genome.fa.s9.2.7.7.80.10.50.1000.214.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  214  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66364567--66364788	93	2.4	92	87	2	302	42	13	22	20	1.87
66369663--66369698	18	2.0	18	88	0	54	16	11	5	66	1.40
66369722--66369835	3	35.3	3	69	20	54	28	8	1	61	1.36
66369711--66369767	27	2.0	30	83	10	75	28	8	3	59	1.44
66369725--66369771	10	4.5	11	82	17	57	27	8	0	63	1.23
66369971--66370008	3	13.0	3	88	5	60	28	0	2	68	1.03
66378591--66378618	2	14.0	2	100	0	56	50	0	0	50	1.00
66383836--66383885	18	2.8	18	72	24	52	68	2	0	30	1.01
66386178--66386214	14	2.4	17	86	13	53	48	0	0	51	1.00
66386362--66386412	14	3.6	14	74	7	50	68	0	13	17	1.21
66386401--66386434	16	2.1	16	88	5	50	76	5	14	2	1.09
66402460--66402516	18	3.2	17	76	13	62	59	0	1	38	1.08
66402460--66402520	19	3.3	18	78	13	63	60	0	1	37	1.07
66402745--66402857	46	2.4	46	82	10	124	30	6	1	61	1.31
66402828--66402927	18	5.4	18	68	17	55	38	2	0	60	1.09
66402792--66402959	8	18.6	9	67	19	66	32	4	0	62	1.19
66404641--66404682	18	2.4	18	80	15	52	47	40	0	11	1.40
66404760--66404803	18	2.4	18	100	0	88	63	31	0	4	1.14
66405101--66405139	17	2.3	17	86	8	53	17	10	0	71	1.12
66405178--66405235	28	2.0	29	81	15	68	67	6	0	25	1.16
66406728--66406804	15	5.4	15	64	17	56	27	2	7	62	1.36
66406728--66406804	28	2.7	28	73	13	68	27	2	7	62	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66408271--66408326	28	2.0	28	96	0	103	44	0	12	42	1.42
66408647--66408702	25	2.2	26	80	9	69	23	19	19	37	1.94
66408658--66408754	25	4.2	25	79	13	91	20	21	17	40	1.92
66408691--66408756	22	3.1	21	87	8	98	18	24	16	40	1.90
66411795--66411832	19	2.1	19	90	5	60	52	7	2	36	1.45
66417596--66417628	17	1.9	17	88	11	50	69	6	0	24	1.10
66419251--66419287	5	7.4	5	88	11	58	18	0	0	81	0.70
66426198--66426552	175	2.0	174	93	2	615	40	20	17	21	1.92
66435742--66435775	16	2.1	16	89	10	52	64	0	0	35	0.94
66441560--66441621	28	2.3	27	85	2	88	33	4	0	61	1.17
66446986--66447037	27	1.9	27	84	0	68	55	1	0	42	1.10
66453004--66453032	14	2.1	14	100	0	58	51	6	13	27	1.66
66455952--66456028	39	2.0	40	81	16	94	38	1	7	51	1.39
66466026--66466066	21	1.9	22	85	5	57	75	0	0	24	0.80
66468108--66468146	20	2.0	20	85	5	53	43	0	2	53	1.14
66468720--66468797	31	2.5	31	83	8	88	53	10	5	30	1.56
66468742--66468806	31	2.1	32	82	2	78	47	12	6	33	1.66
66480726--66480775	22	2.3	21	83	10	57	10	56	18	16	1.67
66482755--66483010	132	1.9	131	85	6	349	28	18	18	34	1.95
66499652--66499692	15	2.9	14	85	7	55	65	12	4	17	1.42
66501904--66501935	15	2.1	15	100	0	64	37	0	0	62	0.95
66502454--66502569	10	12.3	9	66	20	51	37	3	0	57	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66502496--66502566	18	4.0	17	73	8	61	43	2	0	53	1.15
66502479--66502560	36	2.2	36	82	8	103	41	3	0	54	1.18
66502496--66502566	17	4.0	18	70	15	58	43	2	0	53	1.15
66506002--66506030	5	5.8	5	100	0	58	0	58	0	41	0.98
66510537--66510581	18	2.5	18	100	0	90	0	57	0	42	0.98
66515303--66515332	15	2.0	15	93	0	51	66	3	0	30	1.07
66517784--66517848	34	2.0	34	81	6	80	32	26	15	26	1.95
66518048--66518101	22	2.5	22	96	0	99	25	37	20	16	1.93
66519721--66519830	26	4.2	26	96	0	175	36	23	5	34	1.78
66521618--66521665	18	2.7	17	73	20	53	37	6	0	56	1.25
66521668--66521725	21	2.7	21	76	12	57	34	6	6	51	1.55
66521793--66521841	3	16.3	3	91	8	82	32	2	0	65	1.04
66521653--66521993	163	2.1	160	89	5	517	31	5	4	58	1.41
66521804--66522118	148	2.1	147	78	10	347	31	4	5	58	1.41
66522181--66522236	11	5.0	11	75	10	51	37	1	5	55	1.33
66522185--66522244	24	2.6	23	86	5	84	36	1	6	55	1.36
