genome.fa.s9.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  96  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31198033--31198074	22	1.9	22	95	0	75	45	23	19	11	1.83
31198493--31198574	41	2.0	41	97	0	155	24	28	24	23	2.00
31198821--31199017	54	3.7	53	74	9	177	30	7	19	42	1.79
31198842--31198993	27	5.7	27	77	7	132	27	5	21	46	1.72
31198812--31199009	27	7.4	27	74	3	130	29	7	21	40	1.81
31198832--31199017	80	2.3	81	80	3	207	30	7	19	41	1.79
31203152--31203211	30	2.0	30	90	0	93	38	8	25	28	1.84
31210673--31210732	30	2.0	31	90	3	95	36	8	25	30	1.85
31215304--31215478	46	3.8	45	79	11	203	21	20	29	28	1.98
31215300--31215470	92	1.8	93	93	1	299	21	21	30	27	1.98
31218376--31218438	15	4.4	15	81	15	80	11	14	12	61	1.56
31222685--31222709	5	5.0	5	100	0	50	0	40	60	0	0.97
31222862--31222902	16	2.6	16	92	0	64	48	2	2	46	1.28
31224431--31224468	18	2.0	20	90	10	62	5	39	2	52	1.38
31226013--31226101	28	3.2	28	85	4	119	34	23	21	20	1.96
31226210--31226288	26	3.1	25	83	5	88	43	21	16	18	1.88
31226411--31226953	27	20.3	27	75	12	326	18	19	19	41	1.90
31226409--31226953	80	6.8	80	76	10	416	18	19	20	41	1.90
31226409--31226953	107	5.1	107	77	9	436	18	19	20	41	1.90
31227824--31227943	56	2.1	56	96	0	222	45	10	23	21	1.82
31229075--31229292	40	5.6	40	83	7	252	25	21	28	24	1.99
31229075--31229292	79	2.8	79	80	9	241	25	21	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31229109--31229325	79	2.8	77	82	6	233	27	20	27	24	1.99
31234099--31234166	16	4.2	16	77	3	75	41	4	27	26	1.75
31234099--31234166	32	2.1	32	86	0	91	41	4	27	26	1.75
31234144--31234235	46	2.0	44	83	8	114	31	3	26	39	1.72
31239939--31240210	47	5.7	46	73	8	156	26	18	30	25	1.98
31242513--31242639	56	2.3	55	87	5	175	28	17	21	33	1.96
31257135--31257183	25	2.0	25	84	8	64	34	8	20	36	1.82
31261269--31261420	37	4.1	37	92	0	232	26	32	19	21	1.97
31261583--31261862	47	6.0	47	89	1	402	27	29	11	31	1.92
31261583--31261862	141	2.0	140	92	2	472	27	29	11	31	1.92
31261601--31261892	141	2.1	137	85	7	387	30	27	10	32	1.90
31268495--31268546	21	2.5	21	75	6	52	17	25	32	25	1.97
31273000--31273089	29	3.1	28	84	4	117	31	26	13	28	1.94
31286905--31286931	4	6.8	4	100	0	54	48	0	0	51	1.00
31290307--31290410	31	3.4	29	80	10	100	51	6	0	41	1.28
31296766--31296800	12	3.0	12	87	8	54	40	0	0	60	0.97
31296780--31297001	121	1.8	123	93	1	385	36	5	9	48	1.61
31298733--31298984	87	2.9	86	91	3	407	23	20	30	25	1.98
31298733--31298984	43	5.8	43	94	1	398	23	20	30	25	1.98
31299059--31299139	31	2.5	31	82	4	90	62	18	2	16	1.43
31299385--31299430	21	2.2	21	84	0	56	2	50	19	28	1.60
31305484--31305562	37	2.1	37	90	0	122	25	31	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31305680--31305899	47	4.7	47	97	1	406	29	30	9	30	1.88
31305680--31305899	93	2.3	94	97	1	415	29	30	9	30	1.88
31309418--31309834	40	10.4	40	83	5	429	25	28	21	24	1.99
31310601--31310679	37	2.1	37	90	0	122	25	31	18	24	1.98
31310796--31311065	47	5.7	47	97	2	472	29	30	8	31	1.88
31314407--31314624	27	7.9	27	80	8	204	37	1	13	47	1.51
31314330--31314551	114	1.9	114	85	3	304	38	0	12	48	1.47
31314354--31314599	18	13.4	18	78	8	192	38	0	12	47	1.47
31314354--31314612	9	28.2	9	75	8	173	37	1	13	48	1.50
31314729--31314784	15	3.8	15	76	21	64	51	0	1	46	1.11
31318763--31318971	39	5.3	39	81	8	246	26	28	21	23	1.99
31318763--31318971	79	2.7	80	90	3	327	26	28	21	23	1.99
31328336--31328563	39	5.8	40	85	6	315	26	29	20	24	1.99
31328336--31328563	79	2.9	80	90	5	358	26	29	20	24	1.99
31332142--31332192	12	4.3	11	79	16	57	39	1	0	58	1.09
31332181--31332212	15	2.1	15	94	0	55	31	9	0	59	1.29
