genome.fa.s9.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  97  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31470974--31471327	40	8.8	40	85	3	246	36	18	22	22	1.95
31471011--31471327	81	3.9	81	86	1	420	35	18	23	21	1.95
31471011--31471327	40	7.8	41	87	1	399	35	18	23	21	1.95
31471329--31471458	46	2.7	47	84	5	163	48	33	1	16	1.56
31472031--31472068	19	2.0	20	94	5	69	65	2	5	26	1.27
31472062--31472102	16	2.9	14	89	10	57	75	0	2	21	0.92
31472055--31472088	6	5.3	6	89	10	50	76	0	0	23	0.79
31472580--31472637	23	2.5	22	86	2	71	68	3	1	25	1.14
31472573--31472635	7	8.4	7	86	8	63	69	3	3	23	1.17
31472573--31472635	15	4.1	15	82	8	65	69	3	3	23	1.17
31472587--31472635	16	3.1	16	85	5	64	73	4	0	22	1.00
31472762--31472901	41	3.4	40	76	6	113	44	11	18	25	1.83
31472793--31472901	41	2.7	41	82	1	130	39	12	20	27	1.89
31479022--31479078	19	3.0	20	76	7	55	22	1	3	71	1.10
31479176--31479212	17	2.2	17	90	0	56	29	0	0	70	0.88
31479216--31479347	43	3.0	43	84	3	176	22	16	31	28	1.96
31483545--31483671	9	14.1	9	69	17	68	33	2	18	44	1.63
31483563--31483660	38	2.4	40	83	11	128	34	2	17	45	1.60
31484966--31485031	31	2.2	30	84	10	82	39	1	3	56	1.24
31485276--31485792	257	2.0	258	95	0	928	34	13	12	38	1.84
31486175--31486218	18	2.4	18	85	7	54	36	0	40	22	1.54
31487351--31487406	14	4.1	14	79	4	69	44	30	1	23	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31487354--31487406	27	2.0	27	92	0	88	47	28	1	22	1.62
31487404--31487466	7	9.3	7	82	6	58	31	46	0	22	1.52
31487356--31487421	21	3.2	20	72	10	53	42	31	1	24	1.64
31487410--31487459	7	7.4	7	84	8	68	30	50	0	20	1.49
31487410--31487459	13	3.7	14	84	7	68	30	50	0	20	1.49
31487410--31487455	20	2.3	20	96	0	83	28	52	0	19	1.47
31487404--31487471	27	2.5	27	85	7	84	30	48	0	20	1.50
31487478--31487588	7	15.6	7	67	10	55	47	26	2	23	1.65
31487472--31487501	14	2.1	15	93	6	53	56	20	0	23	1.42
31487483--31487587	22	4.9	20	73	10	68	46	26	2	23	1.66
31487870--31487954	40	2.1	40	86	0	116	29	24	20	25	1.99
31487843--31488260	151	2.7	153	78	8	429	27	21	22	29	1.99
31488154--31488322	40	4.2	39	82	4	149	26	20	23	29	1.99
31488154--31488322	80	2.1	80	81	4	189	26	20	23	29	1.99
31496116--31496162	21	2.2	22	85	11	62	57	14	4	23	1.55
31496126--31496193	31	2.2	32	94	5	129	60	16	2	20	1.48
31496124--31496168	21	2.0	22	83	8	56	60	15	4	20	1.52
31497296--31497434	47	3.0	47	89	2	208	37	21	11	29	1.89
31498476--31498507	13	2.3	15	89	10	50	68	0	25	6	1.12
31500014--31500050	16	2.3	16	86	13	58	40	0	0	59	0.97
31501111--31501170	24	2.5	24	88	0	93	53	5	13	28	1.60
31533294--31533341	23	2.1	22	84	3	60	52	4	0	43	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31535792--31535816	12	2.1	12	100	0	50	44	0	16	40	1.47
31540462--31540519	21	2.8	21	84	7	66	17	8	15	58	1.61
31540406--31540588	102	1.8	101	85	3	260	24	8	18	49	1.74
31561173--31561212	18	2.4	16	87	8	53	37	12	7	42	1.71
31561849--31561894	24	2.0	24	91	8	78	34	17	28	19	1.94
31565908--31566081	27	6.4	27	83	4	197	27	14	27	29	1.96
31565909--31566064	82	1.9	81	88	3	233	26	15	28	29	1.96
31576242--31576417	46	3.8	46	75	16	184	22	19	27	30	1.98
31576238--31576408	93	1.8	93	91	2	281	22	19	28	29	1.98
31579345--31579413	15	4.6	15	83	0	84	11	17	13	57	1.64
31579336--31579423	30	3.0	30	81	8	99	10	17	15	56	1.66
31581800--31581975	46	3.8	45	79	10	203	21	20	29	28	1.98
31581796--31581967	93	1.8	93	93	0	299	20	20	30	27	1.98
31584282--31584501	40	5.6	40	83	4	259	25	26	23	24	2.00
31588394--31588538	40	3.6	40	85	4	193	25	24	26	23	2.00
31595908--31596052	40	3.6	40	85	4	184	25	24	26	24	2.00