66522326--66522368	23	2.0	22	86	13	63	30	9	9	51	1.65
66522656--66522769	12	9.3	12	69	21	53	34	3	3	58	1.32
66522659--66522759	23	4.5	22	70	22	61	34	2	3	58	1.32
66522713--66522771	18	3.2	18	80	17	68	30	3	1	64	1.20
66526024--66526137	39	2.9	39	90	0	174	23	19	29	27	1.98
66526029--66526181	78	2.0	78	80	7	177	23	19	29	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66538266--66538838	76	7.3	75	82	10	639	30	16	19	33	1.94
66538623--66538651	14	2.1	14	100	0	58	13	13	6	65	1.45
66538491--66538807	80	3.9	82	80	11	357	27	17	20	35	1.95
66538656--66538838	80	2.3	77	87	5	217	28	15	21	33	1.95
66540370--66540397	3	9.3	3	100	0	56	35	0	0	64	0.94
66540536--66540591	19	2.7	21	81	13	64	33	5	7	53	1.51
66540368--66540847	144	3.3	144	83	8	546	30	5	4	59	1.41
66540801--66540848	3	15.7	3	95	4	87	35	0	0	64	0.94
66540840--66541024	24	7.3	27	68	25	81	32	1	7	58	1.35
66540917--66540998	25	3.3	23	77	12	83	35	1	4	58	1.27
66540977--66541011	16	2.2	16	94	0	61	34	0	0	65	0.93
66540917--66541091	85	2.0	87	81	8	207	33	3	5	57	1.37
66543928--66543989	12	5.3	12	72	14	58	40	1	3	54	1.26
66545810--66545979	94	1.8	93	92	2	288	28	28	20	22	1.98
66545802--66545976	47	3.7	47	81	12	216	29	29	19	22	1.98
66553355--66553529	47	3.7	47	81	12	225	29	29	20	21	1.98
66555078--66555124	24	2.0	24	84	16	62	31	2	14	51	1.55
66555095--66555148	21	2.6	21	75	13	58	37	0	12	50	1.41
66555282--66555389	37	2.7	40	83	9	132	26	16	23	33	1.96
66555560--66555607	24	2.0	24	84	8	62	35	6	18	39	1.76
66557234--66557477	126	1.9	126	94	0	434	37	15	18	29	1.91
66557932--66557962	14	2.2	14	94	0	53	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66557915--66557970	21	2.8	21	81	10	55	60	1	0	37	1.07
66557934--66557970	19	2.0	18	94	5	65	67	0	0	32	0.91
66558649--66558949	133	2.3	133	87	0	424	27	23	20	27	1.99
66560242--66560281	14	2.9	13	82	10	53	0	27	0	72	0.85
66560232--66560280	13	3.8	14	82	12	61	0	26	0	73	0.83
66560232--66560281	20	2.6	20	78	6	59	0	26	0	74	0.83
66560220--66560286	26	2.6	25	78	21	66	1	22	0	76	0.87
66560220--66560286	13	5.1	13	70	15	57	1	22	0	76	0.87
66562200--66562324	47	2.7	45	86	5	160	30	24	14	30	1.95
66562329--66562357	7	4.1	7	100	0	58	13	27	13	44	1.82
66562356--66562564	31	6.7	31	88	2	294	26	26	19	28	1.99
66562542--66562718	50	3.5	50	86	2	239	25	21	16	36	1.94
66566184--66566228	21	2.1	21	88	8	65	15	22	22	40	1.91
66570127--66570177	21	2.4	21	83	0	57	56	7	9	25	1.58
66570374--66570405	14	2.3	14	94	0	55	68	0	0	31	0.90
66574317--66574368	19	2.7	19	81	0	59	55	5	5	32	1.47
66576806--66576910	43	2.4	43	76	6	106	35	32	13	19	1.90
66578360--66578414	26	2.1	26	100	0	110	14	14	16	54	1.71
66578557--66578581	13	1.9	13	100	0	50	0	0	28	72	0.86
66590095--66590333	41	5.8	41	87	6	281	27	19	24	28	1.99
66593016--66593049	17	2.0	17	94	0	59	50	0	0	50	1.00
66594423--66594466	20	2.3	18	84	7	52	47	18	6	27	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66604346--66604373	6	4.7	6	100	0	56	17	14	50	17	1.79
66604639--66605175	120	4.5	120	98	0	1029	44	2	4	48	1.38
66604764--66604798	18	2.0	17	88	5	52	45	0	0	54	0.99
66605004--66605038	18	2.0	17	94	5	61	42	0	0	57	0.99
66605394--66605462	16	4.2	16	90	3	111	37	36	1	24	1.65
66605394--66605462	33	2.1	32	91	2	111	37	36	1	24	1.65
66613646--66613711	10	6.4	10	81	13	80	33	27	0	39	1.57
66613647--66613711	32	2.0	32	91	5	105	33	26	0	40	1.56
66613646--66613701	22	2.6	22	81	15	73	33	28	0	37	1.58
66613862--66613959	48	2.0	48	88	0	142	33	7	2	57	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250