1.54
64864141--64864219	34	2.3	34	91	4	122	49	15	1	34	1.52
64868341--64868395	29	1.9	29	96	3	103	41	18	18	21	1.90
64870846--64870959	33	3.5	32	82	7	133	36	13	23	26	1.91
64870953--64871037	31	2.7	31	81	0	107	29	18	24	27	1.98
64871127--64871178	27	1.9	27	92	0	86	42	9	25	23	1.84
64873183--64873211	14	2.1	14	93	6	51	34	0	10	55	1.34
64874001--64874135	43	3.2	43	80	3	157	25	17	25	31	1.97
64874019--64874182	85	1.9	86	81	1	195	26	18	23	30	1.98
64885259--64885284	13	2.0	13	100	0	52	30	38	15	15	1.88
64887932--64887961	15	2.1	14	93	6	51	76	23	0	0	0.78
64890068--64890114	23	2.0	24	88	8	71	61	0	6	31	1.21
64895596--64895708	55	2.1	55	96	0	208	40	2	11	45	1.54
64900085--64900112	3	9.3	3	100	0	56	67	0	32	0	0.91
64904291--64904352	30	2.1	30	84	3	81	25	3	16	54	1.56
64911469--64911533	21	3.2	21	73	20	75	10	26	23	40	1.87
64911451--64911550	39	2.6	39	95	0	173	12	26	25	37	1.90
64912784--64912836	28	1.9	27	84	3	70	30	1	5	62	1.29
64913457--64913510	25	2.2	25	100	0	108	37	11	12	38	1.79
64914675--64914706	12	2.6	13	90	9	50	18	6	25	50	1.70
64915570--64915659	45	2.0	45	100	0	180	42	17	13	26	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64916642--64917061	209	2.0	209	97	0	795	33	19	15	31	1.92
64920159--64920201	21	2.0	21	90	0	68	25	4	25	44	1.73
64922141--64922187	15	3.0	16	78	12	53	59	2	12	25	1.45
64923226--64923273	21	2.2	23	77	11	55	68	4	2	25	1.18
64923228--64923274	22	2.2	22	84	3	60	68	4	2	25	1.19
64929248--64929283	3	11.7	3	94	5	63	33	2	0	63	1.08
64935126--64935202	34	2.3	34	88	6	113	25	20	12	40	1.89
64953206--64953243	14	2.8	14	88	4	51	86	7	2	2	0.74
64953206--64953243	20	1.9	20	88	0	58	86	7	2	2	0.74
64957438--64957470	14	2.3	15	89	5	50	27	9	6	57	1.53
64957688--64957715	2	14.0	2	100	0	56	50	0	0	50	1.00
64960389--64960416	2	14.0	2	100	0	56	50	0	0	50	1.00
64965490--64965521	12	2.6	13	90	9	50	50	25	6	18	1.70
64965989--64966136	44	3.4	43	76	14	144	28	24	19	27	1.99
64968380--64968560	79	2.3	80	82	7	217	25	28	22	24	1.99
64968359--64968562	40	5.1	40	81	8	229	25	27	22	24	1.99
64977900--64978283	128	3.0	127	87	2	585	37	17	15	29	1.90
64987319--64987344	12	2.2	12	100	0	52	30	19	7	42	1.79
64992720--64992762	13	3.1	13	81	18	59	39	0	0	60	0.97
64992726--64992760	8	4.4	8	92	0	61	40	0	0	60	0.97
64992720--64992763	16	3.0	15	87	12	65	40	0	0	59	0.98
64998914--64999037	46	2.7	45	80	9	126	29	20	28	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64999049--64999172	49	2.5	49	82	3	142	29	19	27	23	1.98
65000454--65000573	46	2.6	46	85	6	154	35	26	18	20	1.95
65007914--65008051	46	3.0	46	83	1	159	34	22	19	23	1.97
65017540--65017604	22	3.0	22	95	0	112	30	53	6	9	1.57
65018620--65018663	15	2.9	15	90	6	63	34	0	2	63	1.07
65028862--65028899	18	2.1	18	90	0	58	7	10	2	78	1.04
65034708--65034927	109	2.0	109	92	0	368	29	21	15	33	1.95
65037340--65037645	46	6.5	46	72	13	160	30	19	26	23	1.98
65037331--65037600	92	2.9	91	77	10	244	29	19	26	24	1.98
65037839--65037931	46	2.0	46	100	0	186	31	12	17	38	1.87
65038151--65038217	33	2.0	33	97	0	125	22	10	20	46	1.81
65039614--65039930	27	11.7	27	84	0	373	38	20	8	32	1.83
65039884--65039998	27	4.3	27	85	2	124	34	16	19	29	1.94
65040510--65040696	6	30.3	6	71	17	98	19	16	14	50	1.78
65040513--65040630	25	4.5	25	78	12	110	20	16	14	48	1.81
65040510--65040605	31	3.3	30	74	16	103	19	17	14	47	1.82
65040532--65040623	31	3.2	31	73	17	106	20	17	15	46	1.84
65040510--65040636	56	2.3	56	90	0	200	20	15	14	49	1.79
