genome.fa.s9.2.7.7.80.10.50.1000.198.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  198  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61865367--61865405	20	1.9	20	84	5	51	41	15	17	25	1.89
61868492--61868542	3	17.7	3	80	11	54	31	1	0	66	1.03
61868727--61868772	3	15.0	3	81	4	56	32	2	2	63	1.19
61868867--61868907	3	13.7	3	94	0	73	36	0	0	63	0.95
61868618--61869546	142	6.6	140	82	10	970	31	3	5	60	1.36
61869064--61869099	2	18.0	2	88	0	54	44	0	2	52	1.15
61869219--61869252	18	2.0	16	88	11	50	35	0	2	61	1.11
61869296--61869334	12	3.3	12	89	10	55	28	5	0	66	1.12
61869302--61869335	3	11.3	3	87	12	52	32	2	0	64	1.08
61869319--61869375	21	2.6	22	81	13	66	35	0	5	59	1.20
61868621--61869551	280	3.3	283	84	9	1170	30	3	5	60	1.35
61868652--61869612	295	3.4	273	79	14	856	30	4	5	60	1.37
61881684--61881809	64	2.0	64	84	6	166	23	19	24	33	1.97
61881810--61881976	77	2.2	78	91	1	273	26	17	19	36	1.94
61881917--61882040	64	1.9	64	86	0	176	21	21	24	32	1.98
61883705--61883781	18	4.2	18	75	16	70	29	0	1	68	0.97
61883697--61883762	3	22.7	3	84	9	84	30	0	0	69	0.88
61883750--61883805	27	2.2	25	81	12	60	33	1	3	60	1.24
61883768--61883819	22	2.3	23	81	15	65	32	3	3	59	1.33
61883739--61884657	136	6.7	135	77	14	599	31	3	4	60	1.35
61883768--61884021	120	2.1	120	92	4	426	30	4	2	62	1.28
61883998--61884046	3	16.0	3	78	4	53	34	2	2	61	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61883768--61884049	121	2.3	121	89	6	414	31	3	2	62	1.28
61884140--61884171	3	10.7	3	93	0	55	37	0	0	62	0.95
61884441--61884491	20	2.5	21	81	15	63	35	0	7	56	1.28
61884610--61884642	15	2.1	17	88	11	52	33	0	3	63	1.10
61885853--61885999	49	3.0	49	87	7	169	21	26	17	34	1.95
61885882--61885999	47	2.4	49	90	5	179	22	25	18	33	1.97
61892985--61893023	2	19.5	2	100	0	78	51	0	0	48	1.00
61895567--61895617	25	2.0	25	100	0	102	50	15	3	29	1.62
61899121--61899190	14	5.0	14	72	17	56	17	1	2	78	0.94
61899122--61899190	5	13.4	5	78	18	54	17	1	2	78	0.95
61899244--61899305	30	2.1	30	84	6	81	40	0	0	59	0.97
61899257--61899297	20	2.0	22	85	9	59	43	0	0	56	0.99
61899254--61899297	22	2.0	22	86	8	63	43	0	0	56	0.99
61899290--61899382	8	10.1	9	69	22	52	37	1	3	58	1.22
61903203--61903264	26	2.3	26	75	8	63	59	4	0	35	1.19
61905773--61905878	4	26.0	4	67	12	56	24	7	2	65	1.33
61906072--61906114	12	3.5	13	87	9	54	25	6	0	67	1.15
61909942--61910490	189	2.9	186	79	6	448	31	16	21	30	1.96
61910459--61910668	89	2.4	89	81	1	269	30	15	21	32	1.94
61910371--61910661	44	6.6	44	76	7	212	30	16	20	31	1.95
61910368--61910678	133	2.3	131	80	5	367	32	16	20	31	1.94
61912065--61912189	4	30.8	4	67	8	56	23	10	2	64	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61912973--61913492	220	2.4	215	80	6	553	37	15	21	25	1.93
61912954--61913491	146	3.7	145	79	4	551	37	15	21	25	1.92
61912954--61913457	38	13.7	37	72	9	311	37	15	21	25	1.93
61912954--61913465	73	7.0	72	80	7	449	37	15	21	25	1.93
61913363--61913473	37	3.0	36	72	13	102	39	12	18	28	1.88
61916638--61916671	11	3.0	11	91	4	50	61	0	38	0	0.96
61923496--61923590	37	2.6	36	85	9	113	49	32	0	17	1.47
61925590--61925861	47	5.7	47	89	2	384	33	9	29	27	1.88
61925980--61926058	37	2.1	37	90	0	122	24	18	31	25	1.98
61927849--61927909	30	2.0	30	100	0	122	37	29	13	19	1.90
61927879--61928455	141	4.2	131	85	7	706	32	26	16	24	1.96
61927916--61928495	273	2.1	274	85	3	788	32	25	16	25	1.96
61928048--61928515	141	3.3	141	89	1	665	31	25	16	25	1.96
61932334--61932389	18	3.5	15	81	18	60	37	10	16	35	1.83
61932332--61932403	19	3.9	19	89	10	123	37	11	15	36	1.83
