genome.fa.s9.2.7.7.80.10.50.1000.175.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  175  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55862899--55862958	24	2.5	24	72	8	59	75	0	8	16	1.04
55863680--55863709	14	2.1	14	93	0	51	56	0	10	33	1.32
55866478--55866983	176	2.9	176	87	1	692	27	24	17	30	1.97
55873615--55873718	48	2.1	49	81	10	133	30	33	14	21	1.93
55875619--55875703	44	1.9	44	85	4	118	28	29	12	29	1.94
55875618--55875712	44	2.2	43	81	9	111	31	26	14	27	1.95
55875473--55875982	176	2.9	177	87	0	709	26	25	17	30	1.97
55888210--55888253	22	1.9	22	86	9	61	70	0	9	20	1.14
55888207--55888261	24	2.3	24	75	6	58	74	0	9	16	1.06
55891410--55891471	30	2.1	30	96	0	115	54	17	16	11	1.70
55893795--55893904	26	4.2	26	95	2	177	34	5	23	36	1.78
55895685--55895970	136	2.1	137	94	0	502	25	18	24	31	1.98
55897835--55897881	24	2.0	24	83	8	60	21	21	27	29	1.98
55900362--55900633	136	2.0	137	98	0	528	25	18	25	31	1.97
55903528--55903570	23	1.9	22	90	4	68	72	0	23	4	1.04
55906509--55906557	23	2.1	24	81	11	57	42	8	4	44	1.53
55907236--55907271	5	7.0	5	87	6	54	25	0	0	75	0.81
55907233--55907263	16	1.9	16	100	0	62	25	0	0	74	0.82
55912464--55912509	21	2.2	21	100	0	92	26	21	17	34	1.95
55912985--55913023	18	2.2	18	85	0	51	20	10	17	51	1.74
55916838--55916888	25	2.0	25	100	0	102	35	11	25	27	1.91
55917774--55918039	3	89.7	3	74	14	189	63	2	4	30	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55921670--55922003	97	3.5	95	78	8	361	37	20	10	31	1.87
55923514--55923538	7	3.6	7	100	0	50	48	0	0	52	1.00
55928929--55929062	64	2.1	64	84	0	169	36	26	20	17	1.94
55931795--55931850	24	2.3	25	87	3	78	32	10	1	55	1.45
55931891--55931940	19	2.4	21	77	16	59	32	10	0	58	1.31
55932152--55932251	52	1.9	52	100	0	200	20	14	11	55	1.69
55932961--55932994	17	2.0	17	94	0	59	55	0	5	38	1.24
55934169--55934251	24	3.5	24	84	0	103	22	10	30	36	1.89
55934169--55934281	48	2.4	48	83	5	131	23	11	30	35	1.90
55940427--55940460	17	2.0	17	94	0	59	55	0	5	38	1.24
55941301--55941476	46	3.8	46	76	12	189	20	21	28	29	1.98
55941297--55941469	93	1.9	93	92	0	292	20	21	29	28	1.98
55946342--55946470	46	2.8	46	89	2	197	20	21	28	29	1.98
55948907--55949013	24	4.5	24	90	0	133	21	12	30	35	1.90
55948907--55949042	48	2.8	48	80	4	150	22	13	30	33	1.92
55952050--55952083	17	1.9	18	88	5	52	64	29	5	0	1.17
55952899--55953224	131	2.5	130	89	2	489	34	20	18	26	1.95
55955070--55955117	10	4.5	10	76	23	53	33	2	0	64	1.05
55955040--55955117	23	3.3	24	77	13	81	35	1	0	62	1.03
55955064--55955117	3	18.0	3	75	21	51	33	1	0	64	1.04
55955444--55955488	22	2.1	21	83	4	54	37	2	0	60	1.09
55958679--55958804	45	2.8	43	82	9	146	29	24	19	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55958809--55959151	87	3.9	87	82	1	382	21	24	21	31	1.98
55958981--55959115	43	3.1	43	64	16	107	20	25	19	34	1.96
55958767--55959128	176	2.1	175	84	3	469	22	24	20	32	1.98
55970528--55970855	131	2.5	129	87	3	473	35	19	17	26	1.95
55980566--55980621	18	3.3	18	66	19	57	37	3	7	51	1.47
55980569--55980624	19	3.3	19	62	27	52	35	3	7	53	1.46
55980565--55980642	32	2.5	32	93	6	135	42	2	7	47	1.46
55984148--55984198	17	2.9	18	82	5	59	50	0	3	45	1.20
55984330--55984364	18	1.9	18	88	0	52	57	2	5	34	1.37
55984309--55984387	40	2.0	40	85	5	106	56	1	5	36	1.29
55984599--55984702	55	1.9	55	86	4	147	25	25	28	20	1.99
55985702--55985755	24	2.2	24	96	0	99	14	20	7	57	1.61
55992429--55992510	43	1.9	43	100	0	164	20	9	18	51	1.74
56006964--56007001	20	1.9	20	88	0	58	10	7	13	68	1.39
56008430--56008480	21	2.7	18	82	11	57	64	1	3	29	1.22
56010209--56010970	206	3.7	206	91	0	1168	28	21	18	31	1.97
