Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A09
Parameters: 2 7 7 80 10 50 1000
Length:  77927517

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   

This is table  167  of  250  ( 29906 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53777625--53777653
10
2.7
11
89
10
51
20
0
0
79
0.74
53777924--53777955
17
1.9
17
93
6
57
34
18
3
43
1.66
53783894--53783941
20
2.4
21
82
10
64
39
14
10
35
1.80
53784112--53784168
23
2.4
24
80
16
66
36
15
21
26
1.93
53793627--53793665
18
2.2
18
86
4
53
20
7
0
71
1.10
53793894--53793947
11
5.7
10
76
24
55
35
0
3
61
1.14
53799584--53799685
43
2.3
45
84
3
136
33
16
21
28
1.95
53799761--53799856
43
2.2
45
83
7
126
30
16
23
29
1.96
53799557--53800383
177
4.7
177
87
3
1118
30
17
23
27
1.97
53799671--53799945
89
3.1
89
62
18
201
29
20
22
27
1.99
53805309--53805357
20
2.5
20
86
3
64
53
0
24
22
1.47
53812542--53812605
32
2.1
29
82
8
74
35
4
0
59
1.18
53812600--53812649
25
2.0
25
88
3
75
40
0
2
58
1.10
53826033--53826064
14
2.1
16
88
11
50
53
9
6
31
1.58
53826666--53826741
23
3.2
25
82
14
81
42
0
0
57
0.98
53834928--53834980
21
2.6
20
77
11
54
24
11
1
62
1.39
53843683--53843722
15
2.7
15
84
3
55
50
2
0
47
1.14
53845668--53845715
24
2.0
24
83
0
60
58
8
2
31
1.39
53847901--53847956
28
2.0
28
96
0
103
23
14
7
55
1.63
53848328--53848370
18
2.4
18
92
0
68
58
2
0
39
1.11
53851226--53851258
4
8.2
4
90
10
50
21
3
0
75
0.93
53854477--53854547
31
2.2
32
90
2
108
39
7
4
49
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53854958--53854989
16
1.9
17
93
6
57
75
3
3
18
1.08
53856307--53856369
6
10.3
6
83
10
83
22
1
0
76
0.88
53856286--53856381
32
3.1
31
81
10
99
22
4
1
71
1.09
53856307--53856379
18
3.9
17
77
15
56
23
2
0
73
0.95
53856307--53856381
32
2.4
32
86
6
100
22
2
0
74
0.94
53857953--53858019
34
2.0
34
96
0
125
35
29
11
22
1.90
53869250--53869295
21
2.2
21
100
0
92
30
26
15
28
1.96
53869250--53869295
7
6.6
7
79
0
56
30
26
15
28
1.96
53869250--53869301
21
2.5
21
93
0
77
32
23
13
30
1.93
53869707--53869760
25
2.2
25
83
6
65
16
27
38
16
1.90
53870994--53871067
20
3.7
19
73
18
69
12
0
37
50
1.40
53870970--53871067
41
2.4
41
85
0
133
14
0
34
51
1.43
53871018--53871083
34
1.9
34
81
6
80
15
0
34
50
1.44
53871056--53871156
42
2.3
43
85
6
116
25
3
31
38
1.74
53871164--53871206
21
2.0
21
86
0
59
25
4
27
41
1.75
53877366--53877533
40
4.2
40
82
4
115
25
26
23
24
2.00
53877389--53877533
40
3.6
40
85
4
193
23
25
24
26
2.00
53879315--53879352
3
12.7
3
100
0
76
68
0
31
0
0.90
53880526--53880550
7
3.6
7
100
0
50
88
0
0
12
0.53
53888308--53888337
15
2.0
15
93
0
51
23
0
0
76
0.78
53890203--53890310
26
4.2
26
93
0
189
32
7
24
36
1.83
53891907--53892018
27
4.1
27
83
3
118
16
25
23
34
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53891907--53892018
54
2.1
54
86
3
154
16
25
23
34
1.95
53893143--53893192
10
5.0
10
85
9
75
68
2
8
22
1.26
53893638--53893771
38
3.5
38
73
13
139
29
23
20
26
1.99
53893638--53893817
77
2.4
75
88
4
270
30
23
18
26
1.98
53893649--53893769
40
3.1
39
70
20
117
31
24
18
25
1.97
53898407--53898455
26
1.9
25
87
4
71
22
4
10
63
1.43
53898445--53898524
26
3.1
28
77
16
84
35
3
6
55
1.43
53898480--53898533
26
2.1
26
82
6
65
35
7
3
53
1.47
53911318--53911348
16
1.9
16
93
0
53
48
6
0
45
1.28
53911316--53911358
16
2.7
16
82
7
52
51
4
0
44
1.22
53911503--53911561
29
2.0
30
86
3
84
27
8
13
50
1.70
53912639--53912663
12
2.1
12
100
0
50
60
0
0
40
0.97
53914174--53914274
50
2.0
50
84
1
132
30
4
11
52
1.59
53914317--53914348
17
1.9
17
93
6
57
34
12
6
46
1.67
53916392--53916541
18