31333223--31333523	41	7.4	41	90	3	421	17	23	24	34	1.96
31333832--31333886	22	2.5	22	79	2	58	69	1	1	27	1.09
31336330--31336407	39	2.0	39	94	0	138	43	2	23	30	1.67
31338812--31338886	35	2.1	35	85	0	96	30	22	21	25	1.99
31339296--31339370	28	2.7	28	89	0	114	30	21	18	29	1.97
31339292--31339397	28	3.7	27	80	10	97	32	19	20	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31351153--31351210	27	2.1	27	87	3	80	41	6	5	46	1.53
31352817--31353119	168	1.8	168	88	1	464	42	4	6	45	1.50
31354549--31354628	42	1.9	42	86	0	115	28	26	11	33	1.91
31357186--31357254	34	2.0	34	91	5	113	36	21	8	33	1.84
31357202--31357254	16	3.2	16	70	19	54	33	20	9	35	1.85
31357440--31357540	11	8.9	11	68	8	51	69	0	6	22	1.19
31357441--31357506	24	2.9	23	76	8	64	69	1	4	24	1.15
31357492--31357551	28	2.1	29	81	3	68	65	5	8	21	1.40
31358420--31358458	21	1.9	20	89	5	60	35	0	17	46	1.49
31361693--31361912	40	5.6	40	80	5	232	25	23	26	25	2.00
31369764--31369947	40	4.6	40	84	8	232	25	23	27	24	2.00
31394025--31394232	42	5.0	42	88	1	292	21	17	30	30	1.96
31394023--31394232	83	2.5	84	87	0	296	20	17	30	31	1.96
31394298--31394361	32	2.0	32	90	0	101	37	7	26	28	1.84
31396371--31396493	37	3.4	37	79	5	151	28	17	26	27	1.97
31396481--31396678	42	4.7	42	75	6	170	26	17	27	28	1.97
31400794--31401002	42	5.0	42	91	0	319	20	18	31	30	1.96
31401068--31401134	32	2.1	32	88	0	98	35	5	26	31	1.81
31403862--31403891	12	2.5	12	94	0	51	6	23	40	30	1.80
31405666--31405706	20	2.0	20	86	13	57	48	21	0	29	1.50
31408632--31408689	21	2.7	21	77	17	57	36	18	13	31	1.90
31409446--31409480	18	2.0	18	88	5	54	14	40	25	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31416815--31416845	9	3.3	9	95	4	53	41	0	0	58	0.98
31418612--31418730	46	2.6	46	86	0	157	23	19	26	30	1.98
31418654--31418824	93	1.8	92	83	5	227	23	22	25	28	1.99
31422871--31423051	40	4.6	40	82	6	199	24	27	22	25	2.00
31422871--31423051	79	2.3	80	80	7	199	24	27	22	25	2.00
31427077--31427200	46	2.7	46	85	5	153	22	18	27	31	1.97
31430445--31430532	45	2.0	45	90	4	142	38	23	11	26	1.89
31433936--31433974	3	13.0	3	100	0	78	33	0	0	66	0.92
31435542--31435574	8	4.1	8	100	0	66	51	24	24	0	1.48
31436184--31436231	20	2.5	20	78	18	57	29	18	25	27	1.98
31436222--31436358	60	2.3	59	85	8	170	29	20	24	26	1.99
31436258--31436370	28	3.9	28	71	21	99	28	19	25	26	1.99
31441699--31441821	45	2.7	45	91	0	192	39	21	13	25	1.89
31457737--31457808	31	2.3	30	81	6	90	27	23	15	33	1.95
31457832--31457923	42	2.2	42	92	0	148	34	21	14	29	1.93
31458918--31459004	27	3.2	27	91	3	131	18	26	20	34	1.96
31459057--31459340	27	10.4	27	77	4	131	35	9	18	36	1.84
31459150--31459286	54	2.5	54	83	4	177	32	8	18	40	1.82
31459238--31459459	54	4.1	54	83	6	175	40	9	21	29	1.84
31459264--31459475	27	7.9	27	91	2	257	40	8	23	27	1.84
31459481--31459570	27	3.3	27	82	3	110	33	10	16	40	1.82
31459481--31459585	27	3.9	27	76	9	81	35	9	16	39	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31461799--31461877	31	2.5	30	78	8	95	25	25	17	31	1.97
31461901--31461992	42	2.2	42	86	0	130	33	21	14	30	1.93
31462137--31462231	26	3.7	26	88	2	149	26	24	23	26	2.00
31463056--31463121	27	2.4	27	92	0	105	16	28	19	34	1.94
31463175--31463458	27	10.4	27	78	4	140	34	10	18	36	1.85
31463268--31463404	54	2.5	54	83	4	177	32	8	18	40	1.82
31463356--31463577	54	4.1	54	84	5	177	41	9	19	29	1.82
31463384--31463585	27	7.5	27	89	1	264	43	8	19	28	1.80
31463599--31463688	27	3.3	27	87	3	119	32	10	16	41	1.82
31469860--31469896	14	2.7	14	87	4	58	48	13	2	35	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250