genome.fa.s9.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  139  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44984289--44984457	43	4.0	42	78	7	189	24	17	27	30	1.97
44984300--44984457	84	1.9	84	88	5	239	25	18	27	29	1.98
45003760--45004016	130	2.0	130	95	0	460	31	6	20	42	1.77
45005371--45005479	45	2.4	46	81	7	125	41	10	22	26	1.85
45005400--45005489	46	2.0	44	91	4	144	37	8	23	30	1.85
45008565--45008621	20	2.9	19	75	12	53	10	24	19	45	1.81
45010131--45010185	16	3.4	16	72	18	51	45	3	1	49	1.30
45016389--45016704	48	6.6	48	76	3	269	26	25	18	29	1.98
45016393--45016667	96	2.9	96	85	1	354	25	26	18	28	1.98
45016393--45016704	96	3.2	93	81	5	329	26	26	18	28	1.98
45024236--45024281	23	2.0	23	95	0	83	36	6	21	34	1.80
45036325--45036554	96	2.4	96	96	0	415	26	29	18	26	1.98
45036327--45036557	48	4.8	48	85	0	309	26	29	18	25	1.98
45040474--45040541	34	2.0	34	97	0	127	32	16	23	27	1.96
45055662--45055717	26	2.2	26	100	0	112	30	23	10	35	1.89
45057108--45057220	37	3.1	36	90	8	169	24	30	18	25	1.98
45057339--45057910	47	12.4	47	93	4	947	29	29	8	33	1.87
45059045--45059308	47	5.6	47	93	3	451	30	29	7	32	1.86
45060445--45060709	47	5.6	47	95	2	460	30	29	8	32	1.87
45060433--45060709	96	2.9	94	93	3	475	29	29	8	31	1.87
45060445--45060709	143	1.9	142	96	2	480	30	29	8	32	1.87
45064710--45065020	44	7.1	47	80	16	343	30	29	8	32	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45064635--45065030	80	4.6	90	78	18	365	30	29	8	31	1.86
45064710--45065023	126	2.4	129	84	14	373	30	28	7	32	1.86
45064849--45065001	82	1.9	81	86	10	224	31	30	6	31	1.83
45066136--45066399	47	5.6	47	91	5	435	29	29	7	32	1.86
45067520--45067784	46	5.6	47	91	4	435	30	29	8	31	1.87
45070387--45070508	22	5.3	22	62	21	61	25	29	11	33	1.91
45070359--45070807	47	9.6	47	92	3	678	27	29	9	33	1.88
45070574--45070647	22	3.3	22	66	23	64	25	31	12	31	1.92
45072070--45072248	85	2.1	85	98	0	349	26	27	8	37	1.85
45073499--45073778	40	7.1	40	90	2	413	25	28	21	24	1.99
45073512--45073778	79	3.4	80	90	3	414	25	28	22	24	1.99
45073832--45073906	38	2.0	38	86	5	107	24	26	18	30	1.98
45076325--45076731	47	8.6	47	92	3	604	27	29	9	33	1.88
45076325--45076731	96	4.3	95	90	3	608	27	29	9	33	1.88
45077994--45078172	85	2.1	85	98	0	349	26	27	8	37	1.85
45082819--45082901	34	2.4	34	79	0	94	26	25	22	25	2.00
45085736--45085856	28	4.3	28	93	0	206	34	26	7	31	1.84
45085962--45086051	28	3.2	27	82	7	110	20	23	24	32	1.98
45093113--45093250	27	5.1	27	82	5	129	38	17	15	28	1.90
45093200--45093376	27	6.6	26	81	7	144	38	16	20	23	1.92
45093200--45093377	54	3.3	53	78	7	189	38	16	21	23	1.93
45093228--45093377	80	1.9	80	84	6	205	38	15	22	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45093767--45093809	18	2.4	18	80	7	52	20	23	16	39	1.92
45097087--45097293	53	3.8	54	78	3	229	36	18	24	20	1.95
45111661--45111801	42	3.3	44	78	13	134	31	24	18	26	1.98
45111644--45111801	42	3.7	43	74	16	132	32	25	17	24	1.96
45113618--45113708	30	3.0	30	83	1	101	32	15	16	35	1.90
45114058--45114084	14	1.9	14	100	0	54	44	3	14	37	1.63
45118502--45118542	19	2.1	20	86	4	57	19	24	0	56	1.42
45127173--45127208	18	2.0	18	88	0	54	47	5	19	27	1.72
45132264--45132333	11	6.6	11	71	15	67	31	5	0	62	1.18
45132267--45132304	12	3.3	12	78	14	53	31	5	0	63	1.17
45132260--45132304	22	2.0	22	100	0	90	35	4	0	60	1.17
45132278--45132336	30	2.0	30	100	0	118	27	5	0	67	1.11
45146876--45147254	48	7.9	48	80	6	349	25	29	18	26	1.98
45146881--45147254	143	2.6	144	84	4	488	25	29	18	26	1.98
45150775--45150826	27	1.9	27	92	0	86	44	11	19	25	1.84
