genome.fa.s9.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  119  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38355626--38355808	40	4.6	40	81	7	187	24	20	27	28	1.99
38355626--38355805	80	2.3	81	83	10	212	23	20	27	27	1.99
38368979--38369036	25	2.3	25	93	0	98	27	12	22	37	1.89
38369033--38369112	26	3.1	25	78	19	85	31	20	23	25	1.98
38369997--38370031	16	2.1	18	89	10	56	40	11	2	45	1.55
38382931--38382988	25	2.3	25	93	0	98	27	12	22	37	1.89
38382955--38383072	50	2.4	49	80	4	128	30	16	22	30	1.96
38382985--38383062	25	3.1	24	82	14	95	30	20	23	25	1.98
38391965--38392075	50	2.2	50	86	0	150	36	18	19	25	1.95
38392005--38392078	25	3.0	24	72	5	67	39	18	20	21	1.93
38399537--38399624	29	3.0	29	89	0	131	28	32	13	25	1.94
38399936--38399982	24	2.0	24	95	0	85	40	31	10	17	1.83
38404020--38404089	29	2.4	29	88	2	115	30	31	10	28	1.89
38404020--38404106	29	3.0	29	81	8	106	31	31	10	27	1.90
38404183--38404219	19	2.0	18	89	5	56	18	40	16	24	1.90
38404192--38404228	19	1.9	19	88	0	56	16	37	18	27	1.92
38412005--38412059	25	2.2	26	83	3	67	3	29	0	67	1.08
38414585--38414615	16	1.9	16	93	0	53	9	6	32	51	1.60
38419355--38419585	48	4.9	48	78	10	226	26	19	24	29	1.99
38421953--38422179	54	4.2	53	78	8	145	29	21	11	38	1.87
38421976--38422169	27	7.2	27	84	2	237	27	22	10	39	1.87
38422174--38422368	27	7.2	27	83	4	232	35	17	20	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38422182--38422367	81	2.3	81	88	0	264	35	17	20	26	1.95
38422568--38422646	27	3.0	26	88	3	95	20	22	21	35	1.96
38422738--38422795	22	2.6	22	83	0	62	18	25	20	34	1.96
38422969--38423034	27	2.5	27	82	7	73	16	21	22	39	1.92
38423177--38423326	6	24.8	6	78	14	148	22	17	11	48	1.79
38423156--38423229	30	2.4	31	90	2	114	21	17	13	47	1.82
38423156--38423315	73	2.2	73	92	2	259	22	17	12	47	1.81
38426809--38426847	13	3.1	12	82	10	51	71	0	0	28	0.86
38427721--38427777	30	1.9	30	82	7	71	40	12	8	38	1.74
38430650--38430825	50	3.5	51	83	3	180	30	26	17	26	1.97
38431205--38431502	43	7.0	42	80	5	298	30	24	19	25	1.98
38431205--38431502	85	3.5	85	83	5	343	30	24	19	25	1.98
38432403--38432440	19	2.1	18	85	9	51	52	0	7	39	1.31
38438259--38438286	12	2.3	12	100	0	56	10	46	10	32	1.73
38441431--38441461	7	4.4	7	100	0	62	61	0	0	38	0.96
38442687--38442733	23	2.0	23	95	0	85	48	10	19	21	1.78
38445667--38445714	25	1.9	25	100	0	96	39	25	6	29	1.80
38447290--38447514	40	5.7	40	84	5	269	25	28	21	24	1.99
38447292--38447514	119	1.9	120	84	6	301	25	28	21	24	1.99
38449261--38449440	41	4.4	41	92	1	290	17	21	26	33	1.96
38449494--38449519	12	2.2	12	100	0	52	46	30	15	7	1.74
38454491--38454932	51	8.8	50	81	1	472	29	24	19	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38454491--38454932	101	4.4	101	85	1	627	29	24	19	26	1.98
38458584--38458648	28	2.3	28	84	5	78	33	32	6	27	1.82
38458754--38458843	27	3.2	28	79	7	103	18	23	24	33	1.97
38458764--38458854	27	3.2	28	79	4	85	20	25	20	32	1.97
38461955--38462007	27	1.9	28	88	3	81	37	18	13	30	1.89
38462556--38462586	13	2.4	13	100	0	62	22	0	19	58	1.40
38474884--38475019	40	3.4	40	81	7	143	33	28	16	21	1.95
38476320--38476422	40	2.6	40	78	3	100	23	19	18	38	1.93
38484893--38484936	20	2.2	20	91	0	70	13	34	34	18	1.90
38485207--38485298	42	2.2	42	98	0	175	25	31	20	22	1.98
38486853--38486911	26	2.2	26	84	3	73	32	22	11	33	1.90
38486866--38486916	26	2.0	26	96	0	93	23	21	13	41	1.89
38486864--38486966	27	3.9	27	85	1	127	28	22	9	39	1.85
38486819--38487003	27	6.9	27	78	4	88	35	22	7	35	1.81
38486958--38487050	27	3.5	27	80	4	109	44	18	7	30	1.77
38487578--38487752	26	6.8	26	91	0	273	26	22	22	28	1.99