61932332--61932403	35	2.0	37	91	8	121	37	11	15	36	1.83
61932395--61932438	21	2.0	22	86	4	63	36	4	13	45	1.64
61934539--61934688	43	3.5	43	86	1	185	30	14	24	30	1.95
61934573--61934733	85	1.9	85	83	3	207	28	15	26	29	1.96
61934572--61934733	43	3.8	43	85	0	182	29	15	25	29	1.96
61934539--61934737	43	4.7	43	82	3	170	29	15	24	30	1.96
61935572--61935600	14	2.1	14	93	6	51	58	6	0	34	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61936593--61936774	24	7.4	24	89	5	256	27	21	20	30	1.98
61936593--61936774	75	2.4	75	87	4	262	27	21	20	30	1.98
61936824--61936890	20	3.3	20	93	0	116	32	20	11	34	1.90
61936824--61936879	11	5.5	11	71	16	57	32	19	12	35	1.89
61937393--61937424	16	2.0	16	93	0	55	21	18	18	40	1.91
61943902--61944123	9	24.0	9	68	15	114	36	2	15	45	1.58
61943864--61944127	47	5.5	47	75	14	225	37	2	14	45	1.58
61943859--61944076	74	2.9	74	95	1	375	36	3	14	45	1.61
61943938--61944216	121	2.3	121	93	1	479	37	2	14	46	1.57
61944059--61944201	74	1.9	74	92	0	241	38	1	13	46	1.53
61944401--61944432	14	2.4	14	94	5	57	62	0	0	37	0.95
61944347--61944659	91	3.2	95	86	8	445	52	4	6	36	1.48
61946111--61946161	27	1.9	26	92	4	84	41	13	13	31	1.84
61947914--61947943	14	2.1	15	93	6	53	36	0	13	50	1.42
61949014--61949072	28	2.2	28	81	6	68	38	0	3	57	1.15
61949102--61949155	16	3.8	16	70	27	57	48	3	9	38	1.53
61949320--61949372	15	3.6	15	71	5	54	35	39	1	22	1.65
61949541--61949603	22	2.9	22	74	9	56	46	26	0	26	1.54
61949571--61949634	25	2.8	22	72	13	58	48	26	0	25	1.51
61949930--61950060	41	3.2	40	84	8	158	29	19	22	28	1.98
61951471--61951517	3	16.3	3	82	12	55	68	0	2	29	1.02
61951467--61951558	22	4.2	22	74	19	66	67	0	4	28	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61951474--61951559	15	5.9	15	73	21	51	66	0	5	27	1.15
61951519--61951553	15	2.4	15	90	4	54	68	0	5	25	1.11
61953094--61953890	143	5.6	143	87	0	1058	27	22	18	30	1.98
61953251--61953616	44	7.8	45	65	12	137	28	23	18	29	1.98
61960550--61960601	19	2.7	20	88	5	72	42	7	21	28	1.80
61963230--61963392	3	55.7	3	81	8	158	63	0	6	30	1.18
61963678--61963707	15	2.0	15	93	0	51	50	0	10	40	1.36
61965754--61965783	13	2.4	12	94	5	51	60	3	6	30	1.39
61965996--61966045	24	2.1	24	100	0	100	58	8	6	28	1.51
61968331--61968386	14	3.8	15	78	21	57	30	1	3	64	1.21
61968335--61968387	13	3.6	14	79	16	54	28	1	3	66	1.20
61968345--61968413	13	4.9	14	75	19	63	31	2	2	62	1.25
61975437--61975476	16	2.5	17	84	12	57	35	0	2	62	1.09
61975445--61975485	21	2.0	21	90	0	64	34	0	2	63	1.08
61975413--61975526	18	6.4	17	68	19	56	30	3	0	64	1.16
61975432--61975534	13	8.2	13	67	20	51	33	2	0	63	1.16
61975552--61975594	15	2.8	15	85	3	50	34	2	2	60	1.22
61975760--61975810	21	2.4	21	80	6	59	33	5	3	56	1.42
61975937--61975978	19	2.2	20	91	4	68	38	7	0	54	1.28
61981089--61981139	25	2.0	25	88	0	75	45	9	7	37	1.67
61981582--61981750	47	3.6	47	77	13	204	23	20	27	28	1.99
61981533--61981797	93	2.9	93	93	0	433	22	21	29	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61981538--61981804	46	5.8	46	73	15	219	22	20	28	28	1.99
61989154--61989183	15	2.0	15	93	0	51	50	0	10	40	1.36
61990130--61990159	12	2.5	12	88	0	51	16	6	6	70	1.31
61990581--61990620	20	2.0	20	90	9	64	15	0	10	75	1.05
61990886--61991708	133	6.2	133	91	1	1207	27	25	18	28	1.98
61991228--61991707	45	10.8	43	65	13	105	27	25	18	28	1.98
61999851--61999889	20	2.0	20	90	10	62	15	0	10	74	1.07
62003871--62003925	27	2.0	27	96	0	101	20	18	12	49	1.79
62005185--62005225	21	1.9	22	85	5	57	31	0	4	63	1.15
62016868--62017400	286	1.9	286	96	0	996	45	16	13	24	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250