genome.fa.s9.2.7.7.80.10.50.1000.207.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  207  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64539189--64539299	54	2.1	54	84	3	143	36	22	22	18	1.94
64542280--64542361	30	2.7	30	92	0	137	24	19	7	48	1.74
64545618--64545648	11	2.7	12	90	10	55	25	0	0	74	0.82
64550366--64550390	7	3.6	7	100	0	50	56	0	0	44	0.99
64552399--64552467	21	3.2	21	65	25	54	49	10	18	21	1.77
64552391--64552477	43	2.0	43	88	4	131	42	11	21	24	1.86
64552585--64552623	20	2.0	20	85	10	53	33	25	7	33	1.84
64557977--64558102	39	3.2	39	93	0	198	22	20	29	27	1.98
64557977--64558140	39	4.2	39	87	2	188	21	21	29	26	1.99
64557993--64558167	78	2.3	78	80	6	187	20	22	30	26	1.98
64557995--64558172	39	4.6	38	81	6	148	20	22	29	27	1.99
64560272--64560422	53	2.8	53	87	4	205	26	16	27	29	1.97
64561774--64561817	23	1.9	23	85	0	61	56	4	9	29	1.50
64561872--64561897	11	2.4	11	100	0	52	57	7	0	34	1.27
64561952--64562010	21	2.8	22	85	10	70	59	5	0	35	1.20
64561864--64562015	71	2.2	69	78	11	157	57	5	1	34	1.31
64561999--64562199	3	67.7	3	67	19	61	61	4	2	30	1.32
64568105--64568146	20	2.1	20	86	0	57	50	2	2	45	1.27
64570395--64570428	5	7.0	5	96	3	61	38	0	0	61	0.96
64570472--64570583	55	2.0	55	100	0	224	39	14	3	42	1.63
64571233--64571291	28	2.0	30	80	6	68	55	1	0	42	1.09
64571952--64572003	21	2.4	21	83	3	59	42	1	7	48	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64572541--64572578	17	2.2	17	90	0	58	47	0	0	52	1.00
64582388--64582420	3	11.0	3	100	0	66	33	0	0	66	0.92
64589138--64589180	22	2.0	22	86	8	63	27	9	2	60	1.40
64589445--64589552	45	2.5	44	82	8	132	27	6	7	58	1.50
64600914--64600964	15	3.5	15	67	5	50	29	0	9	60	1.28
64603005--64603058	29	1.9	27	85	7	72	42	18	16	22	1.89
64620517--64620561	24	1.9	23	86	4	63	51	11	8	28	1.68
64625849--64625898	11	4.7	11	82	9	68	30	32	0	38	1.58
64625841--64625898	20	2.7	21	84	10	73	31	29	0	39	1.57
64627042--64627068	7	3.9	7	100	0	54	25	0	14	59	1.36
64627686--64627728	18	2.4	18	92	0	68	16	27	11	44	1.82
64628134--64628312	58	3.1	58	69	20	174	39	3	8	48	1.51
64628112--64628374	116	2.3	116	95	1	474	39	4	7	47	1.52
64628161--64628341	54	3.2	53	70	19	150	43	2	6	47	1.44
64631407--64631930	126	4.2	126	89	1	800	27	21	17	33	1.96
64632013--64632042	15	2.0	15	93	0	51	46	36	0	16	1.47
64632017--64632222	96	2.1	97	81	9	251	41	16	1	39	1.58
64632212--64632253	16	2.6	17	85	11	61	54	26	0	19	1.44
64638885--64638933	25	1.9	26	91	4	82	26	6	26	40	1.79
64641031--64641072	18	2.3	18	88	8	59	45	0	0	54	0.99
64647508--64647548	18	2.2	18	91	4	64	68	0	4	26	1.10
64647517--64647587	18	3.8	18	74	20	65	63	0	7	29	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64647527--64647590	30	2.1	30	83	11	78	65	0	6	28	1.16
64647516--64647578	20	3.2	20	80	6	58	65	0	6	28	1.17
64647566--64647612	24	2.0	23	87	4	67	65	0	4	29	1.11
64648932--64649000	11	6.4	11	72	3	50	69	13	2	14	1.30
64651405--64651451	4	11.8	4	95	0	67	19	48	6	25	1.72
64653240--64653304	18	3.3	19	77	16	53	35	1	6	56	1.33
64653637--64654011	194	1.9	192	85	3	511	33	11	14	41	1.82
64654406--64654449	11	4.0	11	78	0	52	61	2	11	25	1.41
64659695--64659733	20	2.0	20	89	0	60	53	2	5	38	1.37
64659808--64659852	18	2.3	20	88	7	67	60	4	2	33	1.29
64663942--64663995	18	2.9	19	77	20	60	33	3	7	55	1.45
64666046--64666103	21	2.7	21	81	10	64	65	0	24	10	1.23
64666046--64666085	20	2.0	20	90	5	62	67	0	22	10	1.20
64667416--64667463	15	3.3	15	76	2	53	56	8	0	35	1.30
64668252--64668291	18	2.2	19	86	4	55	30	0	25	45	1.54
64679127--64679160	17	1.9	18	88	5	52	20	20	5	52	1.67
