genome.fa.s9.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  160  of  250  ( 29906 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51466778--51466834	28	2.0	29	83	10	73	35	1	1	61	1.17
51466827--51466872	20	2.2	21	84	3	67	41	4	6	47	1.49
51469611--51469679	29	2.3	30	85	5	95	37	8	11	42	1.72
51470591--51470639	21	2.3	20	77	16	55	42	4	4	48	1.40
51477705--51477742	20	1.9	20	94	0	67	44	2	0	52	1.14
51477712--51477751	20	2.0	20	85	0	53	52	0	0	47	1.00
51479317--51479359	17	2.5	17	100	0	86	41	18	9	30	1.82
51479467--51479749	18	15.3	18	69	12	144	36	15	13	35	1.86
51479454--51479749	36	8.0	36	70	10	186	36	15	12	35	1.85
51479854--51479883	6	5.0	6	95	0	51	46	16	20	16	1.84
51481721--51481783	31	2.0	32	84	9	85	47	4	0	47	1.23
51491152--51491243	40	2.3	40	83	3	107	14	11	36	36	1.83
51494161--51494334	46	3.7	46	76	6	172	26	19	29	24	1.99
51494162--51494370	46	4.5	46	75	14	164	27	18	29	24	1.98
51498424--51498559	46	3.0	46	87	2	184	22	22	13	41	1.89
51505030--51505247	46	4.7	45	78	12	208	26	18	31	23	1.98
51507009--51507035	13	2.1	13	100	0	54	29	0	0	70	0.88
51508225--51508282	21	2.8	21	97	0	98	17	27	25	29	1.97
51511682--51511728	26	1.9	24	83	12	60	42	2	4	51	1.33
51517717--51517783	25	2.7	25	77	9	82	31	13	26	28	1.94
51517774--51517854	24	3.3	24	75	11	76	35	18	25	19	1.95
51517886--51517954	25	2.7	26	82	6	88	36	24	23	15	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51519365--51520160	418	1.9	419	86	3	1145	31	14	19	34	1.92
51521201--51521444	122	2.0	122	97	0	461	36	15	12	35	1.86
51522153--51522348	56	3.5	57	85	1	243	51	16	6	26	1.68
51524669--51524855	63	3.0	63	83	3	182	28	25	24	21	1.99
51524743--51524859	62	1.9	62	89	3	182	31	29	20	18	1.97
51528919--51528962	21	2.1	21	91	0	70	72	0	20	6	1.07
51536103--51536163	21	2.9	21	64	9	52	49	3	16	31	1.62
51536103--51536185	42	2.0	42	100	0	166	51	2	14	31	1.55
51536117--51536184	21	3.2	21	67	8	66	57	1	11	29	1.43
51542111--51542146	14	2.6	14	90	0	63	38	5	22	33	1.77
51543318--51543352	17	2.1	17	88	0	52	51	8	2	37	1.47
51545667--51545705	16	2.4	16	83	8	53	56	0	0	43	0.99
51546159--51546229	37	1.9	37	97	0	133	42	9	29	18	1.82
51549461--51549500	18	2.3	18	86	4	55	12	27	42	17	1.85
51562969--51563019	12	4.4	11	87	5	57	78	1	3	15	0.99
51562980--51563019	6	6.8	6	94	2	64	80	0	2	17	0.83
51564314--51564352	17	2.1	20	86	13	57	53	10	2	33	1.48
51570386--51570440	28	1.9	28	85	10	76	34	5	1	58	1.32
51570423--51570463	16	2.7	15	88	7	64	29	0	7	63	1.21
51581633--51581814	86	2.1	86	87	2	258	20	33	26	19	1.97
51584128--51584262	60	2.3	57	82	5	153	45	0	3	49	1.25
51584433--51584487	16	3.4	16	82	0	74	29	25	9	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51584822--51584863	14	2.9	15	82	7	59	64	0	16	19	1.30
51588503--51588572	8	8.8	8	71	12	54	68	0	5	25	1.11
51588525--51588572	4	12.5	4	78	8	55	70	0	2	27	0.98
51588525--51588572	15	3.1	15	78	3	51	70	0	2	27	0.98
51588525--51588566	19	2.2	19	86	0	57	71	0	0	28	0.86
51588503--51588608	56	1.9	54	81	11	126	65	0	8	25	1.27
51589811--51590323	256	2.0	256	95	0	920	22	11	28	37	1.89
51590548--51590940	44	8.8	43	73	11	202	27	20	19	32	1.97
51590540--51590940	88	4.5	88	75	10	251	27	20	18	32	1.96
51590780--51591027	95	2.7	95	79	9	246	26	18	21	33	1.97
51590780--51591025	44	5.4	43	77	8	215	26	19	21	32	1.97
51597189--51597220	16	2.1	16	94	5	57	56	9	6	28	1.55
51597987--51598042	26	2.2	25	78	9	58	58	0	10	30	1.32
51598082--51598145	3	21.3	3	76	12	60	68	3	4	23	1.23
51605479--51605522	3	14.7	3	85	0	61	63	4	2	29	1.26
51611874--51611917	10	4.4	10	82	0	61	25	9	0	65	1.21