31598025--31598070	22	2.1	22	87	0	65	47	10	4	36	1.58
31603496--31603624	46	2.8	46	87	1	177	22	23	23	31	1.99
31614746--31614784	18	2.2	18	86	9	53	38	10	10	41	1.73
31617895--31617940	19	2.4	20	75	7	51	45	0	4	50	1.21
31618427--31618475	17	3.1	17	71	11	50	44	0	0	55	0.99
31618648--31618682	18	1.9	18	88	0	52	45	5	2	45	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31622676--31622912	39	6.1	39	92	0	402	21	25	29	23	1.99
31626214--31626331	44	2.8	42	78	10	130	32	27	16	22	1.96
31626340--31626499	79	2.0	80	95	1	286	22	21	17	38	1.93
31631327--31631497	40	4.4	40	88	5	260	32	29	16	21	1.96
31635388--31635611	39	5.7	40	82	2	168	21	24	26	27	1.99
31635386--31635579	39	4.9	39	81	3	183	21	24	27	26	1.99
31635417--31635599	78	2.3	79	79	3	199	21	22	27	28	1.99
31641704--31641838	43	3.1	42	78	9	114	30	25	18	25	1.98
31641699--31641868	86	2.0	85	80	5	191	31	25	18	24	1.97
31645476--31645514	18	2.2	18	100	0	78	33	25	12	28	1.93
31646000--31646099	51	2.0	51	84	7	132	37	24	15	24	1.93
31646061--31646144	43	2.0	43	87	0	123	28	29	17	23	1.97
31646902--31646936	16	2.2	16	100	0	70	65	11	5	17	1.43
31651726--31651910	40	4.7	40	80	6	207	25	27	22	25	2.00
31680073--31680151	39	2.1	38	88	7	115	32	34	15	17	1.91
31680419--31680748	54	6.1	54	88	0	417	25	16	18	39	1.92
31680446--31680802	54	6.6	54	86	2	389	25	14	19	40	1.90
31680446--31680775	27	12.2	27	84	3	333	26	15	18	39	1.91
31680679--31680804	27	4.7	26	82	9	105	26	10	20	42	1.84
31680446--31680775	81	4.1	81	83	3	414	26	15	18	39	1.91
31680733--31680819	27	3.3	27	76	10	81	27	5	22	43	1.76
31682650--31682710	21	2.9	21	78	9	63	16	39	26	18	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31685129--31685288	40	4.0	40	86	4	189	22	21	25	30	1.99
31688664--31688732	24	2.8	25	77	6	86	28	20	17	33	1.95
31696947--31696984	19	2.0	19	100	0	76	52	26	5	15	1.64
31699213--31699344	48	2.8	48	87	2	185	30	17	26	25	1.97
31699400--31699566	90	1.9	90	82	2	210	26	17	27	27	1.98
31716103--31716202	42	2.3	43	81	6	114	31	24	18	27	1.97
31722968--31723046	32	2.5	32	91	0	113	27	29	10	32	1.89
31734134--31734355	40	5.6	40	94	1	349	25	22	27	25	2.00
31746233--31746465	39	5.6	40	80	13	193	25	21	28	24	1.99
31746287--31746315	14	2.1	14	100	0	58	20	17	34	27	1.95
31746248--31746353	52	2.0	53	90	5	171	23	19	29	27	1.98
31746301--31746472	40	4.4	40	89	4	253	25	20	29	24	1.99
31746301--31746472	79	2.2	78	87	6	249	25	20	29	24	1.99
31748445--31748836	40	9.8	40	94	0	649	23	21	29	26	1.99
31752864--31753220	47	7.6	47	95	1	608	33	8	29	29	1.86
31757047--31757125	37	2.1	37	90	0	122	25	31	18	24	1.98
31757244--31757929	47	14.4	47	90	5	986	29	29	8	32	1.87
31757244--31757929	92	7.2	94	89	6	995	29	29	8	32	1.87
31757297--31757929	145	4.4	140	90	6	1002	30	28	8	32	1.87
31760539--31760847	40	7.7	40	85	2	336	24	27	23	24	2.00
31761155--31761233	29	2.7	29	86	5	106	27	32	15	24	1.95
31763118--31763196	37	2.1	37	90	0	122	25	31	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31763315--31763996	47	14.4	47	91	3	978	29	29	9	32	1.88
31763367--31763996	140	4.4	140	92	4	1003	29	28	8	32	1.87
31766763--31766816	18	2.9	18	75	5	54	59	3	5	31	1.38
31767650--31767768	29	4.2	29	79	6	136	26	28	14	31	1.95
31767652--31767764	58	2.0	57	87	1	163	24	29	15	30	1.95
31767846--31767882	19	1.9	19	88	0	56	16	37	18	27	1.92
31767980--31768030	24	2.1	24	85	7	68	11	23	15	49	1.78
31770171--31770281	29	3.9	29	79	9	111	25	16	31	27	1.96
31775504--31775587	42	2.0	42	95	0	150	34	34	3	27	1.74
31776821--31776860	21	2.0	20	85	5	53	27	0	25	47	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250