8.5
17
68
20
78
68
0
18
12
1.24
53916458--53916519
6
10.5
6
74
8
56
74
0
19
6
1.03
53918362--53918394
17
1.9
17
93
0
57
36
12
3
48
1.56
53918458--53918515
30
1.9
30
86
6
82
39
12
20
27
1.88
53923312--53923340
12
2.3
13
94
5
51
72
0
3
24
1.00
53927595--53927656
30
2.1
30
87
0
88
41
17
17
22
1.90
53934199--53934250
27
1.9
27
88
0
77
38
11
23
26
1.89
53935378--53935416
18
2.2
18
90
0
60
25
28
28
17
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53946647--53946694
24
2.0
23
96
4
87
56
8
4
31
1.48
53948228--53948259
3
10.7
3
100
0
64
0
34
0
65
0.93
53949698--53949785
38
2.3
38
92
0
140
30
12
21
35
1.91
53957250--53957333
28
3.2
27
65
25
72
23
15
29
30
1.95
53957202--53957377
50
3.5
49
85
3
235
25
17
27
28
1.98
53960858--53960898
22
1.9
21
85
5
55
26
14
2
56
1.51
53962338--53962408
6
11.5
6
92
4
99
15
0
1
83
0.73
53965701--53965749
24
2.0
24
100
0
98
24
0
20
55
1.44
53966364--53966556
96
2.0
96
97
0
368
36
12
17
33
1.87
53972478--53972521
19
2.3
18
81
11
52
38
0
4
56
1.20
53974670--53974944
46
6.0
46
91
0
415
38
15
24
21
1.92
53974670--53974991
46
7.0
46
89
0
401
40
14
23
21
1.91
53984204--53984331
63
2.0
62
79
11
136
24
21
21
33
1.97
53986239--53986305
29
2.3
30
84
7
84
47
0
22
29
1.51
53997735--53997768
13
2.6
13
82
17
52
32
2
0
64
1.08
53998566--53998603
20
2.0
19
85
10
51
42
13
21
23
1.88
54000417--54000450
16
2.2
16
89
5
52
32
0
0
67
0.91
54000395--54000605
13
16.8
12
66
20
69
34
4
3
56
1.38
54000381--54000619
129
1.9
127
87
8
360
34
5
4
55
1.43
54000475--54000547
24
3.0
24
78
6
76
34
6
4
54
1.46
54000736--54000787
26
2.0
26
88
0
77
28
7
3
59
1.43
54000978--54001009
15
2.1
15
94
0
55
31
3
0
65
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54011958--54011992
18
1.9
18
100
0
70
5
0
34
60
1.21
54011958--54011996
16
2.3
17
91
8
62
5
0
41
53
1.23
54011959--54011997
17
2.2
18
90
4
62
5
0
43
51
1.24
54011959--54011998
18
2.2
18
90
0
62
5
0
45
50
1.23
54014903--54014935
16
2.1
16
88
11
50
3
15
0
81
0.80
54016987--54017050
34
1.9
34
84
12
89
39
6
3
51
1.43
54022175--54022233
10
6.1
10
78
9
52
64
0
1
33
1.04
54022176--54022227
9
5.6
9
77
13
52
63
0
1
34
1.06
54022177--54022227
18
2.7
19
85
14
70
62
0
1
35
1.06
54023913--54023951
19
1.9
19
85
10
51
28
12
0
58
1.34
54027534--54027563
3
10.0
3
100
0
60
33
0
0
66
0.92
54038428--54038490
29
2.2
29
82
5
74
61
9
4
23
1.45
54040513--54040574
29
2.1
30
87
3
90
58
14
3
24
1.51
54040606--54040635
14
2.1
14
93
0
51
63
13
6
16
1.50
54050015--54050115
51
2.0
51
98
0
193
42
5
27
23
1.77
54051152--54051184
15
2.1
16
88
5
50
15
0
21
63
1.30
54068245--54068278
10
3.5
10
84
8
52
35
0
2
61
1.11
54068392--54068416
10
2.5
10
100
0
50
76
8
0
16
1.02
54068426--54068458
10
3.4
10
83
8
50
63
3
0
33
1.10
54068324--54068520
85
2.4
87
86
10
272
61
3
3
32
1.27
54068500--54068551
21
2.5
20
81
9
61
69
3
0
26
1.06
54068324--54068550
85
2.8
77
83
11
226
62
3
2
32
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54068324--54068564
79
3.0
76
81
12
200
63
3
2
30
1.23
54074877--54075148
135
2.0
138
86
3
379
29
18
17
34
1.94
54088712--54088977
46
6.0
46
83
7
334
22
24
14
38
1.92
54088891--54088966
38
2.0
38
97
0
143
23
27
18
30
1.98
54094214--54094264
25
2.0
25
84
7
66
5
11
9
72
1.27
54094257--54094298
11
3.8
11
80
0
57
21
19
9
50
1.75
54094408--54094472
34
1.9
33
84
12
87
30
1
4
63
1.24
54094449--54094479
9
3.4
9
95
0
53
25
0
3
70
1.02
54094447--54094496
18
2.7
19
78
9
59
26
0
6
68
1.13
54094692--54094732
18
2.3
18
80
16
50
46
9
0
43
1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250