51611880--51611928	20	2.5	20	80	6	55	26	6	2	65	1.27
51613030--51613077	25	1.9	25	95	0	87	22	10	31	35	1.88
51613383--51613435	24	2.2	24	86	0	70	37	3	7	50	1.49
51615609--51615807	104	1.9	104	82	2	247	23	28	23	25	1.99
51619924--51619980	25	2.3	25	81	0	69	28	26	21	24	1.99
51622990--51623118	25	5.4	25	67	18	89	24	27	19	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51622982--51623069	44	2.0	44	97	0	167	26	28	18	27	1.98
51626520--51626589	36	1.9	36	91	5	115	30	8	10	51	1.65
51629421--51629493	23	3.2	23	82	0	83	21	24	19	34	1.96
51629432--51629532	23	4.5	22	77	16	82	19	25	18	35	1.95
51629486--51629527	22	1.9	22	90	0	66	21	28	16	33	1.95
51629709--51629754	9	5.3	9	78	19	53	41	8	13	36	1.75
51634109--51634194	40	2.2	39	87	2	118	29	29	17	24	1.97
51640006--51640043	16	2.5	15	84	16	51	36	0	18	44	1.50
51640367--51640433	22	2.8	24	80	15	86	19	26	19	34	1.96
51644756--51644787	16	2.0	16	100	0	64	18	6	0	75	1.01
51647593--51647640	17	2.9	17	81	12	64	45	0	0	54	0.99
51649058--51649086	3	9.7	3	100	0	58	31	0	0	68	0.89
51650504--51650569	21	3.0	21	82	12	55	25	3	1	69	1.11
51650536--51650569	17	2.0	17	88	11	52	20	0	2	76	0.92
51650513--51650569	4	13.2	4	77	17	53	22	3	1	71	1.10
51652894--51653002	35	3.1	34	69	11	78	20	10	29	40	1.85
51654492--51654545	23	2.3	23	90	0	90	24	12	24	38	1.90
51655962--51656030	22	3.2	22	72	14	54	69	5	7	17	1.32
51655999--51656077	3	26.0	3	75	16	74	65	3	1	29	1.17
51656040--51656095	28	2.0	28	82	6	69	57	1	8	32	1.40
51656208--51656349	3	46.7	3	70	18	55	59	0	8	31	1.33
51656152--51656249	23	4.3	22	67	14	65	57	3	9	30	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51658000--51658401	45	9.0	45	71	11	218	28	22	18	31	1.97
51658054--51658346	96	3.3	90	74	14	228	29	20	18	31	1.96
51658186--51658446	45	5.8	45	79	8	115	29	24	16	29	1.97
51658294--51658968	177	3.8	178	77	5	408	27	25	18	28	1.98
51658399--51658968	177	3.2	177	79	4	603	26	25	19	28	1.98
51658602--51658699	44	2.2	44	79	13	103	30	22	18	28	1.97
51658910--51659335	44	9.8	44	73	8	309	25	24	21	28	1.99
51658910--51659362	130	3.5	130	89	1	656	25	24	21	29	1.99
51658935--51659335	86	4.6	86	75	8	294	25	24	20	28	1.99
51667548--51667642	9	9.7	9	68	22	50	66	1	4	28	1.17
51667564--51667667	31	3.5	30	71	18	85	63	0	6	28	1.26
51667591--51667738	21	7.3	21	67	18	73	59	2	4	33	1.30
51667551--51667698	57	2.6	56	83	11	178	63	2	5	29	1.28
51667548--51667698	55	2.7	54	80	13	157	63	1	5	29	1.27
51669170--51669238	22	3.2	22	72	14	54	69	5	7	17	1.32
51669207--51669300	3	31.0	3	79	14	104	65	3	1	29	1.14
51669207--51669318	28	4.0	28	76	14	88	63	2	4	29	1.28
51669541--51669598	3	19.3	3	82	7	73	67	0	1	31	1.01
51675125--51675164	20	2.0	20	85	9	55	45	0	5	50	1.23
51678185--51678225	6	6.8	6	100	0	82	0	48	0	51	1.00
51680585--51680613	14	2.0	15	93	6	51	34	3	0	62	1.12
51680617--51680655	17	2.3	17	86	8	53	33	2	5	58	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51685209--51685251	19	2.3	19	80	8	52	37	9	2	51	1.47
51689873--51689946	37	2.0	37	94	0	130	21	21	24	32	1.98
51692599--51692659	20	3.2	20	73	17	67	36	16	13	34	1.87
51693001--51693111	51	2.2	52	85	4	145	47	14	1	36	1.55
51693335--51693381	23	2.1	22	88	11	69	38	0	0	61	0.96
51693483--51693524	14	3.0	15	83	13	54	59	0	0	40	0.97
51693551--51693612	15	3.8	15	72	17	52	48	1	3	46	1.28
51694071--51694109	14	2.8	14	92	0	60	33	17	7	41	1.79
51698778--51698843	29	2.2	30	78	2	71	34	4	15	45	1.66
51703176--51703218	18	2.3	19	88	4	61	65	2	0	32	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250