65040575--65040682	37	2.9	37	80	4	119	18	14	14	51	1.76
65043299--65043376	37	2.1	37	100	0	156	32	21	10	35	1.87
65045826--65046366	183	3.0	183	93	0	911	25	24	21	28	1.99
65048506--65048531	3	8.7	3	100	0	52	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65056762--65056832	29	2.4	29	79	6	72	42	18	8	30	1.80
65058872--65058904	12	2.8	12	90	0	57	15	39	3	42	1.62
65060663--65060849	95	2.0	95	98	0	365	33	14	12	39	1.85
65060755--65060788	17	2.0	17	100	0	68	35	5	11	47	1.65
65061831--65061920	46	2.0	46	82	2	110	20	20	15	44	1.87
65061894--65061953	29	2.1	29	100	0	120	20	23	18	38	1.93
65061851--65061999	75	2.0	75	89	0	226	20	23	16	40	1.91
65061922--65062051	46	2.8	46	92	0	224	19	23	16	41	1.90
65068076--65068132	27	2.1	27	83	6	71	1	17	8	71	1.19
65068169--65068207	8	4.8	8	83	3	51	53	2	5	38	1.37
65068987--65069026	17	2.4	17	91	0	62	22	22	37	17	1.94
65069577--65069667	40	2.3	40	88	0	137	24	23	6	46	1.76
65071891--65071916	11	2.4	11	100	0	52	30	0	0	69	0.89
65074942--65075128	6	30.8	6	76	16	181	49	14	16	19	1.80
65074921--65075128	30	7.1	30	82	11	234	49	14	16	19	1.80
65074942--65075128	85	2.2	85	96	0	338	49	14	16	19	1.80
65075246--65075332	27	3.3	26	88	4	102	35	24	22	17	1.95
65075532--65075726	27	7.2	27	85	0	228	26	20	17	35	1.95
65075731--65076346	27	22.8	27	81	6	497	42	9	20	27	1.83
65075731--65076346	54	11.4	54	81	6	588	42	9	20	27	1.83
65075731--65076339	81	7.5	81	85	4	669	42	9	20	27	1.83
65077521--65077719	6	32.8	6	76	15	187	48	14	17	20	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65077500--65077682	30	6.3	30	80	12	202	48	14	16	20	1.81
65077521--65077682	85	1.9	85	96	0	297	48	14	16	20	1.80
65077837--65077921	27	3.3	26	83	8	84	35	22	22	20	1.96
65077859--65077921	27	2.3	27	91	5	101	34	25	22	17	1.95
65078120--65078315	27	7.3	27	85	0	221	26	20	18	34	1.95
65078320--65078989	27	24.8	27	84	4	744	41	9	21	27	1.84
65081014--65081108	40	2.4	40	92	0	163	35	18	18	26	1.95
65088321--65088456	40	3.5	39	69	13	102	30	21	23	25	1.99
65088320--65088467	75	2.0	75	85	2	199	29	22	23	25	1.99
65095876--65095909	6	5.7	6	85	0	50	17	38	0	44	1.49
65095877--65095909	12	2.8	12	100	0	66	18	39	0	42	1.50
65103771--65103985	106	2.0	106	98	0	412	41	20	13	24	1.88
65109013--65109063	24	2.1	24	92	0	84	31	15	7	45	1.75
65124167--65124207	21	2.0	21	90	0	64	29	21	29	19	1.98
65134165--65134215	21	2.4	21	93	0	84	31	37	7	23	1.83
65144132--65144165	16	2.3	15	90	10	52	5	17	0	76	0.98
65145258--65145319	15	3.8	17	80	19	71	70	1	0	27	0.96
65145258--65145319	32	1.9	33	84	15	85	70	1	0	27	0.96
65145350--65145412	5	12.2	5	80	15	67	74	0	0	25	0.82
65148612--65148656	22	2.0	22	86	0	63	68	4	6	20	1.29
65170870--65170955	28	3.0	29	77	5	75	47	2	0	50	1.14
65170870--65170954	29	3.0	28	79	6	73	47	2	0	50	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65171443--65171487	21	2.2	20	84	11	56	31	11	15	42	1.82
65173800--65173934	68	2.0	67	94	2	236	55	8	8	27	1.59
65178615--65178657	15	2.9	15	82	3	52	44	0	2	53	1.13
65180696--65180733	15	2.4	16	82	4	51	28	2	0	68	1.03
65181304--65181358	10	5.8	10	75	18	55	67	0	1	30	1.01
65181302--65181361	18	3.3	18	79	4	68	66	0	1	31	1.01
65181302--65181373	28	2.7	26	82	10	83	65	1	1	31	1.10
65186091--65186194	43	2.4	43	88	0	154	26	18	25	28	1.98
65187061--65187089	13	2.1	14	93	6	51	62	3	0	34	1.12
65192082--65192200	9	12.6	9	75	10	103	31	0	21	47	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250