45171743--45171853	52	2.1	51	91	3	177	17	18	16	47	1.83
45173053--45173098	23	2.0	23	86	0	65	34	6	0	58	1.24
45175509--45175547	18	2.2	18	100	0	78	43	15	10	30	1.80
45177530--45177634	27	3.9	27	82	5	106	21	22	19	36	1.95
45181677--45181703	13	2.1	13	100	0	54	25	29	22	22	1.99
45185791--45185907	31	3.8	31	90	1	182	28	27	16	28	1.97
45185929--45186062	42	3.2	42	92	0	232	34	20	14	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45186209--45186278	25	2.8	25	82	4	88	27	22	24	25	2.00
45187195--45187247	27	2.0	27	84	0	70	35	15	13	35	1.86
45187205--45187290	27	3.1	27	80	14	95	36	9	13	40	1.77
45187190--45187420	54	4.2	54	75	7	198	32	9	16	41	1.81
45187413--45187569	27	5.8	27	90	0	233	39	7	23	29	1.82
45187278--45187593	27	11.7	27	80	3	163	35	8	21	35	1.83
45187385--45187580	81	2.4	81	80	0	239	37	7	22	32	1.82
45187548--45187608	27	2.3	27	82	0	68	32	6	18	42	1.76
45187440--45187596	81	1.9	81	82	0	188	39	8	21	30	1.83
45194636--45194673	20	1.9	20	88	0	58	68	10	18	2	1.30
45197593--45197642	26	1.9	26	91	0	82	26	36	16	22	1.94
45202174--45202219	23	2.0	23	100	0	92	39	8	4	47	1.54
45203558--45203715	43	3.7	42	78	4	147	32	24	15	26	1.95
45211697--45211745	26	1.9	26	87	4	73	36	0	6	57	1.24
45213637--45213692	18	3.0	19	72	12	62	62	0	0	37	0.95
45215800--45215849	26	2.0	26	92	4	84	20	10	4	66	1.38
45220992--45221162	93	1.8	93	96	0	315	28	29	21	21	1.98
45220987--45221159	46	3.7	46	80	13	219	28	28	21	21	1.98
45221585--45221644	30	2.0	30	90	0	93	30	25	8	36	1.85
45228537--45228706	45	3.7	47	77	17	169	27	29	21	21	1.99
45228537--45228706	93	1.8	93	94	1	306	27	29	21	21	1.99
45243200--45243271	23	3.2	23	73	7	76	30	18	25	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45247912--45248030	29	4.2	29	77	6	118	28	29	12	29	1.93
45253887--45253928	14	3.0	14	83	10	50	42	7	2	47	1.43
45256218--45256268	24	2.1	24	82	7	59	47	17	19	15	1.83
45256482--45256608	28	4.5	28	93	0	200	24	14	34	26	1.93
45257862--45257895	18	1.9	18	88	5	52	44	8	14	32	1.76
45259252--45259283	9	3.6	9	95	0	55	21	0	12	65	1.25
45259519--45259558	19	2.1	19	86	9	55	25	2	17	55	1.55
45260204--45260357	45	3.3	45	76	10	132	27	22	18	30	1.98
45260213--45260325	23	4.9	23	74	21	78	25	22	17	34	1.96
45264429--45264531	52	1.9	54	90	7	165	33	12	14	39	1.84
45270318--45270372	16	3.4	17	77	10	69	41	14	9	34	1.77
45270316--45270379	32	2.0	32	96	0	119	42	15	7	34	1.76
45270318--45270379	16	3.8	16	77	10	63	43	16	8	32	1.77
45279895--45279931	18	2.1	19	90	10	60	29	8	27	35	1.85
45282840--45282961	43	2.8	43	81	2	147	25	20	27	26	1.99
45285511--45285547	18	2.1	18	100	0	74	40	37	5	16	1.71
45288096--45288135	12	3.2	13	86	10	57	52	0	2	45	1.14
45301504--45301607	41	2.5	41	84	6	129	26	25	19	28	1.98
45301504--45301797	43	6.9	43	80	6	168	28	27	16	26	1.97
45301558--45301797	43	5.6	43	83	1	277	30	28	16	25	1.96
45301533--45301797	129	2.1	126	82	5	318	29	27	16	25	1.97
45301500--45301797	86	3.5	86	83	2	334	29	28	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45306541--45306589	24	2.0	24	96	0	89	40	4	20	34	1.71
45306752--45306781	9	3.2	9	95	4	51	43	0	0	56	0.99
45310126--45310158	8	4.1	8	100	0	66	36	0	51	12	1.39
45310559--45310596	18	2.1	18	90	0	58	26	2	39	31	1.70
45311029--45311065	12	2.7	15	76	24	53	21	43	8	27	1.80
45311365--45311424	9	6.7	9	73	11	52	40	33	1	25	1.66
45311375--45311452	6	12.5	6	70	12	50	38	30	3	26	1.74
45311365--45311452	18	5.1	18	77	9	76	38	31	3	26	1.73
45311675--45311712	3	12.7	3	83	10	51	0	2	28	68	1.03
45312163--45312191	12	2.3	13	94	5	51	68	0	27	3	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250