38487578--38487752	52	3.4	52	96	1	309	26	22	22	28	1.99
38487897--38487988	42	2.2	42	92	0	148	29	14	21	34	1.93
38489232--38489322	41	2.2	42	86	2	121	34	27	14	24	1.94
38489273--38489367	48	2.0	48	89	0	145	29	27	18	24	1.98
38496689--38496953	48	5.6	48	69	16	185	28	26	19	25	1.99
38503745--38503826	40	2.0	41	86	11	114	34	8	3	53	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38511248--38511306	29	2.0	30	83	3	75	15	3	38	42	1.63
38513039--38513196	43	3.7	42	80	5	158	30	26	20	22	1.98
38517660--38517757	48	2.0	48	92	0	160	34	6	28	30	1.82
38519246--38519360	40	2.9	40	90	3	180	26	22	24	26	2.00
38519400--38519528	29	4.5	28	78	8	109	20	17	31	31	1.96
38519368--38519535	57	2.9	57	87	0	228	22	17	29	30	1.96
38519378--38519528	28	5.3	27	76	9	131	21	17	29	31	1.96
38523014--38523159	48	3.0	48	95	0	256	34	6	28	30	1.82
38528504--38528636	45	3.0	45	92	0	203	27	26	23	23	2.00
38535321--38535491	45	3.9	45	89	3	233	24	28	23	23	2.00
38537081--38537169	27	3.2	26	85	7	106	33	23	22	20	1.97
38539550--38539725	46	3.8	46	75	4	165	22	19	28	29	1.98
38539546--38539718	93	1.9	93	88	0	265	22	19	29	28	1.98
38542327--38542753	228	1.9	228	98	0	836	35	25	4	34	1.78
38546615--38546837	119	1.9	120	84	6	301	25	27	22	24	2.00
38546613--38546837	40	5.7	40	85	6	287	25	28	22	24	2.00
38549480--38549594	55	2.1	55	96	0	212	46	12	6	35	1.66
38549809--38549838	8	3.6	8	95	4	51	60	26	0	13	1.34
38551898--38552144	40	6.2	40	83	5	313	23	21	27	27	1.99
38551898--38552144	79	3.1	80	93	1	408	23	21	27	27	1.99
38558719--38558783	28	2.3	29	78	5	71	46	1	21	30	1.61
38561148--38561172	13	1.9	13	100	0	50	28	24	24	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38562966--38563016	14	3.9	14	76	19	56	19	0	17	62	1.32
38568616--38568665	23	2.2	23	88	0	73	16	14	24	46	1.83
38570889--38570922	10	3.3	10	84	8	50	29	8	8	52	1.62
38574993--38575042	23	2.2	23	96	0	91	14	16	26	44	1.85
38582500--38582610	27	4.1	26	80	7	123	16	21	23	38	1.92
38582500--38582610	54	2.1	54	86	3	152	16	21	23	38	1.92
38585637--38585661	11	2.3	11	100	0	50	60	0	0	40	0.97
38587578--38587677	52	1.9	51	89	0	146	30	30	8	32	1.86
38587647--38587773	48	2.7	47	87	2	182	25	28	11	33	1.91
38587647--38587794	47	3.1	47	85	1	188	27	29	10	33	1.89
38591997--38592588	40	14.8	40	94	0	977	26	28	21	24	1.99
38592108--38592174	23	3.2	23	60	24	56	26	28	20	23	1.99
38592348--38592414	23	3.2	23	60	24	56	23	26	23	25	2.00
38594134--38594280	47	3.1	47	87	0	195	27	28	10	33	1.90
38600192--38600288	19	5.2	19	73	2	79	39	15	12	32	1.85
38600396--38600447	22	2.4	22	86	0	68	28	15	11	44	1.81
38608387--38608440	28	2.0	27	85	3	72	27	11	5	55	1.57
38610723--38610764	11	3.6	11	81	12	57	35	0	4	59	1.19
38611996--38612032	14	2.8	13	88	11	58	62	10	5	21	1.48
38616637--38616817	39	4.6	39	85	0	236	30	27	19	21	1.98
38616633--38616817	78	2.4	78	87	3	266	31	27	20	21	1.98
38624257--38624294	19	2.0	20	85	15	53	39	23	0	36	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38624524--38624693	93	1.8	92	89	1	268	30	28	19	22	1.98
38624519--38624690	46	3.7	46	75	11	172	30	27	19	22	1.98
38629685--38629728	23	1.9	23	85	0	61	36	6	11	45	1.67
38636455--38636479	13	1.9	13	100	0	50	24	24	24	28	2.00
38645432--38645602	46	3.8	45	80	12	197	29	28	20	22	1.98
38645437--38645605	91	1.8	93	92	2	288	28	28	20	21	1.98
38652958--38653083	46	2.7	46	91	0	198	30	26	21	22	1.99
38652960--38653102	46	3.1	45	83	6	146	29	27	20	22	1.99
38662430--38662593	42	3.9	42	86	7	224	29	14	24	31	1.95
38662430--38662593	85	1.9	84	85	6	224	29	14	24	31	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250