56021169--56021302	57	2.4	57	97	0	250	29	22	8	39	1.84
56022663--56022703	18	2.3	19	79	12	50	48	0	2	48	1.14
56025454--56025478	13	1.9	13	100	0	50	24	8	0	68	1.16
56025554--56025588	16	2.2	16	89	0	52	22	8	2	65	1.34
56025752--56025795	3	14.7	3	80	0	52	29	6	2	61	1.34
56028503--56028546	19	2.2	20	96	4	81	43	34	9	13	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56029036--56029084	11	4.3	11	82	10	62	34	0	6	59	1.22
56030315--56030583	24	11.0	24	93	2	414	27	19	20	31	1.97
56030314--56030582	73	3.7	72	92	5	416	27	19	20	31	1.97
56030635--56030698	20	3.2	20	93	0	110	32	20	12	34	1.90
56030635--56030687	11	5.2	11	69	17	51	32	18	13	35	1.90
56030735--56030782	25	1.9	25	91	0	78	27	12	25	35	1.92
56033415--56033474	31	2.0	30	90	3	93	26	3	11	58	1.49
56034730--56035022	27	11.0	27	83	4	326	38	21	9	30	1.86
56034743--56035022	53	5.2	53	86	2	328	38	20	10	31	1.85
56034743--56035059	27	11.8	27	82	4	282	38	20	9	31	1.85
56035052--56035291	27	9.0	27	84	0	277	35	18	20	25	1.96
56035052--56035266	81	2.7	80	88	1	324	36	18	20	24	1.95
56035719--56035772	22	2.5	22	76	11	65	20	25	22	31	1.98
56035719--56035780	22	2.8	21	74	13	54	17	24	24	33	1.96
56035942--56036049	27	4.1	26	79	12	103	18	20	20	40	1.91
56036170--56036263	6	15.2	6	73	14	66	21	19	12	46	1.82
56036170--56036257	19	4.8	17	72	18	61	20	19	13	46	1.83
56036170--56036263	25	3.5	25	76	16	98	21	19	12	46	1.82
56037722--56037753	16	2.0	16	93	0	55	28	18	21	31	1.97
56037899--56038055	27	5.9	27	87	3	201	24	22	17	35	1.95
56037899--56038055	81	2.0	80	90	1	251	24	22	17	35	1.95
56038102--56038332	27	8.6	26	76	7	180	30	9	21	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56038112--56038332	54	4.1	53	77	2	201	31	9	20	38	1.84
56038111--56038332	80	2.8	80	81	3	259	31	9	20	38	1.85
56039623--56039740	52	2.3	51	86	1	164	34	13	22	29	1.92
56040130--56040239	45	2.4	46	89	4	170	37	17	22	22	1.94
56040130--56040379	46	5.5	43	83	7	153	42	15	23	19	1.89
56040221--56040379	46	3.5	45	90	3	237	45	13	23	16	1.83
56040505--56040547	13	3.3	13	76	0	50	34	2	25	37	1.69
56040505--56040599	26	3.6	26	75	13	79	38	4	21	35	1.73
56044232--56044329	28	3.5	28	94	2	162	33	26	12	27	1.92
56051914--56052012	28	3.5	28	94	2	164	33	26	12	28	1.92
56058609--56059208	44	13.4	43	73	9	345	31	17	21	30	1.96
56058609--56059208	89	6.7	89	74	8	427	31	17	21	30	1.96
56058612--56059079	133	3.5	133	87	2	604	31	17	21	29	1.96
56060503--56060564	31	2.0	31	100	0	124	41	32	9	16	1.80
56060671--56060763	40	2.4	38	72	3	87	33	35	12	18	1.89
56061752--56061794	20	2.0	22	86	8	63	53	11	32	2	1.50
56062311--56062340	14	2.1	15	93	6	53	13	10	13	63	1.52
56063091--56063120	15	2.0	15	93	0	51	70	6	23	0	1.11
56064757--56064959	3	68.3	3	72	13	136	29	7	1	61	1.33
56065094--56065127	15	2.3	15	89	0	50	35	11	0	52	1.38
56068940--56069116	50	3.5	50	85	2	239	35	15	20	27	1.94
56069094--56069201	31	3.5	31	89	0	171	29	19	26	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56069208--56069236	7	4.1	7	100	0	58	44	13	27	13	1.82
56069241--56069365	47	2.7	46	80	7	135	32	13	24	30	1.93
56077448--56077499	16	3.3	15	76	10	50	63	0	32	3	1.12
56077444--56077503	21	2.9	20	71	22	52	63	0	33	3	1.11
56078912--56078987	3	25.3	3	100	0	152	32	0	0	67	0.91
56084865--56084916	15	3.5	15	75	15	54	32	1	0	65	1.04
56085015--56085057	22	2.0	23	82	17	56	55	2	4	37	1.33
56085067--56085103	19	1.9	19	100	0	74	56	0	0	43	0.99
56086420--56086498	38	2.1	38	97	0	149	37	16	21	24	1.93
56090338--56090445	26	4.2	26	93	0	189	36	24	7	32	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250