64685529--64685565	19	1.9	19	88	0	56	43	2	16	37	1.62
64686218--64686246	14	2.0	15	93	6	51	68	6	20	3	1.27
64687345--64687514	87	2.0	87	98	1	333	41	23	7	27	1.80
64690467--64690506	13	2.9	14	85	7	55	62	0	10	27	1.27
64691268--64691306	13	2.8	14	84	7	53	51	0	0	48	1.00
64691313--64691369	26	2.1	28	84	12	75	73	3	15	7	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64693443--64693531	23	4.0	22	81	7	110	21	19	22	37	1.95
64695844--64695892	10	4.9	10	84	0	71	67	0	8	24	1.18
64698300--64698327	14	2.0	14	100	0	56	35	14	21	28	1.92
64698501--64698549	23	2.1	23	100	0	98	38	24	4	32	1.74
64698668--64698706	18	2.2	18	90	0	60	64	0	2	33	1.08
64700981--64701131	81	1.9	80	84	5	207	37	3	11	47	1.58
64702151--64702182	12	2.7	12	95	0	55	34	40	0	25	1.56
64702151--64702182	15	2.1	15	94	0	55	34	40	0	25	1.56
64702757--64702790	2	17.0	2	100	0	68	0	50	0	50	1.00
64710708--64710850	70	2.0	70	98	0	277	29	21	12	36	1.90
64716590--64716659	6	11.7	6	70	11	54	72	1	4	21	1.09
64716593--64716659	12	5.5	12	77	10	64	71	1	4	22	1.12
64716608--64716657	23	2.2	23	89	7	75	74	2	2	22	1.03
64717389--64717428	21	1.9	21	100	0	80	62	2	10	25	1.39
64720615--64720693	30	2.6	30	85	0	95	31	34	25	8	1.87
64720624--64720700	30	2.6	30	87	0	100	29	33	24	11	1.91
64727090--64727226	55	2.5	55	80	3	141	18	25	29	27	1.98
64734233--64734261	12	2.4	12	100	0	58	37	6	10	44	1.65
64734447--64734480	15	2.3	15	100	0	68	32	14	17	35	1.91
64735934--64735959	3	8.7	3	100	0	52	65	0	34	0	0.93
64742996--64743020	3	8.3	3	100	0	50	64	0	36	0	0.94
64753691--64754268	204	2.8	204	87	2	872	29	21	17	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64766328--64766383	14	3.9	14	73	13	51	55	1	5	37	1.33
64769032--64769090	29	2.0	29	100	0	118	23	33	0	42	1.55
64770528--64770595	31	2.3	29	90	9	104	44	14	4	36	1.66
64770537--64770595	31	1.9	31	100	0	118	44	13	5	37	1.66
64778362--64779087	361	2.0	362	93	1	1231	38	15	13	32	1.87
64789821--64789867	23	2.0	23	84	8	60	40	2	0	57	1.11
64793299--64793325	6	4.5	6	100	0	54	29	0	70	0	0.88
64795880--64796507	326	1.9	326	81	3	755	34	18	11	35	1.87
64802360--64802637	92	3.0	92	90	1	416	46	15	12	25	1.81
64804925--64804975	13	3.9	13	77	10	59	41	1	15	41	1.58
64805266--64805312	10	4.7	10	79	10	60	29	0	2	68	1.02
64823031--64823062	6	5.3	6	100	0	64	84	0	15	0	0.63
64825858--64825882	11	2.3	11	100	0	50	8	28	36	28	1.85
64836599--64836638	20	2.1	19	85	4	53	42	2	5	50	1.37
64836748--64836907	76	2.1	76	90	3	250	43	1	8	46	1.44
64847871--64847911	16	2.6	15	85	11	55	43	0	9	46	1.36
64850901--64851048	41	3.4	40	77	17	127	30	20	23	25	1.99
64850940--64851037	49	2.0	49	91	0	160	32	19	23	24	1.97
64850991--64851090	41	2.4	41	81	3	112	27	19	26	28	1.98
64851645--64851731	7	12.6	7	78	7	61	49	27	0	22	1.50
64851631--64851677	21	2.2	21	80	0	58	51	25	0	23	1.49
64851736--64851836	41	2.5	41	85	3	123	38	16	26	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64851866--64851934	22	3.2	22	76	15	72	24	1	20	53	1.54
64854784--64854863	28	2.8	29	83	7	101	15	2	33	48	1.58
64855049--64855093	22	2.0	23	91	4	74	20	17	20	42	1.90
64859638--64859680	14	3.0	14	76	6	50	23	0	37	39	1.55
64859905--64859947	22	1.9	23	85	4	61	23	4	39	32	1.75
64860872--64860919	18	2.6	18	83	3	51	27	35	0	37	1.57
64860884--64860919	18	2.0	18	88	0	54	30	36	0	33	1.58
64864009--64864033	13	1.9	13	100	0	50	52	0	8	40	1.31
64864047--64864127	34	2.3	35	89	4	119	48	16	1	34	1.54
64864086--64864237	43	3.5	43	77	10	173	49	16	1	32	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250